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Indiana University Bloomington

Department of Biology

Faculty & Research

Recent Journal Cover Articles by Members of the Department

American Journal of Botany cover, April 2012 99:700-707
Molecular Microbiology journal cover: December 2013, Vol 90, No 6 Molecular Microbiology journal cover: December 2013. Volume 90, Number 5 Nature journal cover: March 31, 2011. Volume 471, Number 7340 Sarah B. Guttenplan, Sidney Shaw and Daniel B. Kearns. 2012. The cell biology of peritrichous flagella in Bacillus subtilis. Mol. Microbol. 87(1):211-229. Loralyn M. Cozy, Andrew M. Phillips, Rebecca A. Calvo, Ashley R. Bate, Yi-Huang Hsueh, Richard Bonneau, Patrick Eichenberger and Daniel B. Kearns. 2012. SlrA/SinR/SlrR inhibits motility gene expression upstream of a hypersensitive and hysteretic switch at the level of σD in Bacillus subtilis. Mol. Microbol. 84(1):1210-1228. Jing Nie, Simpla Mahato, Wendy Mustill, Cindy Tipping, Shomi S. Bhattacharya, Andrew C. Zelhof. 2012. Cross species analysis of Prominin reveals a conserved cellular role in invertebrate and vertebrate photoreceptor cells. Developmental Biology 371(2): 312–320.
Zan, J., Cicirelli, E.M., N.M. Mohamed, H. Sibhatu, S. Kroll, O Choi, C.L. Uhlson, C. L. Wysoczinski, R.C. Murphy, M.E.A. Churchill, R.T. Hill and C. Fuqua. 2012. A complex LuxR-LuxI type quorum sensing network in a roseobacterial marine sponge symbiont activates flagellar motility and inhibits biofilm formation. Mol. Microbiol. 85:916-933. Bethany R. Wasik, Armin P. Moczek. 2012. pangolin expression influences the development of a morphological novelty: Beetle horns. Genesis 40(5): 404-414 Changde Cheng, Bradley J. White, Colince Kamdem, Keithanne Mockaitis, Carlo Costantini, Matthew W. Hahn and Nora J. Besansky. 2012. Ecological Genomics of Anopheles gambiae Along a Latitudinal Cline: A Population-Resequencing Approach. Genetics 190(4): 1417-1432. Meghan A. Duffy, Jessica Housley Ochs, Rachel M. Penczykowski, David J. Civitello, Christopher A. Klausmeier, Spencer R. Hall. 2012. Ecological Context Influences Epidemic Size and Parasite-Driven Evolution. Science 335 (6076): 1636-1638. Abigail M. Anderson, Bonnie M. Weasner, Brandon P. Weasner and Justin P. Kumar. 2012. Dual transcriptional activities of SIX proteins define their roles in normal and ectopic eye development. Development: 139, 991-1000.  Guanglai Li, Pamela J. B. Brown, Jay X. Tang, Jing Xu, Ellen M. Quardokus, Clay Fuqua, Yves V. Brun. 2011. Surface contact stimulates the just-in-time deployment of bacterial adhesins. Molecular Microbiology 83: 41-51.
 Yung...Kingsbury et al. 2011. Lysophosphatidic Acid Signaling May Initiate Fetal Hydrocephalus. Science Translational Medicine. 3(99):99. RR Datta, BP Weasner and JP Kumar. 2011. A dissection of the teashirt and tiptop genes reveals a novel mechanism for regulating transcription factor activity. Devel. Bio. 360:391-402. J.B. McKinlay and C.S. Harwood. 2011. Harnessing Bacteria That Use Light To Produce Hydrogen. Microbe: August 2011. B. R. Wasik and A. P. Moczek. 2011. Decapentaplegic (dpp) regulates the growth of a morphological novelty, beetle horns. Development Genes and Evolution 221(1): 17-27. Kumar, J. Chapter One - Retinal Determination: The Beginning of Eye Development. 2010. Current Topics in Developmental Biology. 93: 1-28.  Stajich...Burns...Palmerini...Zolan et al. 2010. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). PNAS 107(26): 11889-11894.
Michael E. Hibbing, Clay Fuqua, Matthew R. Parsek & S. Brook Peterson. 2010. Bacterial competition: surviving and thriving in the microbial jungle. Nature Reviews Microbiology 8: 15-25. Loralyn M. Cozy and Daniel B. Kearns. 2010. Gene position in a long operon governs motility development in Bacillus subtilis. Genes & Deveopment 76: 273-285. Voss, M. & G. Velicer. 2009. Social Conflict in Centimeter-and Global-Scale Populations of the Bacterium Myxococcus xanthus. Curr. Biol. 19(20): 1763-1767. R Chen, SB Guttenplan, KM Blair & DB Kearns. 2009. Role of the sigmaD-Dependent Autolysins in Bacillus subtilis Population Heterogeneity. J. Bacteriol. 191: 5775-5784. SM Barendt, AD Land, L-T Sham, W-L Ng, H-CT T, RJ Arnold & ME Winkler. 2009. Influences of Capsule on Cell Shape and Chain Formation of Wild-Type and pcsB Mutants of Serotype 2 Streptococcus pneumoniae. J. Bacteriol. 191: 3024-3040. Weasner, B.P. and Kumar, J.P. 2009. The non-conserved C-terminal segments of Sine oculis homeobox (SIX) proteins confer functional specificity. Genesis 47: 514-523.
Kumar, J.P. (2009) The molecular circuitry governing retinal determination. Biochimica et Biophysica Acta 1789: 306-314 Moczek AP, Rose D. Differential recruitment of limb patterning genes during development and diversification of beetle horns. PNAS 2009 106:8992-8997. Foster, P.L. Evolution and Develpment Vol 11 Issue 1 ,(January/February 2009) Sonam Mehrotra, Shahina B. Maqbool, Alexis Kolpakas, Katherine Murnen and Brian R.Calvi.(2008) Endocycling Cells do not Apoptose in Response to DNA Re-replication Genotoxic Stress. Genes & Development  22:3158-3171. Sonam Mehrotra, Shahina B. Maqbool, Alexis Kolpakas, Katherine Murnen and Brian R.Calvi.(2008) Endocycling Cells do not Apoptose in Response to DNA Re-replication Genotoxic Stress. Genes & Development  22:3158-3171. Gibbs, R.A. et al. 2007. Evolutionary and Biomedical Insights from the Rhesus Macaque Genome. Science 316 (5822): 222-234.
Weasner, B., Salzer, C. and Kumar, J.P. (2007) Sine oculis, a member of the Six family of transcription factors directs eye formation. Developmental Biology 303:756-771. Weasner, B., Salzer, C. and Kumar, J.P. (2007) Sine oculis, a member of the Six family of transcription factors directs eye formation. Developmental Biology 303:756-771. Moczek AP, Rose D, Sewell W, Kesselring BR 2006. Conservation, innovation, and the evolution of horned beetle diversity. Development Genes and Evolution 216: 655 - 665. G. Troy Smith, Graciela A. Unguez, and Christopher M. Weber (2006) Distribution of Kv1-like potassium channels in the electromotor and electrosensory systems of the weakly electric fish Apteronotus leptorhynchus. Journal of Neurobiology 66(9):1011-1031., WIDTH, -300, FONTCOLOR, '#470806', FADEOUT, 100, BGCOLOR, '#DFDFFF' F Fiegna, Y-T N Yu, SV Kadam & GJ Velicer. 2006. Evolution of an obligate social cheater to a superior cooperator. Nature 441, 310-314. D. Kearns & R. Losick. 2005. Cell population heterogeneity during growth of Bacillus subtilis. Genes Dev. 19(24): 3083-94.
Moczek AP 2005. The Evolution of Novelties, or how Beetles got their Horns. BioScience (November 2005) Vol. 55, No. 11, page 937-951. KD Whitney. 2005. Linking frugivores to the dynamics of a fruit color polymorphism. Am. J. Botany 92:859-867. , page 937-951.', WIDTH, -300, FONTCOLOR, '#470806', FADEOUT, 100, BGCOLOR, '#DFDFFF' Visick, K.L. and C. Fuqua. 2005. Decoding microbial chatter: Cell-cell communication in bacteria. J. Bacteriol. 187:5507-5519. Moczek AP, Nagy LM 2005. Diverse developmental mechanisms contribute to different levels of diversity in horned beetles. Evolution & Development 7: 175-185. Rockman, M.V., M.W. Hahn, D. Loisel, N. Soranzo, D.B. Goldstein, and G.A. Wray (2004) Positive selection on MMP3 regulation has shaped heart disease risk. Current Biology. 14:1531-1539. Stowe-Evans, E. L. and D. M. Kehoe. 2004. Signal transduction during light quality acclimation in cyanobacteria: a model system for understanding phytochrome response pathways in prokaryotes. Journal of Photochemical and Photobiological Sciences, 3: 495-502., WIDTH, -300, FONTCOLOR, '#470806', FADEOUT, 100, BGCOLOR, '#DFDFFF'
James E. Berleman, Benjamin M. Hasselbring, and Carl E. Bauer. 2004. Hypercyst Mutants in Rhodospirillum centenum Identify Regulatory Loci Involved in Cyst Cell Differentiation. J. Bacteriol. 186: 5834-5841. Ng, W-L., K. M. Kazmierczak and M. E. Winkler. 2004. Defective cell wall synthesis in Streptococcus pneumoniae R6 depleted for the essential PcsB putative murein hydrolase or the VicR (YycF) response regulator. Molecular Microbiology 53:1161-1177.', WIDTH, -300, FONTCOLOR, '#470806', FADEOUT, 100, BGCOLOR, '#DFDFFF' B. E. Ramey, A. G. Matthysse & C. Fuqua. 2004. The FNR-type transcriptional regulator SinR controls maturation of Agrobacterium tumefaciens biofilms. Molecular Microbiology 52: 1495-1512., WIDTH, -300, FONTCOLOR, '#470806', FADEOUT, 100, BGCOLOR, '#DFDFFF' Lacy, K.E. and E. P. Martins. 2003. The effects of anthropogenic habitat usage on the social behaviour of a vulnerable species, Cyclura nubila. Animal Conservation, 6: 3-9. Raff, E. C., Popodi, E. M., Kauffman, J.  S., Sly, B. J., Turner, F. R., Morris, V. B., and Raff, R. A. 2003. Regulatory punctuated equilibrium and convergence in the evolution of developmental pathways in direct-developing sea urchins. Evo. Dev., 5:478-493. Balabas, B., Montgomery, B. L., Ong, L. E., and D. M. Kehoe. 2003. CotB is essential for complete activation of green light induced genes during complementary chromatic adaptation in Fremyella diplosiphon. Molecular Microbiology, 50: 781-793.
Lance J. Kriegsfeld, Andrew K. Hotchkiss, Gregory E. Demas, Ann-Judith Silverman, Rae Silver and Randy J. Nelson. 2003. Brain mast cells are influenced by chemosensory cues associated with estrus induction in female prairie voles (Microtus ochrogaster). Hormones and Behavior 44:377-384. Alvey, R. M., Karty, J. A., Roos, E., Reilly, J. P., and D. M. Kehoe. 2003. pebAB, the operon encoding 15,16-dihydrobiliverdin oxidoreductase and PEB oxidoreductase, is coordinately regulated with cpeBA during complementary chromatic adaptation in Fremyella diplosiphon. The Plant Cell, 15: 2448-2463. Allen, E.S. and K. E. Omland. 2003. Novel intron phylogeny supports plumage convergence in Orioles (Icterus). Auk 120: 961-969. DeBlasio, S.L, Mullen, J.L., Luesse, D.L. and Hangarter, R.P. 2003 Phytochrome Modulation of Blue-Light-Induced Chloroplast Movements in Arabidopsis. Plant Physiol. 133: 1471-1479. Takuya Nakazato and Gerald J. Gastony. 2003. Molecular Phylogenetics of Anogramma Species and Related Genera (Pteridaceae: Taenitidoideae). Systematic Biology 28: 490-502. Marcia M. E. Ireland, Jonathan A. Karty, Ellen M. Quardokus, James P. Reilly, Yves V. Brun. 2002. Proteomic analysis of the Caulobacter crescentus stalk indicates competence for nutrient uptake. Molecular Microbiology 45:1029-1042.
Masuda, S. & C. E. Bauer. 2002. AppA is a blue-light photoreceptor that anti-represses photosynthesis gene expression in Rhodobacter sphaeroides  Cell 110, 613-623. James D. Bever, Peggy A. Schultz, Anne Pringle, and Joseph B. Morton. 2001. Arbuscular Mycorrhizal Fungi: More Diverse than Meets the Eye, and the Ecological Tale of Why. Bioscience 51: 923-932. E.M. Quardokus, N.Din, and Y.V. Brun. 2001. Cell cycle and positional constrains on FtsZ localization and the intitation of cell division in Caulobacter crescentus. Molecular Microbiology 39: 949-959 EC Raff, JA Hutchens, H Hoyle, MG Nielsen  and FR Turner.  2000.  Conserved axoneme symmetry altered by a component ß-tubulin.  Current Biology 10: 1391-1394. Xiong J., K. Inoue, M. Nakahara & C. E. Bauer. 2000. Molecular evidence for the early evolution of photosynthesis. Science. 289, 1724-1730. Raff, E. C., E. M. Popodi, B. J. Sly, F. R. Turner, J. T. Villinski, and R. A. Raff. 1999. A novel ontogenetic pathway in hybrid embryos between species with different modes of development. Development 126:1937-1945.
Parkinson, C. L., Adams, K. L., and Palmer, J. D. 1999. Multigene analyses identify the three earliest lineages of extant flowering plants. Curr. Biol. 9:1481-1485. Kehoe, D. M., Villand, P., and S. Somerville. 1999. DNA microarrays for studies of higher plants and other photosynthetic organisms. Trends in Plant Science, 4: 38-41. Moczek AP (1998). Horn polyphenism in the beetle Onthophagus taurus: diet quality and plasticity in parental investment determine adult body size and male horn morphology. Behavioral Ecology 9: 636-641. Aaron J. Kelly, Marcella J. Sackett, Neena Din, Ellen Quardokus, and Yves V. Brun. 1998. Cell cycle-dependent transcriptional and proteolytic regulation of FtsZ in Caulobacter. Genes Dev. 12: 880-893. Titus, R.C., E.D. Ketterson, and V. Nolan Jr. 1997. High testosterone prior to song crystallization inhibits singing behavior in captive yearling dark-eyed juncos, Junco hyemalis. Hormones and Behavior 32:133-140. Kehoe, D. M. and A. R. Grossman. 1996. Similarity of a chromatic adaptation sensor to phytochrome and ethylene receptors. Science, 273: 1409-1412
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