| DATE | TOPIC | SUPPLEMENTAL READINGS |
HOMEWORK DUE ON THIS DATE |
|---|---|---|---|
| 1/10 | Introduction to Chemistry and Life Sciences Databases (Gary Wiggins) | Week 1a | |
| 1/12 | Introduction to Chemistry and Life Sciences Databases (Gary Wiggins) | Week 1b | |
| 1/17 | The NIH Roadmap Program and PubChem (PowerPoint) (Gary Wiggins) | Week 2a | |
| 1/19 | The The NIH Roadmap Program and PubChem (Links) (Gary Wiggins) | Week 2b | |
| 1/24 | Cheminformatics Tools, Services, and Workflows-I (David Wild) | Week 3a | |
| 1/26 | Cheminformatics Tools, Services, and Workflows-II (David Wild) | Week 3b | |
| 1/31 | Database Modeling and Design (Melanie Wu) | Week 4a | |
| 2/2 | General Data Mining Techniques (Melanie Wu) | Week 4b |
|
| 2/7 | Data Warehousing (Melanie Wu) | Week 5a |
|
| 2/9 | Text Mining Techniques for PubMed (Luis Rocha) | Week 5b | |
| 2/14 | XML Documents, Schema, and CML (Chemical Markup Language) (Malika Mahoui) | Week 6a | |
| 2/16 | Querying XML Data (Melanie Wu) | Week 6b | |
| 2/21 | Chemical Ontologies (Kent Holaday) | Week 7a |
|
| 2/23 | Life Sciences Ontologies (Gary Grumbling) | Week 7b |
|
| 2/28 | An Overview of Computational Grid Technologies (Marlon Pierce) | Week 8a |
|
| 3/2 | Building Web Portals as Science Gateways (Marlon Pierce) | Week 8b |
|
| 3/7 | Web Service Foundations: WSDL and SOAP (Marlon Pierce) | Week 9a |
|
| 3/9 | Computational Chemistry Approaches (Kevin Gilbert) | Week 9b |
|
| 3/14, 3/16 | Spring Break: No Class | Week 10 | |
| 3/21 | eScience and Data Grids (Beth Plale) | Week 11a |
|
| 3/23 | Working at the Interface Between Proteomics and Informatics at IU (Randy Arnold) | Week 11b | |
| 3/28 | No class: attend 3/22 CICC quarterly meeting if possible | Week 12a | |
| 3/30 | Systems Biology or Complex Systems: A Biochemist's Perspective Part 1 Part 2 (Santiago Schnell) | Week 12b | |
| 4/4 | Discussion of progress reports and expectations on projects/papers | Week 13a |
|
| 4/6 | Chemogenomics and Pharmacogenomics (Horst Hemmerle, Lilly) | Week 13b |
|
| 4/11 | Bridging Bioinformatics and Cheminformatics (Gary Wiggins) | Week 14a | |
| 4/13 | Ivory Towers vs Duct Tape and Baling Wire: First Principles and Empiricism in Modeling (Bob Clark, Tripos) | Week 14b |
|
| 4/18 | Integration of Chemical Text Tools with Connotea and CiteULike (Geoffrey Fox) | Week 15a |
|
| 4/20 | CICC Project: Varuna: a database of quantum mechanical simulations (Mookie Baik) | Week 15b | |
| 4/25 | Optional class: Work session on CICC Projects and Papers | Week 16a |
|
| 4/27 | Presentations on CICC Projects | Week 16b |
|
| Th, 5/4, 6:45 PM |
Project /
Paper |
||
| DATE | TOPIC | SUPPLEMENTAL READINGS |
HOMEWORK DUE ON THIS DATE |