I590 Schedule Spring 2006
Tuesdays and Thursdays, 1:00-2:15 PM
Updated: 23 April 2006
| DATE |
TOPIC |
SUPPLEMENTAL
MATERIALS |
HOMEWORK DUE ON THIS DATE |
| 1/10 |
Commercial Vendors and Databases |
Week 1a |
|
| 1/12 |
Overview of the Course and Software to be Used /
STN Express with Discover! and STN on the Web /
SciFinder Scholar: Review and Overview of New Features
|
Week 1b |
|
| 1/17 |
UCD99:
Introduction / Online Searching Basics / Online Searching Costs
UCR99:
Overview of the Registry File / Cost of Searching in Registry
SSCAS:
Cost of Structure Searching in the Registry File
|
Week 2a |
|
| 1/19 |
UCD99:
Search Strategy /
Text Searching Pt 1: Strategies To Increase Number of Answers /
Pt 2: Strategies To Decrease Number of Answers
|
Week 2b |
Exercise 1 |
| 1/24 |
UCD99:
Searching Author Names / Refining Searches /
Substance Searching Using CAS Registry Numbers, etc.
|
Week 3a |
|
| 1/26 |
Field trip to Indy: Leave at 10:00 from Eigenmann lobby (1st fl.)
|
Week 3b |
|
| 1/31 |
CAS e-Seminar: Using Discover! Wizards in STN Express 48943173/800.203.2706
|
Week 4a |
|
| 2/2 |
UCR99:
Searching Chemical Names /
Searching Name Segments / Searching the Molecular Formula
Searching for Salts /
Searching for Mixtures UCR99:
Searching for Stereoisomers /
Supplementary Information
|
Week 4b |
|
|
2/7 |
GTxx:
CrossFire Gmelin I. Structure Query / Fact Query / SSS with Structure Editor /
SSS with Fact Editor |
Week 5a |
|
|
2/9 |
GTxx:
CrossFire Gmelin II. Searching Substances Possessing
a Certain Property / SSS with User-Defined Atom Lists and Generic Groups +
Factual Query / Preparation
|
Week 5b |
Exercise 2
|
|
2/14 |
BTxx:
CrossFire Beilstein I. Introduction /
Substructure Searching |
Week 6a |
|
|
2/16 |
BTxx:
CrossFire Beilstein II. Hyperlinks /
Reaction Searching / Generic Searching |
Week 6b |
|
| 2/21 |
The Use of the Lawson Number in Beilstein Searching
|
Week 7a |
|
|
2/23
|
SSCAS6:
Overview of Structure Building with STN Express /
Types of Structure Searches in Registry
|
Week 7b |
Exercise 3
|
|
2/28
|
SSCAS6:
Refining Substructure Search Queries to Increase
Precision / Refining Substructure Search Queries to Broaden Retrieval /
Adding Variability to the Structure
|
Week 8a |
|
| 3/2 |
PubChem,
ChEBI and other
free chemistry databases
|
Week 8b |
Exercise 4
|
| 3/7 |
PubChem,
ChEBI and other
free chemistry databases
|
Week 9a |
|
| 3/9 |
PubChem,
ChEBI and other
free chemistry databases
|
Week 9a |
|
| 3/14, 3/16 |
Spring Break: No Class |
Week 10 |
|
| 3/21 |
Overview of bioinformatics / Data acquisition /
Databases /
DRW02, Sections A, B, C
|
Week 9b |
|
| 3/23 |
Retrieval of biological data / Searching sequence databases by
sequence similarity criteria / Multiple sequence alignment: gene
and protein families /
DRW02, Sections D, E, F
| Week 11a |
|
| 3/28 |
NO CLASS
| Week 11b |
|
| 3/30 |
Phylogenetics / Sequence annotation / Structural bioinformatics
DRW02, Sections G, H, I
| Week 11b |
|
| 4/4 |
Microarray data analysis / Proteomic data analysis /
Higher order systems
DRW02, Sections J, K, L
| Week 12a |
|
| 4/6 |
Cheminformatics in biology / Bioinformatics in the pharmaceutical industry /
Basic principles of computing in bioinformatics
DRW02, Sections M, N, O |
Week 12b |
|
| 4/11 |
Sequence Searching in REGISTRY on STN
|
Week 12b |
|
| 4/13 |
Other Life Sciences Databases: Medline and other
NLM Gateway databases
|
Week 13a |
|
| 4/18 |
Other Life Sciences Databases: BIOSIS and others
|
Week 13b |
|
| 4/20 |
CSD:
Journal / Compound Name / Substructure
|
Week 14b |
|
| 4/25 |
CSD:
SSS with 2D Constraints
|
Week 15a |
Exercise 5
|
| 4/25 |
CSD:
Defining and Saving Geometric Parameters / 3D SSS / Search for Nonbonded
Interactions
|
Week 15b |
|
| 4/27 |
CSD:
Pharmacophore Search / More Complex Combinations of Queries /
Coordination of Heme-Iron;
CCDC's IsoStar and Other Products
|
Week 16a |
T. Jones' CSD & other exercises
|
|
4/27 |
Open Access; Open Data
|
Week 16b |
In-Class
Exercise 6 |
| Th, 5/4, 2:45 PM |
|
|
Project /
Paper
|
| DATE |
TOPIC |
SUPPLEMENTS |
HOMEWORK DUE
ON THIS DATE |
