PBS commentary
http://www.pbs.org/wgbh/evolution/library/01/1/l_011_01.html

Darwin's quote... complete version: (many of the links are dead)
http://home.austarnet.com.au/stear/evolution_of_the_eye.htm

Evolution of eye Russell Fernald, Stanford
http://www.karger.com/gazette/64/fernald/art_1_0.htm

Carl Zimmer
http://www.corante.com/loom/archives/2005/02/15/eyes_part_one_opening_up_the_russian_doll.php

http://www.corante.com/loom/archives/2005/02/16/eyes_part_two_fleas_fish_and_the_careful_art_of_deconstruction.php

EMBL Research:
http://www.embl.org/aboutus/news/press/2004/press28oct04.html

Evolution of color vision
http://www.talkorigins.org/faqs/vision.html

Lens gene connection
http://www.medilexicon.com/medicalnews.php?newsid=31008

Challenge to creationists
http://www.2think.org/eye.shtml

NSTA Q&A - Useful answers to a variety of common classroom questions. (Scroll about 2/3rds down for eye evolution question):
http://www.nsta.org/pbsevolution4

Eye evolution with diagrams
http://www.stephenjaygould.org/ctrl/futuyma_complex.html

Ken Miller interviewed on the Colbert Report (short video clip) on the evolution - creationism "conflict" (funny)
http://www.millerandlevine.com/talks/colbert.html

Ken Miller's Evolution Resources
http://www.millerandlevine.com/km/evol/index.html