Selected Publications:

J.P. Reilly, “Laser Ionization Tutorial” in Encyclopedia of Mass Spectrometry, Vol. 6, (edited by Michael L. Gross), Elsevier Publishing, (2006).

R.L. Beardsley, W.E. Running, J.P. Reilly, “Probing the structure of the Caulobacter crescentus ribosome with chemical labeling and mass spectrometry”, J. Proteome Res. 5 , 2935-2946 (2006).

L. Zhang, W. Cui, M.S. Thompson, J.P. Reilly , “Structures of a-type ions formed in the 157 nm photodissociation of singly-charged peptide ions”, J. Am. Soc. Mass Spectrom., 17 1315-1321 (2006).

H. Tang, R. J. Arnold, P. Alves, Z. Xun, D.E. Clemmer, M.V. Novotny, Reilly, J. P.; P. Radivojac, “A computational approach toward label-free protein quantification using predicted peptide detectability” Bioinformatics, 22 (14), e481-e488 (2006).

J.A. Karty, W.E. Running, J.P. Reilly, “Two dimensional liquid phase separations of proteins using online fractionation and concentration between chromatographic dimensions”, J. Chromatog. B 847, 103-113 (2007) .

M.S. Thompson, W. Cui , J.P. Reilly, “Factors that impact the vacuum ultraviolet photofragmentation of peptide ions”, J. Am. Society for Mass Spectrom., 18, 1439-1452 (2007).

W. Running, S. Ravipaty , J. Karty and J.P. Reilly, “A Top–down/bottom-up study of the ribosomal proteins of Caulobacter crescentus ”, J. Proteome Res.6, 337-347 (2007).

A. Devakumar, Y. Mechref, P. Kang, M.V. Novotny, J.P. Reilly, “Laser-Induced photofragmentation of neutral and acidic glycans inside an ion-trap mass spectrometer”, Rapid Commun. Mass Spectrom. 21, 1452-1460 (2007).

X. Liu, W.C. Broshears and J. P. Reilly, “Probing the structure and activity of trypsin with amidination”, Anal. Biochem., 367, 13-19 (2007).

Yi He and J.P. Reilly, “Does a charge tag really provide a fixed charge?, Angewandte Chemie., 120, 2497-2499 (2008).

A. Devakumar D.K. O'Dell, J. M. Walker and J.P. Reilly, “Structural analysis of leukotriene C₄ isomers using collisional activation and VUV photodissociation”, J. Am. Soc. Mass Spectrom., 19 14-26 (2008).

R. J. Arnold, William Running and J.P. Reilly, “Analysis of Methylation, Acetylation and other Modifications in Bacterial Ribosomal Proteins” Chap. 11, pgs, 151-161, Post-translational Modifications of Proteins, Tools for Functional Proteomics, 2nd Edition , Kannicht, Christoph (Ed.), Methods in Molecular Biology, Vol 446 (2008).

L. Zhang and J.P. Reilly, Use of 157 nm photodissociation to probe structures of y- and b-type ions produced in collision induced dissociation of peptide ions, J. Am. Soc. Mass Spectrom., 19 (5) 695-702 (2008).