>MPhage_Bxz1_0102 Mycobacteriophage Bxz1 pre-tmRNA AY129337:100059-100495; NC_004687:100059-100495
GGGCCUGACAAGGUUUCGACUGGUCGAUGGACAACUGAACAGCGGGCGAGUGUUGGCCGCACUUCUACUCUGAGUGAACG
CGGCAACUGAUAAACGCAACCGACACGGAUGCAACGGUGACCGACGCCGAGAUCGAGGCCUUCUUUGCUGAAGAGGCUGC
CGCUCUCGUCUGAAGGAACCAGCCUGGCUCAGCGUGCUGCUGUGCAGCGGCCAGGCUUCAUCUCUAACAGCAGCGAACGG
ACAUGAGGGAGCGCAAACCCUCGUCCCAAACAUCAUGAAUGCGUCGCACGGGCUCCAGCGUCAGGGGCCAGAGGUGGGAA
ACGGUGUGAAACUCCUGUCCUGGGGAUCACCGACCGAUACGCCAAACCAGGACUACGCCCGUAGAACGCAGUGAGAAAGA
CACCAGGACAGGGGUUCGAGUCCCCUCAGGUCCACgu
>BaciPhage_G_0104 Bacillusphage G pre-tmRNA
GGGAUUGUUAAGGAUUCGACAGGGGAAAAUAGUAUAAGACAUGAUACUCGUAAAGCAUACGUUACAUGCUAAGUUAAAUA
UAACUAACAACGAAUUACAAGUAGCCUAGUUAAUAGGUGCCAAAACAAUAGAGUUGCUCUAACAUCUAUUUGAGGUUCAA
AGAUUUGAGCUAUUUCUUACUUUAGAAUAAAGUAAGUGGUGGAGCCUAGAGAAAACGCUGUAGAAACUAACUAUUCAAAU
UGUAAAUGGUAUCAAACAAGUGUCUAUAUGAAAGUCUUCUGGACGCGGGUUCGACUCCCGCCAGUUCCAuau
>Uncul_farm3_0686 Uncultured farm3 tmRNA AAFX01035522:635-271
GGGGCUGACAGGAAUCGACAGUAGAGUGUAUCAUGUCAGUAAGCAUGCCGGGGAAUGGUGGUUUACCCCGUUAUCAAAUG
AUUACCGACCAAUAAUUGGCGAAACUCGUUUCGCGUUGGCUGCCUAAUUCAAGGAAUUAGCGUGCCUUCAUGCUAAGGGU
UUGAUAUCUGCUAAAACCCGGUGCAUUCAUCAAUGCAGGUUAAGCCAAAGGGAUGUCCCGACCGGAGGCCGACAAUCCAG
GGAACCGGAUGUCAUCACGUUGUUGCAGUACCAGAUGGCAUCUUAAAUCCGAUCUGCAAAUAAGCAUGUAGAAAGCUGAU
GUGGGCUUUAGCUGGACGGGGGUUCAAUUCCCCCCGGCUCCACCA
>Uncul_farm8_0687 Uncultured farm8 tmRNA AAFX01004374:206-561
GGGGGCGAUCGGUUUCGACGGGGGUCGCGAAAUCGCCUGGAGCAUGCCGAGGGCGUCAUCUUCCUCGUUAAUCCGGUGGC
AAAAAACUCAGACGCCAACGACGACGUCUACGCUGUAGCCGCUUAAGGCUUAAGCCCCGAACCCACUUGUGCCUGUGCUC
GUGGAUGUAGGGUCACUAUCACGGGAUCGCUGCUGGUUGCCGUCCGUCGGCCAGCGGUUAACCUAAAACGGGCUGGUCCU
UCGGUGCGCUUUGCACGCCGUGUUGCCGCGGGACGAGACCAAAACGGCGCGCUAAGCAUGUAGCGCCGGGGAUGUAGCGC
CUUCGGACGGGGGUUCAAUUCCCCCCGCCUCCACCA
>Aquif_aeoli_0105 Aquifex aeolicus tmRNA AE000657:1153844-1153498; NC_000918:1153844-1153498
GGGGGCGGAAAGGAUUCGACGGGGACAGGCGGUCCCCGAGGAGCAGGCCGGGUGGCUCCCGUAACAGCCGCUAAAACAGC
UCCCGAAGCUGAACUCGCUCUCGCUGCCUAAUUAAACGGCAGCGCGUCCCCGGUAGGUUUGCGGGUGGCCUACCGGAGGG
CGUCAGAGACACCCGCUCGGGCUACUCGGUCGCACGGGGCUGAGUAGCUGACACCUAACCCGUGCUACCCUCGGGGAGCU
UGCCCGUGGGCGACCCGAGGGGAAAUCCUGAACACGGGCUAAGCCUGUAGAGCCUCGGAUGUGGCCGCCGUCCUCGGACG
CGGGUUCGAUUCCCGCCGCCUCCACCA
>Sulfh_azore_0106 Sulfurihydrogenibium azorense pre-tmRNA
GGGGGCGAUACGGGUUCGACGGCAAGAGCAGGCAAAGGGAAGCAUGCCGUAGAAGGCCACUACGUAAAAAACCAAAACAA
AACAAUUCCCGAACGCGAAAUCGCUCUCGCUGCUUAAUUAACGCAGCGACGUCCUACCCGGUUUGCCUGUAGGCUGGGAU
AGGGCGUAAGACAUACAGGAUAGGAGGUUGCCAACCUCCCCUGAGGUAACCUCCGAAACUCUACGGGGAUAGCUUCUCUC
CUCCUGCCUGUGGGAAAGAGAGAAGCGAAACUCAAACACAGGCUAAGCAUGUAGAUGCCCUACUGCUUAGGCUCUUGUCG
GACGGGGGUUCGAUUCCCCCCGCCUCCACuc
>Thtog_mari1_0108 Thermotoga maritima tmRNA, version 1 {MSB8} AE000512:531684-532039; NC_000853:531684-532039
GGGGGCGAACGGGUUCGACGGGGAUGGAGUCCCCUGGGAAGCGAGCCGAGGUCCCCACCUCCUCGUAAAAAAGGUGGGAC
AAAGAAUAAGUGCCAACGAACCUGUUGCUGUUGCCGCUUAAUAGAUAAGCGGCCGUCCUCUCCGAAGUUGGCUGGGCUUC
GGAAGAGGGCGUGAGAGAUCCAGCCUACCGAUUCAGCUUCGCCUUCCGGCCUGAAUCGGGAAAACUCAGGAAGGCUGUGG
GAGAGGACACCCUGCCCGUGGGAGGUCCCUCCCGAGAGCGAAAACACGGGCUGCGCUCGGAGAAGCCCAGGGGCCUCCAU
CUUCGGACGGGGGUUCGAAUCCCCCCGCCUCCACCA
>Thtog_mari2_0109 Thermotoga maritima tmRNA, version 2 (ends unsequenced) {MSB8}
GGGGAUGGAGUCCCCUGGGAAGCGAGCCGAGGUCCCCACCUCCUCGUAAAAAAGGUGGGACAAAGAAUAAGUGCCAACGA
ACCUGUUGCUGUUGCCGCUUAAUAGAUAAGCGGCCGUCCUCUCCGAAGUUGGCUGGGCUUCGGAAGAGGGCGUGAGAGAU
CCAGCCUACCGAUUCAGGCUUCGCCUUCCGGCCUGAAUCGGGAAAACUCAGGAAGGCUGUGGGAGAGGACACCCUGCCCG
UGGGAGGUCCCUCCCGAGAGCGAAAACACGGGCUGCGCUCGGAGAAGCCCAGGGGCCUCCAUCUUCGGACGGGGGUUC
>Thtog_neapo_0110 Thermotoga neapolitana tmRNA
GGGGGCGAACGGGUUCGACGGGGAUGGAGUCCCCUGGGAAGCGAGCCGAGGUCCCCACCUCCUCGUAAAAAAGGUGGGAA
CACGAAUAAGUGCCAACGAACCUGUUGCUGUUGCCGCCUAAUAGAUAGGCGGCCGUCCUCUCCGGAGUUGGCUGGGCUCC
GGAAGAGGGCGUGAGGGAUCCAGCCUACCGAUCUGGGCUCCGCCUUCCGGCCCGGAUCGGGAAGGUUCAGGAAGGCUGUG
GGAAGCGACACCCUGCCCGUGGGGGGUCCUUCCCGAGACACGAAACACGGGCUGCGCUCGGAGAAGCCCAGGGGCCUCCA
UCUUCGGACGGGGGUUCGAAUCCCCCCGCCUCCACCA
>Thdsb_commu_0107 Thermodesulfobacterium commune tmRNA
GGGGGCGAAAAGGGCUCGACGGGGAUAGGUAGGAUUAAACAGCAGGCCGUGGUCGCACCCAACCACGUUAAAUAGGGUGC
AAAAACACAACUGCCAACGAAUACGCCUACGCUUUGGCAGCCUAAGCGUGCUGCCACGCACCUUUAGACCUUGCCUGUGG
GUCUAAAGGUGUGUGACCUAACAGGCUUUGGGAGGCUUAAUCGGUGGGGUUAAGCCUCCCGAGAUUACAUCCCACCUGGU
AGGGUUGCUUGGUGCCUGUGACAAGCACCCUACGAGAUUUUCCCACAGGCUAAGCCUGUAGCGGUUUAAUCUGAACUAUC
UCCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Deinc_radio_0118 Deinococcus radiodurans tmRNA AE000513:863322-863670; NC_001263:863322-863670
GGGGGUGACCCGGUUUCGACAGGGGAACUGAAGGUGAUGUUGCGUGUCGAGGUGCCGUUGGCCUCGUAAACAAACGGCAA
AGCCAUUUAACUGGCAACCAGAACUACGCUCUCGCUGCUUAAGUGAGAUGACGACCGUGCAGCCCGGCCUUUGGCGUCGC
GGAAGUCACUAAAAAAGAAGGCUAGCCCAGGCGAUUCUCCAUAGCCGACGGCGAAACUUUAUGGAGCUACGGCCUGCGAG
AACCUGCCCACUGGUGAGCGCCGGCCCGACAAUCAAACAGUGGGAUACACACGUAGACGCACGCUGGACGGACCUUUGGA
CGGCGGUUCGACUCCGCCCACCUCCACCA
>Deinc_geoth_0119 Deinococcus geothermalis tmRNA AAHE01000001:167513-167860; NZ_AAHE01000001:167513-167860; AL724155:231-136
GGGGGUGACCCGGUUUCGACAGGGGAACUGAAGGUGAUGCUGCGUGUCGAGGUGCCGUUGGCCUCGUGAACAAACGGCAA
AGCCAUUAACUGGCAACCAGAACUACGCUCUCGCUGCUUAAGUGAGACAGUGACCGCCGAGCCCGGCCUUUGGCGCGGCG
CGAACUGAACCAAAAGAAGGCUAGCCCCGGCGAGGUUCCAUAGCCGCAGGCGAAACUCCAUGGAAAUACGGUCUGGGCGA
GCCUGCCCGCUGGCGCUCCCCGACCCGACAACAAAAAAGCGGGCUACACACGUAGACGCACGCUGGAAGGACUCUUGGAC
GGCGGUUCGACUCCGCCCACCUCCACCA
>Thmus_ther1_0116 Thermus thermophilus tmRNA, version 1 {HB8} Z48001:220-1; Y15063:86-434
GGGGGUGAAACGGUCUCGACGGGGGUCGCCGAGGGCGUGGCUGCGCGCCGAGGUGCGGGUGGCCUCGUAAAAACCCGCAA
CGGCAUAACUGCCAACACCAACUACGCUCUCGCGGCUUAAUGACCGCGACCUCGCCCGGUAGCCCUGCCGGGGGCUCACC
GGAAGCGGGGACACAAACCCGGCUAGCCCGGGGCCACGCCCUCUAACCCCGGGCGAAGCUUGAAGGGGGCUCGCUCCUGG
CCGCCCGUCCGCGGGCCAAGCCAGGAGGACACGCGAAACGCGGACUACGCGCGUAGAGGCCCGCCGUAGAGACCUUCGGA
CGGGGGUUCGACUCCCCCCACCUCCACCA
>Thmus_ther2_0117 Thermus thermophilus tmRNA, version 2 {HB8, HB27} AY911525:1-305; AP008226:666084-666432; NC_006461:666084-666432; AE017221:336629-336977; NC_005835:336629-336977
GGGGGUGAAACGGUCUCGACGGGGGUCGCCGAGGGCGUGGCUGCGCGCCGAGGUGCGGGUGGCCUCGUAAAAACCCGCAA
CGGCAUAACUGCCAACACCAACUACGCUCUCGCGGCUUAAUGACCGCGACCUCGCCCGGUAGCCCUGCCGGGGGCUCACC
GGAAGCGGGGACACAAACCCGGCUAGCCCGGGGCCACGCCCUCUAACCCCGGGCGAAGCUUGAAGGGGGCUCGCUCCUGG
CCGCCCGUCCGCGGGCCAAGCCAGGAGGACACGCGAAACGCGGACUACGCGCGUAGAGGCCCGCCGUAGGGACCUUCGGA
CGGGGGUUCGACUCCCCCCACCUCCACCA
>Uncul_humn3_0643 Uncultured human3 tmRNA (ends unsequenced) AI752555:235-9
CGUAAAAACCCGCGAAACCACAAAGGCCAACAAGCCUGCUGCUCUCGCGGCUUAAUGACCGCGACCUCGCCCGGUGGCCC
UGCCGGGGGCUCACCGGAUGCGGGGACACAAACCCGGCUAGCCUGGGGCCACGCCCCCUAACCCCAGGCGAAGCGCAAGG
GGGCUCGCCCCUGGCCGCCCGUCCGCGGGCUAAGCCAGGGGGACACCUAAAACGCGGACUACGCGCG
>Chlfl_auran_0113 Chloroflexus aurantiacus tmRNA AY040836:1-317; AAAH02000040:1626-1266; NZ_AAAH02000040:1626-1266
GGGGAUGCUCUGGUUUCGACAGGGAGUGAACGCCGUAGACUGCAGGUCGUGCCGCCCAGUCACGUAAAAGGGGCAAGGCA
ACAACUGCCAACACCAACACUCGGGCCCAGGCUCGCCUGGCCCUCGCCGCUUAAUAAUAGCGGCGCGCUCGCCGUAGCUC
CCCCGAUGGUUACGGGUCGAGCGUCAGCAGUCGGGUGCUCCGGUAACGCCUGCCUGAGCGUUAUCGGCUAAGAGAUCAGG
CUGGCCCAACGGUCGCUUUGCCACUCGUGCGACUGCGGGUGAGAUGAAACGAGGGGCUAAACCUGUAGAUGUCUGCGGUC
UAGCUUUCUGGACGGGGGUUCGACUCCCCCCAUCUCCACCA
>Thmic_roseu_0114 Thermomicrobium roseum tmRNA
GGGGAUGACUGGAUUCGACAGGGCCGUAGGUGCGAGGAUUGCAGGUCGAGGUCGCCCACGAACUCGUAAAAAGGGGCAGC
CAAGUAACUGGCGAGCGCGAACUCGCUCUGGCUGCGUAAUUCACGCAGCCACGUCUGCCCGGACCCUUCCCUGGUGGGUU
CGGAGCGGGCGCCGCAAGACCGGGGUGCCCCUGGCCCAAGCGCCGGUGCGGGCCAGGUCAAGCGUGAUCCGGCUCGGCUG
ACCGGGAUCCUGUCGGUGGGAGCCUGGCAGCGACAGUAGAACACCGACUAAGCCUGUAGCAUAUCCUCGGCUGAACGCUC
UGGACGGGGGUUCGACUCCCCCCAUCUCCACCA
>Dehco_ethen_0115 Dehalococcoides ethenogenes tmRNA CP000027:1361697-1362048; NC_002936:1361697-1362048
GGGGACGCGUGGUUUCGACAGGGAAGGUAGGCUACUGGAUUGCAGGCUGAGGUGCCAUCCACCUCAUUAAACAGGUGGCA
AAAAACAACUGGCGAACGUGAACUCGUUCUUGCUGGCUAAAUAAGACAGCACAUCCUGCUUGGCCCCACCUCAACGGGUC
AGGUUUGGGUGCCGAUUAGUUGAGGUGCCGUUUCCCCAACGCCGAUGAGGGGGACGAAAGAAAUAUCGGCUGGUUUGGCU
AAAUUAGGCCGGCAAAAGCUAGCCAGACAAGAUUAAAUAGACGGAUAAUCCUGUAGUAGAUCCUGGGUCACCUUUUCUGG
ACGGGGAGUUCGACCCUCCCCCGUCUCCACCA
>Leptm_ferro_0196 Leptospirillum ferrooxidans tmRNA (5-prime end unsequenced) AY204390:768-425
GGGGAUGAGAAAGCAAGAAUCGCAUGCCGAGGACUCCUGGCUCCUCGUAAAUCAUCCGGGAAACAACACAACUGCCAACA
ACGAAAUGGCACUUGCUGCCUGAUCUAAAAGUCAGGUGAGCUAGCGUCUACCGGUACCAGUGCCUGUCCUGGUCCGGAGG
CGUCGAGAUGACAGGAUGGCUUCCGGAACCCGCCUGGGUUCCGCUAGCGACACAGAUCCAGGCUCGCGGCGAAAAGGGUG
UGUCCUUUCUCCCUCUAGUGGCCAGACAAAAAAAAGGGCUAAGCAUGUAGUGGUUCUUAGCGGACUGUUUCCGGACGCGG
GUUCGAUUCCCGCCGCCUCCACCA
>Leptm_grup2_0197 Leptospirillum groupII tmRNA AADL01000021:23610-23252
GGGGGCGAUCGGGUUCGACGGGGAUGAGAAAGCAAGGACAGCAUGCCGAGGUCCCAGGUCCUCGUAAAACCUUUGGGAAA
AAGACAACUGCCAACGAAGAGCUGGCUCUCGCUGCUUAAUCUAAACAAUUAAGUGAGCGCGCUUAUCGGAUUUUGCGCCU
GCCCGGAUCCGAAGGCGUGGAGAAGGCAGGAUCGCCAAGGGAACAUGCCUGGGUUCCCGAGGUUAAACCCUUACAGGCUC
GCUGAUGACGGGUACGCCCCUCUUUCCCGUCGUUGGUCAGACUUAAACAGGGGCUAAGCAUGUAGCGGUUCUUGGCGGAC
UGUUUCCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Leptm_grup3_0198 Leptospirillum groupIII tmRNA AADL01000160:2071-2429
GGGGGCGAUCGGGUUCGACGGGGAUGAGAAAGCAAGGACAGCAUGCCGAGGUCCCAGGUCCUCGUAAAACCUUUGGGAAA
AAGACAACUGCCAACGAAGAGCUGGCUCUCGCUGCUUAAUCUAAACAAUUAAGUGAGCGCGCUUAUCGGAUUUUGCGCCU
GUCCGGGUCCGAAGGCGUGGAGAAGGCAGGAUCGCCAAGGGAACAUGCCUGGGUUCCUGAGGUUAAACCCUUACAGGCUC
GCUGAUGACGGGUACGCCCCUCUUUCCCGUCGUUGGUCAGACUUGAACAGGGGCUAAGCAUGUAGCGGUUCUUGGCGGAC
UGUUUCCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Therv_yello_0195 Thermodesulfovibrio yellowstonii tmRNA
GGGGGCGAAAGGACUCGACGGAGGUAGUGAGGGCUAAGCUGCAUGCCGUGGUUCCUGCCACCACGUAAAACAGGUAGGGA
AAACACAACUGCCAACAACGAAUUGGCACUCGCUGCUUAAUUAAAAGCAGCCGUCUUCCCAAGUUCUGCUCUGAGGCUUG
GGCAAGGCGUCAUAAAUCAGAGCUAUCCUAAGGCACAAACCCGAUGCCUUAGGGAGAGCUAAGGGUUGUAGGAGCUUAGA
GAGCCUGUGGAAGGGCGAGCUAACUUCCGAAUCCUAAAACUUCCACUAAGCAUGUAGAUGCUUAGAAGUAGCACCUUCGG
ACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Gloeo_viola_0165 Gloeobacter violaceus pre-tmRNA (precursor permuted) BA000045:2366579-2366322; NC_005125:2366579-2366322
ACUAGGGUGCGUGAUCGGCUGUUCUGGACAGGGGUUCGAUUCCCCUCAUCUCCACCAacucGGGGAUGUACUGGCUUCGA
CAGGGCAAUUAGAGCGUAACUGAAGCCUGCUCGGUUAGAGCAAAAAACCAAGUGCUACUAACAACGUAGUUCCCUUCGCU
CGCGCCCGCGCUACUGUCGCGGCCUGAGUAAGGCGGGGUUGGUAGAUAACCUUGUAAACCAAAACUACCCAAAAGGCCCC
UUCGGGGGCCUUUUUGCU
>Proch_mari1_0162 Prochlorococcus marinus pre-tmRNA, version 1 (precursor permuted) {CCMP1986} BX572090:56592-56335; NC_005072:56592-56335
ACUAGGUGAUCUCAACCGAUGUUUCGGACAGCGGUUCGAUUCCGCUCAACUCCAuuuucauuuGGGGUUGUAAUGGUUUC
GACGGGGCGUAAGGAAGAUGACUGAAGCCUGCUCGGUUAGAGCAAAAACACAAACGCUAACAAAAUCGUUAGUUUCUCCC
GUCAAACAGCACCAGUUGCUGCUUGAUCUCAAAGGAGAUGGGGUGAUAUCAGCCUUAUCAACCAAAUGAUCCAAGGAGCC
UGGAAGGGCUCCACCAUU
>Proch_mari2_0163 Prochlorococcus marinus pre-tmRNA, version 2 (precursor permuted) {MIT 9313} BX572099:282877-282607; NC_005071:1677897-1677627
ACUAGGUGAUCCACACCAGUGUCUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuuccucuuuuaggugucuuGGGGCUG
CAAUGGUUUCGACGGGGUAUGAGGAGGGUGACUGAAGCCUGCUCGGUAAGAGCAAAUCCGUAACUGCGAACAACAUCGUU
CGUUUCUCCCGUCAGCCUGCCCUCGUGGCUGCCUGACCCUAAUAAGGGAGAUGGGGUGAGGUCAGCCUUAUCACCCAAAU
GACCCAUGGGGGCUGCGAGGCCCCUUUAACU
>Proch_mari3_0164 Prochlorococcus marinus pre-tmRNA, version 3 (precursor permuted) {CCMP1375} AE017126:75579-75321; NC_005042:75579-75321
ACUAGGUGAUUCACACCAUUAUCUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAucuauucuGGGGCUGCAAUGGCUUCG
ACGGGGUUCUAGGAGUUUGACUGAAACCUGCUCGGUUAGAGCAAAACCAUAACUGCUAACAAAAUCGUUAGUUUCUCCCG
UCAAACAGCACCUGUUGCUGCUUGACCUUAUAAAGGAGAUGGGGUUAGAUCAGCCUUAUCAACCAAAUGAUCCAUUGGGC
UUGGAAGAGCCCUUUUCAU
>Proch_mari4_0700 Prochlorococcus marinus pre-tmRNA, version 4 (precursor permuted) {NATL2A} CP000095:1387414-1387161; NC_007335:1387414-1387161
ACUAGGUGAUUCACACCAGUAUCUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuaaauGGGGCUGCAAUGGUUUCGACG
GGGUAUCAGGAGAGUGACUGAAGCCUGCUCGGUCAGAGCAAAACCAUAACUGCUAACAACAUCGUUAGUUUCUCCCGUCA
AACAGCCCCUGUUGCUGCUUGAUCUUUUAGGAGAUGGGGUCAGGUCAUCCUUAUUACCCAAUUGAUCCAUGGAGCCUGGA
AGGGCUCCUUUUUA
>Cyanbi_6307_0161 Cyanobium gracile pre-tmRNA (precursor permuted) AF251551:139-429
ACUAGGUGGUCCACACCAGUGUCUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuucccccgacccaccgccccgcaggc
ggugcgucaucccGGGGCUGCAAUGGUUUCGACGGGGCAUGAGGAGGGUGACUGAAGCCUGCUCGGUCAGAGCGAACCCG
UAACAGCGAACAACAUCGUUCGUUUCUCCCGUCAAGCCGCCCCCGUGGCUGCCUGACACUCUUAACGGAGACGGGGUGAG
GUCAGCCUUGUCACCCAAAUGACCCAUGGGGCCUGGAAGGGCCCUUCCCAU
>Syncoc_9311_0158 Synechococcus CC9311 pre-tmRNA (precursor permuted)
ACUAGGUGGUCCACACCGGUGUUUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuucucccuucGGGGCUGCAAUGGUUU
CGACGGGGCAUAAGGAGGGUGACUGAAGCCUGCUCGGUAAGAGCAAAUCCCGUAACUGCGAACAACAUCGUACGUUUCUC
CCGUCAAGCAGCCCCUGUUGCUGCCUGACCCUAUUAAGGGAGAUGGGGUGAAGUCAGCCUUAUCACCCAAGUGACUCGUG
GGGGUGGAAUGCCCCCUUAAAUC
>Syncoc_9902_0701 Synechococcus CC9902 pre-tmRNA (precursor permuted) CP000097:444541-444806; NC_007513:444541-444806
ACUAGGUGAUUCACACCAGUGUUUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuuccuccccucuuGGGGCUGCAAUGG
UUUCGACGGGACAUAAGGAGGGUGACUGAAGCCUGCUCGGUUAGAGCAAAUCUCGUAACUGCGAACAACAUCGUACGUUU
CUCCCGUCAAGCAGCCCCUGUUGCUGCCUGACCCUUUUAAGGGAGAUGGGGUGAAGUCAGCCUUAUCACCCAAAUGACUG
CUUGGGGGUGGAAGCCCCCCUUCAAC
>Syncoc_7009_0159 Synechococcus PCC7009 pre-tmRNA (ends unsequenced) (precursor permuted) AY082654:2-254
GUGUUUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuucccccgacccaccgccccgccggcggugcgucaucccGGGGC
UGCAAUGGUUUCGACGGGGCAUGAGGAGGGUGACUGAAGCCUGCUCGGUAAGAGCGAACCCGUAACAGCGAACAACAUCG
UUCGUUUCUCCCGUCAAGCCGCCCCCGUGGCUGCCUGACACUCUUAACGGAGACGGGGUGAGGUCAGCCUUGUCACCCAA
AUGACCCAUGGGG
>Syncoc_6904_0160 Synechococcus PCC6904 pre-tmRNA (ends unsequenced) (precursor permuted) AY082655:2-254
GUGUCUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuucccccgacccaccgccccgccggcggugcgucaucccGGGGC
UGCAAUGGUUUCGACGGGGCAUGAGGAGGGUGACUGAAGCCUGCUCGGUCAGAGCGAACCCGUAACAGCGAACAACAUCG
UUCGUUUCUCCCGUCAAGCCGCCCCUGUGGCUGCCUGACACUCUUAACGGAGACGGGGUGAGGUCAGCCUUGUCACCCAA
AUGACCCAUGGGG
>Syncoc_9605_0702 Synechococcus CC9605 pre-tmRNA (precursor permuted) CP000110:2063593-2063332; NC_007516:2063593-2063332
ACUAGGUGAUCCACACCAGUGUUUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuucccccucacGGGGCUGCAAUGGUU
UCGACGGGGCAUGAGGAGGGUGACUGAAGCCUGCUCGGUGAGAGCAAACCCGUAACUGCGAACAACAUCGUUCGUUUCUC
CCGUCAAGCAGCCCCUGUUGCUGCCUGACCCUUUAAGGGAGAUGGGGUGAGGUCAGCCUUAUCACCCAAAUGACUCAUGG
GGGCUGGAAGGCCCCCUCAACU
>Syncoc_8102_0157 Synechococcus WH8102 pre-tmRNA (precursor permuted) BX569689:342057-342321; NC_005070:342057-342321
ACUAGGUGAUCCACACCAGUGUUUCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuucacccuuccacaaGGGGCUGCAAU
GGUUUCGACGGGGCAUGAGGAGGGUGACUGAAGCCUGCUCGGUGAGAGCAAACCCGUAACUGCGAACAACAUCGUUCGUU
UCUCCCGUCACGCAGCCCCUGUUGCUGCCUGACCCUUAGGGGAGAUGGGGUGAAGUCAGCCUUAUCACCCAAAUGACUCA
UGGGGGCUGGAAGGCCCCUCAAACC
>Synco_elong_0156 Synechococcus elongatus pre-tmRNA AB003477:1390-1783; AP008231:631076-631469; NC_006576:631076-631469; CP000100:989730-989337; NC_007604:989730-989337
GGGGCUGUAAUGGUUUCGACGUGUUGGUGAAUCCUUCACCGUGAUUCAGGCCGAGAGGGAGUCCACUCUCGUAAAUCCAG
GCUCAACCAAAAGUAACUGCGAACAACAUCGUUCCUUUCGCUCGUAAGGCUGCUCCUGUAGCUGCUUAAACGCCACAAAC
UUUCUGGCUCGAGCGUCUAGUCGUAGACUCCGUUAAUACGCCUAGACUUAAACCCCCAACGGAUGCUCGAGUGGCGGCCU
CAGGUCCGUCCUCUCGCUAAGCAAAAACCUGAGCAUCCCGCCAACGGGGAUAAUCGUUGGCUCCCGCACAGUGGGUCAAC
CGUGCUAAGCCUGUGAACGAGCGGAAAGUUACUAGUCAAUGCGGACAGCGGUUCGAUUCCGCUCAGCUCCAuuu
>Syncoc_7002_0155 Synechococcus PCC7002 pre-tmRNA
GGGGCCGCAACGGUUUCGACAGGUUGGCGAAAGCUUCCACUGUGAUGCAGGUCGAGAGUGGGUCUCCUCUCGCAAAUCAA
AGAUCCAAACAAAAUGUAACUGCGAACAACAUCGUUCCUUUCGCUCGCAAAGCUGCUGCUGUAGCUUAAUAAGAACACCU
UAACUUAGGUUCGAGCAUUCAUAAUUCGACUCCGUUAAGGAUUAUGACUAAACCCCCAACGGAUGCUCUCUAGGAAUACA
UCUGGUUUGCACUAGAGCUAAGACUAGACCAGAGAUUCUUGGCGACUCGGAACAAGCAGUCGUUCCCGUUCUGAGGAUUA
GAAGAACUAAACCUGUGAAUGAGCUAGGGGUGAAUACCCAGUUUGGACAGCAGUUCGACUCUGCUCGGCUCCAuuu
>Syncys_6803_0152 Synechocystis PCC6803 pre-tmRNA BA000022:3317157-3316759; NC_000911:3317157-3316759
GGGGCCGCAAUGGUUUCGACAGGUUGGCGAAAGCUUGCCCGUGAUACAGGUCGAGAGUGAGUCUCCUCUCGCAAAUCAAA
GGCUCAAAAAAAAGUAACUGCGAAUAACAUCGUCAGCUUCAAACGGGUAGCCAUAGCAGCCUAGUCUGUAAAAGCUACAU
UUUCUUGUCAAAGACCGUUUACUUCUUUUCUGACUCCGUUAAGGAUUAGAGGUUAACCCCAACGGAUGCUUUGUUUGGCU
CUUCUCUAGUUAGCUAAACAAUCAAGACUCAGACUAGAGCAUCCCACCAUCAGGGAUAAUCGAUGGUCCCCGUCCUAGGG
CUAGAAGGACUAAACCUGUGAAUGAGCGGAAAGUUAAUACCCAGUUUGGACAGCAGUUCAAUUCUGCUCGGCUCCAuuu
>Croco_watso_0153 Crocosphaera watsonii pre-tmRNA AADV02000210:4102-3717; NZ_AADV02000210:4102-3717
GGGGCCGCAACGGCUUCGACAGGCUGGCGAAAUCCAAAUUGUGAUUCAGGUCGAGAGUGAGUCUCCUCUCGUAAAUACAA
GACUCAAAACAAUAGUAACUGCGAACAACAUCGUAAGCUUCAAGCGCGUAGCAGUAGCUGCGUAGAACUCUCUCAUAGAG
UCGCUUACCUCUGACCUGACUCCGUUAAGGACUCGGAGGUACCAACCCCAACGGAUGCCCUUAAUAGCUACCUCUGGUUG
GCUGUUGAGCUAAGACUACACCAGAGCAUCCCACCGUUCGGGAGAAUGAGCGGUUCCCGUCUGAGGGUCAGAAAGACUAA
GCCUGUGAAUGAGCGGUAGGUCAAUACCCAGUCUGGACAGCAGUUCGACUCUGCUCGGCUCCAuuc
>Thsyn_elong_0154 Thermosynechococcus elongatus pre-tmRNA BA000039:236043-236428; NC_004113:236043-236428
GGGGCUGAAACGGCUUCGACGUCCUAGUGAAAGUUGGGCUGUGAUGCAGGUCGAGAGUGGACUAUCUCUCGUUAAUCCAG
AGUCCAAGCCAAAAGUAACUGCGAACAACAUCGUUCCUUUCGCUCGUAAAGCUGCUGCGGUAGCCUAAGACCUCUAAACA
GGUUCGAGCACUCGUUGUCCGACUCCGUUAAGGGCAGCGGGUUAACCCCAACGGAUGCGCUAGACAGUUCUCUCUGGUGG
GCUGUUUAGCAAAGACUCGACCAGAGCAUCCUACUGUUCGGGAUAAGGAACAGUCCCCGCCUGAGGGUCAAAAAGGCUAA
GCCUGUGAAAGAGCAGUCGAUGAAUAGCUAGGGCGGACACGGGUUCGACUCCCGUCAGCUCCAuua
>Chrooc_6712_0151 Chroococcidiopsis PCC6712 tmRNA (ends unsequenced) AY082650:1-339
AGGUUGGCGAAAGCUAAUCUGUGAUGCAGGUCGAGAGUGAGUCGCCUCUCGGAAAUACAGGCUCAAAUCUAAAUAUAGAU
GCAAACAACAUCGUAAAAUUCGAGCGUCAAGCAGUAUUUGCUUAAGCCCAACUGAGGCUUGCUCGCUUUUAGUCCGACUC
CGUUAACGGCUAAAACGAAACCCCAACGGAUGCACCUUUUAGUUACUUUCGGUUGACUAAUUGCGUAAAGACUUCACCGA
AACAUCCUACUAUCAGGGAUAAUUGAUAGUUCCAGUUCUUGGGAUUAUAAGAACUAAACCUGUGAAUGAGCAGAAUGUCA
UUAUCCAGUCUGGACAGCA
>Oscill_6304_0149 Oscillatoria PCC6304 tmRNA (ends unsequenced) AY082651:1-347
AGUGGAGUGAAAGCUGCUCCGUGAUUCAGGCCGAGAGUGAGUUGUCUCUCGUCAAUCCCCAACUCAAAAAAAAAGUAAAU
GCGAACAACAUCGUUCCUUUCGCUCGUAAAGCGGCUCCUGUAGCUGCCUAAAAACCUCUAGCAGGUUUGAGCGGUCUAUA
GCUUGACUCCGUUAAAGGCUACAGACAAACCCUCAACGGAUGCUCUAGUAAGGUUUCUCUGGUUACUUGCUAGUUAAGAC
UCAACCUGAGUAUCCUGUCAUCCGGGAUAAUGGAUGGUCCCCGCCCAGAGGGUUAAAUGGGCUACGCCUGUGAAUGAGCG
GUAGGCGAAUACCUCUGCUACACAGCA
>Oscill_7515_0150 Oscillatoria sancta tmRNA (ends unsequenced) AY911518:1-351
AGGGUGGUGAAAUCUGCUUUGUGAUGCAGGUCGAGAGUGAGUCUUCUCUCGCAAAUACCGGGCUCAACAAAUAAUAAGUG
CAAACAACAUUGUACCUUUUGCUCGUAAGCAAGUAGCUGUAGCUUAAUUGCCGAAACGCCUCUUAUAGGUUCGAGCGUCU
GUGAUUUGACUCCGUUAAGGAUUGCAGACUUAACCCCAACGGAUGCACUAGCUCACUGCCUCUGGUCGGCUGCUGGUUAA
GACUUCACCGGAGAAUCCCGCCAUCUGGGAUAAUGGAUGGUCCCCGCCUUCAGGGUUAAGAUAGGCUAAACCUGUGAAUG
AUCGAAGAGUGAAUAGCCACUUUGGACACGG
>Trchd_eryth_0148 Trichodesmium erythraeum pre-tmRNA AABK04000010:63405-63802; NZ_AABK04000010:63405-63802
GGGGCAUUAACGGUUUCGACAGGGUGGUGAAAUCUGCUUUGUGAUGCAGGCCGAGAGUGAGUCUUCUCUCGAAAAUCCUG
GACUCAAAAAAUAAUAAGUGCAAACAACAUUGUACCUUUUGCUCGUAAGCAAGUAGCUGCUCUAGCUUAAUUGCAAAAAC
ACCUCUUAUAGGUUCGAGCGUCUGUGGUUUGACUCCGUUAAUAAUUGCAGACUUAACCCCAACGGAUGCUCUAGCAAUUU
UUCUCUGGUUACCUGCUAGUUAAGAUUUAACCAGAGCAUCCCACUAUCCGGGAUAAUGGAUAGUCCCAGCUCUGAGGGUU
AAGAAGGGCUAAACCUGUGAAUGAGUGAAGGGUGAAUAGCCAUUUUGGACAUGGGUUCGACUCCCAUAUGCUCCAuac
>Leptl_borya_0147 Leptolyngbya boryana tmRNA (ends unsequenced) AY082652:1-347
AGGUUGGCGAACGUUCCAUCGAGAUGCAGGUCGAGAGGGAGUCCACUCUCGUAAAUCUAGGCUCAAAAAAAUAGAUGCAA
ACAACAUCGUACCUUUCGCUCGUAAAACUGCACCUGUUGCAGCAUAAAACACCUCUAAUUCAGGUUCGAGCGCUUACCGU
CUGACACCGUUAAAGAUAGUAAGCACAACCCCAACGGUUGCUCUAGAAUUUCGCCUUUGGUCGGCAUUCUAGCUAAGACA
AUACCAAAGCAUCCUAUUGUCCGGGACAAAGGACAGUUCCCGCUUCGAGGAUUAGAGAAGCUAAACCUGUGAAUGAUUGA
UAGAGCUAAUACCCAGUUUGGACACGG
>Nostoc_7120_0143 Nostoc PCC7120 pre-tmRNA AF242564:6545-6929; BA000019:3247-2858; NC_003272:3247-2858
GGGUCCGUAACGGUUUCGACAGGUUGGCGAACGCUACUCUGUGAUUCAGGUCGAGAGUGAGUCUCCUCUCGCAAAUCAAG
GCUCAAAACAAAAGUAAAUGCGAAUAACAUCGUUAAAUUUGCUCGUAAGGACGCUCUAGUAGCUGCCUAAAUAGCCUCUU
UCAGGUUCGAGCGUCUUCGGUUUGACUCCGUUAAGGACUGAAGACCAACCCCCAACGGAUGCUCUAGCAAGUGUUCUCUG
GUUGGCUUGCUAGCUAAGAUUUAAUCAGAGCAUCCUACGUUCGGGAUAAUGAACGAUUCCCGCCUUGAGGGUCAGAAAGG
CUAAACCUGUGAAUGAGCGGGGGGUCAAUACCCAAUUUGGACAGCAGUUCGACUCUGCUCGGAUCCACua
>Nosto_punct_0144 Nostoc punctiforme pre-tmRNA AAAY02000004:61478-61089; NZ_AAAY02000004:61478-61089
GGGUCCGUCACGGUUUCGACAGGUUGGCGAACGCUGCUCUGUGAUUCAGGUCGAGAGUGAGUCUCCUCUCGGAAAUCAAA
GGCUCAAACAAAAAGUAAAUGCGAAUAACAUCGUUAACUUUGCUCGUAAGGAUGCUCUAGUAGCUGCCUAAACACCUCUU
AUAGGUUCGAGCGUCUUUAGUUUGACUCCGUUAAGGACUGAAGACCAAACCCCAACGGAUGCUCUAGUAAGCGUUCUCUG
GUUGGCUUGCUAGCUAAGAUUAAAUCAGAGAAUCCUACGUUCGGGAUAAUGAACGAUUCCCGCCUUGAGGGUCAGAAAGG
CUAAACCUGUGAAUGAGCGGGGGGUCAAUACCCAAUUUGGACAGCAGUUCGACUCUGCUCGGAUCCACua
>Anaba_varia_0145 Anabaena variabilis pre-tmRNA CP000117:3231376-3230987; NC_007413:3231376-3230987
GGGUCCGUAACGGUUUCGACAGGUUGGCGAACGCUACUCUGUGAUUCAGGUCGAGAGUGAGUCUCCUCUCGCAAAUCAAG
GCUCAAAACAAAAGUAAAUGCGAAUAACAUCGUAAAAUUUGCUCGUAAGGACGCUCUAGUAGCUGCCUAAUUAGCCUCUU
ACAGGUUCGAGCGUCUUCGGUUUGACUCCGUUAAGGACUGAAGACCAACCCCCAACGGAUGCUCUAGCAAGUGUUCUCUG
GUUGGCUUGCUAGCUAAGAUUUAAUCAGAGCAUCCUACGUUCGGGAUAAUGAACGAUUCCCGCCUUGAGGGUCAGAAAGG
CUAAACCUGUGAAUGAGCGGGGGGUCAAUACCCAAUUUGGACAGCAGUUCGACUCUGCUCGGAUCCACua
>Fremy_diplo_0146 Fremyella diplosiphon tmRNA (ends unsequenced) AY082653:1-345
AGGUUGGCGAACGCUGCUCUGUGAUUCAGGUCGAGAGUGAGUCUCCUCUCGCAAAUCCAAGGCUCAAAACAAAAGUAAAU
GCGAACAAUAUCGUAAAAUUUGCUCGUAAGGAAGCCCUAGUUGCUGCCUAAUAGCCUCUUAUAGGUCCGAGCGUCUUUAG
UCCGACUCCGUUAAGGGCUAGAGACCAACCCCAACGGAUGCUCUAGCAAGUAUUCUCUGGUUGACUUGCUAGCUAAGACU
UAAUCAGAGCAUCCUACGUUCGGGAUAAUGAACGAUUCCCGCCUUGAGGGUCAGAUAGGCUAAACCUGUGAAUGAGCGGA
GGGUCAAUACCCAAUUUGGACAGCA
>Mesos_virid_0166 Mesostigma viride plastid pre-tmRNA AF166114:20729-21087; DN264369:1-300X; DN264269:804-849; DN254690:134-491X; NC_002186:20729-21087
GGGGUUGAAAUGGUUUCGACGUUUUAGUAUAUAUCUUCUUACAAGCAAGUCGAGAAUGAACCAAUCUCGUAAACUUGAGU
UCAAUUGCAAAUAAAUGCUAACAAUAUUUUACCUUUUAAUCGUAAGACAGCCGUAGCUGUUUAAAAGUUUUUUGAUAACU
UCGAGCAUUUUUGAUUUGUUAAAUACAAUUGUUAUAAAACAAAUUAAAUAAUAGUUUUUGUUUCUUUACAAAUAAUGUAG
AAAUAAUUUUUUUUAGCUUUUCAAGCUCCAGCUUUGUGGAUUAGCAAAGCUAAACUUGUGAAUACAAAGAAGAGAUCAAA
CUAAAGCGGACGCGGGUUCAAAACCCGCCAGCUCCAuaa
>Nephr_oliva_0167 Nephroselmis olivacea plastid tmRNA AF137379:97379-97053; NC_000927:97379-97053; AF137379:195547-195873; NC_000927:195547-195873
GGGGUUGUCAUGGAAUCGACGUCUCUUCUAAGAACGAAAGGUUAAAGCAGGUCGAGGUCGAAGAUGGACUCGUACUCUCC
ACUUCAUUGCUUGAUUGCAUGCUAAUCAGAUUCUUCCUUUCUCUCGCCGGGUAGCCGUUGCUGCUUAAGCGAGUUUCUAG
UGCCACUUUGUCACUAGUUUGUAUUAUGAGUUUCACACUCACUUCAAUGACGGUGAUAGAUACUACAUAUCACUCCUGCU
UAGAGGGUCAUCUAAGCUAAACCAUGUGAAUAUAACCUUUCGGGCCUCGAGAGACGGAAGUGAGUUCAAUUCUCACCAAC
UCCACCA
>Cyanp_parad_0168 Cyanophora paradoxa plastid pre-tmRNA U30821:84810-84517; NC_001675:84810-84517
GGGGCUGUUUAGGUUUCGACGUUUUUUUCUAAUUAUGUUUGUUAAGCAAGUCGAGGAUUUGUUCUAUCUCGAAAAUCAAG
AACUCUCAAAAUUUAAACGCAACUAAUAUUGUACGUUUUAACCGUAAAGCAGCUUUCGCUGUUUAAUAAUUACUUUUAAU
UUAAAAACCUAAUUUUUUUAGGAAUUUAUUUAUUUAUUGUUUAUCCUGCUUAAUGAAUUAAAAAAAGCUAUACUUGUGAA
UAAACGCAUAAUUUAAAAAAACGGACGUGGGUUCAAAUCCCACCAGCUCCACuc
>Ampho_coffa_0169 Amphora coffaeformis plastid tmRNA (ends unsequenced) AF550350:1-287
AUCUAAAAUUAAUUACUAUAUGAAUCAGGUCGAAGCUUGUACUCUUCGAAAAAAUCUACAAACUAUAAUAUAAAGGCUAC
UAUUAUAACAUGGUUUAUUUCAAAAAUUAUAAAUCGUAAUGCUUGUUCAUUACAAUUUGUAGUUUAAUUAACUUUAUUUC
UACACAAACAAAUUAUUCACUAGAUCUAUCAUUUUUCAGAAUUUUAGUUUAGAAUAACAAUACUUUUUUUUGUUCUUUAA
AACUAUGCCUGUGAACGAGUAUAUUAAAUCAUUUUAGAUGGACAUGG
>Thala_weiss_0170 Thalassiosira weissflogii plastid pre-tmRNA AF049491:488-835
GGGGCUGAUUUGGUUUCGACAUUUAAAACUUCUUUCUAUGUGUCAGGUCAAAGUUUGUAUUCUUUGUAAAAAAAUACUAA
AAUACUAAUAAAUGCUAAUAAUAUAAUACCGUUUAUUUUUAAAGCAGUAAAAACAAAAAAAGAAGCAAUGGCUUUAAAUU
UUGCUGUAUAGUUCAUUAACUUAGGUUAUUAAAUAUUUUUUCAUUAUAACUGGACUUUUCUCUAGUUUAUAGUUUAGAAU
AAAUUUAAAUUUUGCAAAACUCGUUCGAAAAUUUUCGGGCUAAACCUGUAAACGCAAAUACUAAGAAAUUUUAGAUGGAC
AUGGGUUCAAUUCCCAUCAGUUCCAauc
>Thala_pseud_0171 Thalassiosira pseudonana plastid pre-tmRNA AAFD01001440:59630-59973
GGGGCUGAUUUGGUUUCGACAUUUAAACACUAUUUCUAUAUGUCAGGUCAAAGUUUGUAUUCUUUGUAAAAAAUACUAAA
UUAUUAAUAAAUGCUAACAAUAUAAUGCCUUUUAUGUUUAACGUAGUAAAAACAAACCGUUCAUUAACUACUUUAAAUUU
CGCUGUUUAAUCACUUAACUUAGGUUAUUAAAUAUUUUUUCAUUAUUGCUAGACUUUUAUCUAGUAUAUAGUUUAGAAUA
AGUUUAAAUUUUAAAAAUUGUUCAAGUUUUUUGAACUAAACCUGUAAAUGAGUAUAUUAAUAAACUUUAGAUGGACAUGG
GUUCAAUUCCCAUCAGCUCCAaua
>Odont_sinen_0172 Odontella sinensis plastid pre-tmRNA Z67753:95843-96213; NC_001713:95843-96213
GGGGCUGACUUGGUUUCGACAUUUAAAAAUUGUUACAGUAUGAUGCAGGUCGAAGUUUCUAAUCUUCGUAAAAAAAGAGA
AAUUUAUAAUAAAUGCUAAUAAUUUAAUUUCUUCUGUGUUUAAAAGUUUAUCAACUAAGCAAAAUAGUUUAAAUUUAAGU
UUUGCUGUUUAAGUUUUAUGCACAUUUAAUGAUCUAGUAAAUAACUUUGUUCGCUAUAAUUUAUAUUUAUAACUAGACUU
UUGUCUUUUUUAUAGUUUAGAAUAACUUUAUCAUUUCAAACCUCGUUCCAUCUAGUUGAACUAAACCUGUGAACGAAUAC
UAUAAUAAAAUUUUUAGAUGGACGUGGGUUCGACUCCCAUCAGCUCCAuau
>Skele_costa_0173 Skeletonema costatum plastid tmRNA (ends unsequenced) AF550357:1-302
AUUUAAAAGUUAUUUAUAUAAGCCAGGUCAAAGUUUGUACUCUUUGUAAAAAAGACUAAAUUAUUAUAAUAAAUGCUAAC
AACAUAAUGUCUUUUAUUUUUAAAACAGUAACUCCAAAAAAUCAUUUAAAUGUUUUAAGUUUCGCUGUUUAAUUAUUUAA
UGUAGUUUAUUAAAUAUUUUUUCAUUAUAGCUAGACUUUUUUCUAGUAUAUAGUUUAGAAUAAAUUUAAAUUUUAAAGAU
UGUUCAAAUCAUUUGAACUAAGCCUGUAAACGCGUGUAUAAAUAAGCUUUAGAUGGACAUGG
>Frgla_pinna_0174 Fragilaria pinnata plastid tmRNA (ends unsequenced) AF550351:1-291
AUUUGAAAAUAACUAAAGUAUGAUGCAGGUCGAAGCUUGUAUUCUUCGUAAAAAUCUACAAAUUUAACAUAACUGCUAAU
AAUAUAAUUCCUUUUCACUUUAAAACAGUAAAUUUCAAUAACUCAAAUUUAUUACAAUUUGCUGCUUAAAUAAAAACGAA
CUUUUAGUAACAAAAUUGGUACUCUAUUCUGAGACGUUUCGUUUUAGAUAGUUUUGAAUAAUUUUAACAGUUGUUCACUU
AUCGAACUAUGCCUGUGAACGAAUACUUUAAUUAAAUUUAGAUGGACGUGG
>Bolidom_OLI_0175 Bolidomonas OLI46SE plastid tmRNA (ends unsequenced) AF169626:1-304
AUUAUAAAAAUUUUAAAUUAUGAUGCAAGUCGAAAAAUAUUAUUUCGUUAAAAAAUAUACCUUUAAAAUAAAUGCAAAUA
ACAUUUUAGCUUUUAACCGUAAAUCUUUAAGUUUCGCUUAAAAUUAUUUAUGGAAAUUUUUAAGAGUGUCCAUCUCUUAA
AAAUUUGAAAACUUUAUGGACAUUAUAAAACUAGACUUUUCUAGAUCUUUUAAGUUAAAUUAUUACUUAAUUCCUUUUAA
UUUGUUCAUUUUAAAUGAACUAAACUUGUGAACGAUUAAUUUAUCACUUUUAUAAUGGACGUGG
>Pylai_litto_0176 Pylaiella littoralis plastid tmRNA (ends unsequenced) AF169625:1-354
AUUUAAAAUUAUAAUAGUUACUAAGCAGAUUUAAGUCUUAGAAUAUAAAAUAAUUGCAAACAACAUUAUGAGCUUUAAUA
AAAACCAAGUUUUUGCAUAAAAUACUUGAGUUUUAAUAUCAAUCAAUUUUAUAAUUGUUGAUUGAAAUAGGUAGAAGAUU
AUUUUUUCUCUUAAAUUUUAGUUUUGGUAAUUUUACUAUCAGUAAAAUAUAAUAUUUAUAAAAUAAAUAUAAAUCGAUCC
AUAUUUUUGCUACCAAUCUGUUUUUAAUAGUUUUAAGCUUAUUUUAGCUAAGCAGAUUGAUAACUAAAUCUGUGAUUUUA
GUACUUAGUUUGAUAAUUUUUUAAAUGGACGUGG
>Pavlo_luthe_0177 Pavlova lutheri plastid tmRNA (3-prime end unsequenced) X65961:3460-3678
GGGGCUGUUUAGGUUUCGAUCCUAAAAAAAACUAAUAAGUGUGAUGCAAGUAGAGGAAACCCUCUUAAAAAAAAAGCAAA
CAAUAAAUGCAAACAAUAUUUUAUCUUUUAAUCGAGUAGCUGUAGCCCCGUAUAGUUAUAUAGCAUUAACUCCUUAUGGU
CAAAAAAUCUAGAAAGUUUGAUCGUAAAGCAAACCUUAGCUAGAAGCACACAAGAAUAA
>Prymn_parvu_0178 Prymnesium parvum plastid tmRNA (ends unsequenced) AF550354:1-245
AUUUAGGUCUGGAAGUUUUUAAAAUAUUCCUAAUUUAAGGAUAAUCUCAAAUAGUUGCAAAUAAUAUUUUAUCUUUUAAU
ACUAAACUAGCACUAGCUUAAGUUUUUAGUAUAAUCAGUUAUGGUAUUUUACUCUUUUAACCUUUCUGAUAAACAUAAAA
AAGAGGCGCAUUUUUGCAAAGAAAUUUAGUUAAAUGUUUUCUAUGGUUGUAAAUAAAGAACUUUUUUAGGGCUAAAUGGA
CGUGG
>Emiln_huxle_0614 Emiliania huxleyi plastid pre-tmRNA AY741371:70654-70364; NC_007288:70654-70364
GGGGCUGUUUUGGAAUCGACAUUAAAAUUUUUAGGACAUUUUGUUAUAACUUAUAAAGUUAUUUACUUUAGAACAAAUGC
AAACAACAUCUUAAACUUUAAUUCAAAGUUAGCUAUCGCUUAAAAUUUUUGAAUUACCAAUGAAAUUGGUCACUUAUUUU
AUUGGUUCGAUUUAUAGUGAAUGCUGUAUUACGUAUACAAAGAAAUUUUCAUCUCGAAUAAAACGCCGUAGUUGACAAAG
GUUCAAUUUAAAAUUGAAUGGACGUGGGUUCAAAUCCCACCAGCUCCAaaa
>Cydum_calda_0179 Cyanidium caldarium plastid pre-tmRNA AF022186:109751-109498; NC_001840:109751-109498
GGGGCUGAAAGGAUAUUCGACAUAUUAAUUUCGUGCGCUAUGAUGCAAGCCGAGAAUGCUUAUCUCGUAAAAAAGCAGAC
AAAGAAAUAAAUGCAAACAAUAUUAUUGAAAUUAGCAAUAUUAGAAAACCAGCUCUAGUAGUCUAGCCUGAUUCAGUUAU
UUCUAAAUUAUUUAUGUUAUGUUAUUUAAGCUUGUAGUAACUAUCUAGUGUACAAUUUCUAUGGACGUGGGUUCAAUUCC
CACCAGCUCCACaa
>Cysch_merol_0180 Cyanidioschyzon merolae plastid pre-tmRNA AB002583:13544-13309; AG275483:582-804X; AG275208:583-655; AG275152:583-660; AG274836:68-303; AG274240:68-303; AG273792:346-581; AG273358:437-672; AG271391:81-316; AG271329:596-741; AG270866:83-318X; AG270246:414-649; NC_004799:13544-13309; NC_004799:13544-13309; AY286123:51835-52070
GGGGCUGUAAGGUGUUCGACAUAAGUUGUUGUUAUUCAAUAAUUGCAAAUCAAAUUCUACCUUUUUCUAUUCCCGUUAAA
CAUCUAGCUGUUUAAAUUUAAAGACAAUUUAAAGACAAUCUAAAGACUCAAGAGACAAAAAUUUUAGGUAUUUAGGUAAC
UUUUAGGUAACUAAGUAAGGAACUAAGUAACGAAAACAACUUAUGGACGUGGGUUCAAUUCCCACCAGCUCCAaug
>Rhoso_marin_0181 Rhodosorus marinus plastid tmRNA (ends unsequenced) AF550356:1-260
AAUACAAGUCGAGAAUGAGAAUUUCUCGUUAAAAUUUCUCAAAAAAAAUAAUAAAUGCAAAUAACAUUUUAAAAUUCUUU
ACCAAGUCUCCGGUAGUAGCAUUCGCUUAAAACCUUUGGUUUCACAUUAGUCUAAUCUUAAUUUAAUAUGAAAAUCUUUA
AGAUGCAGCUAAAAAAUAAAUUUAGCUAAGAACCCUACGCAAUCAAAUGUAUGUAUAAAACUUGGAAUACUAUUGACUAA
UACAAUCUAAUUGGACGAGG
>Porpa_purpu_0182 Porphyra purpurea plastid pre-tmRNA U38804:23536-23858; NC_000925:23536-23858
GGGGCUGCAAGGUUUCUACAUUGUGAAAAAACAAAUAUAUGAAAGUAAAACGAGCUCAUUAUUAGAGCUUUUAGUUAAAU
AAAUGCAGAAAAUAAUAUUAUUGCUUUUUCUCGAAAAUUAGCUGUUGCAUAAAUAGUCUCAAUUUUUGUAAUUCGAAGUG
AUAGACUCUUAUACACUACGAAUAUUCUGUUAGAGUUGCUCUUAAUAAAAGAAAAGUAAAAAAAUACAAAUUCUUAUGUU
UUUUACCUGAAUUGAUUCAAUUUAAGGUUAGUAUUUUUUGAUUUUUACAAUGGACGUGGGUUCAAGUCCCACCAGCUCCA
uca
>Graci_tenui_0183 Gracilaria tenuistipitata plastid pre-tmRNA AY673996:154581-154186; NC_006137:154581-154186
GGGACUGCAAGGUUUCUACAUAUAGUAUACAAUAUACAUUGUCAUUAAUAUAACUUUAUUACUAUUAGUAAAUGCUAAAA
AUAAUAUAUUAACUUUAUCUAGAAGAUUAAUUUAUGCUUAAACUUUUUGAAAUAAAAGAUUAAGCAGUUACAGAUUGUUA
CUAGAACUCAAAUAAUAUAAGCCAUAUAGUUAUUUGAUAUAUUGAAUUUGGUUGCUCUUAAAUUAGUCUUAAUCAAAGAA
UUAAUUUUAAGAUAAGUAAGAAAUCAUUACAACAUCAAAUCGUAUUUUUUAGAUUACAUCUAUAAUAUAUUACUUAUAAU
AUAUUAUUUCUAAUGUAAUUAGACGAUAUAUAGUAUAUUAUUAUGGACGUGGGUUCAAUUCCCACCAGUUCCAuac
>Mastc_papil_0184 Mastocarpus papillata plastid tmRNA (ends unsequenced) AF550352:1-291
AUAUAGUAUUGUAUGUAUAAGUAGUAAAGGAUGAAGGUAAGCUAAACUUCAUUAAUCCUAGCUUGACUACAAAUGCAAAA
CAUCAAAUUGUUCCUUUUUCUAAAAGAAUUAUAGUAGUAUAAUAUUUUUUAGAAUAUUAGAUUAUAAUUUCUCUAAAUAA
UCUGGUAUUUUUAUUUGAGAUGCUCUUAAUUAGAUAACUUAUUUUUAAGCAAAGUUACAAUUUUUAUAUAUUUUUCCUUU
GUACUUGACUUGUAUAAGUAUACUUUACAUACAGUUUUGAUAUGGACGUGG
>Prion_lance_0185 Prionitis lanceolata plastid tmRNA (ends unsequenced) AF550353:1-318
AUAUAAUUCCGUCUAUAUAAGGUUCAGAGAAUGAAGGUGAGCUAAACUUCAAUAAUCCUAGCUUAAAAACAAUUGCAAAA
CAUCAAAUUUUACCAUUAUCUAGGAAAAUUGCUUUAGCUUAAUAUAAGUAAAAGAAAAUAUGAUUUUUUCUAGGUUAUCA
AGAUUGAGAUUCUAGUAUAUAUCUUGAUUGGUUAUUACACUAGAUGCUCUUAAAUUUAUGGUUUAAGCUAAGUUUCAAUC
UAUUUAUUGUUUUUUCUCUUGACUUAGUCAAUAAUUUGAUAAUUGUCAACUUAUUAAGCUGAAUUACUAUGGACGUGG
>Guill_theta_0186 Guillardia theta plastid pre-tmRNA AF041468:50514-50185; NC_000926:50514-50185
GGGGCUGAUUUGGAUUCGACAUAUAAAUUUGCGUGUUUCAUUAUGAAGCAAGUCAAGUUUAAUGAUCUUGUAAAAAACAU
UAAAGUACAAAUAAAUGCAAGCAAUAUAGUUUCAUUUAGUUCAAAACGUUUAGUCUCUUUUGCAUAAGCAAAAUGUGUUA
AUAACUUUCUUAGUAGAAAUUGGAGAAGUUUACUAAGAUUUAUAUUUACUCCAUAAUUAUUUUAAAGAUGGUAAAAAGGU
GAUUCAUCAUUUGUAUGUUUCUAAACUUUGUGAAAGAAUAGUGGGCUCCAUUUAUAAUGAACGUGGGUUCAAAUCCCACC
AGCUCCAuag
>Rhomo_salin_0187 Rhodomonas salina plastid tmRNA (ends unsequenced) AF550355:1-308
AUUUUGGAAAGAAUAGUAUUAUGAUGCAAGUCAAGAUUGAGCUCAUCUUGUUAAUAAAGCUCAUCAUAAAUAAAUGCAAA
UAAUAUUGUACCUUUUUCUCGUAAGGUCGCUUUAGUUUAAGAUUGUUUUCCUCAUUGGAGACUUGAUUAAUCUAUAAAAA
UAAGUUAAAGCUAAAACAUUGGAAGAAAUUUAGCUUAUAAAUAAAAUUCCGUUCUCAUAACUUUAGUGGGUAAAAAAAUA
CUUUCUUUGAGUAUUGAACAAAGAUAAACUUGUGAAUGAGUGUGCUACGUAAGCUGAAAUGGACGUGG
>Bacro_frag1_0122 Bacteroides fragilis pre-tmRNA, version 1 {NCTC 9434, YCH46} CR626927:1289246-1289643; NC_003228:1289246-1289643; AP006841:1350686-1351083; NC_006347:1350686-1351083
GGGGUUGACUGGUUUUGACAGCGGGCAGAAAUGGUGGGUAAGCAUGCAGUGCGUCGGUGAUUUGCACUUUAAUCUCAGUU
AUCAAAAUUUUAUCUGGCGAAACUAAUUACGCUCUUGCUGCUUAAUCGAAUCAUAGUAGAUUAGCUUAAUCCAGGCACCA
GGUGCCAGGACGAGACAUCACUCGGAAGCUGUUGCUCCGAAGCAUUCCGGUUCAGUGGUGCAGUUACAUCGGGGAUAGUC
AGAAGUGGCCUUGCGCUUCUGAUGAAACUUUAAAGGAUAAGGCAGGAAUUGAUGGCUUUGGUUCUGCUCCUGCACGAAAA
ACUUAGGCAAAGAUAAGCAUGUAGAAAGCUUAUGAUUUCCUCGUUUGGACGAGGGUUCGAAUCCCUCCAGCUCCACuu
>Bacro_frag2_0123 Bacteroides fragilis pre-tmRNA, version 2 {638R}
GGGGUUGACUGGUUUUGACAGCGGGCAGAAAUGGUGGGUAAGCAUGCAGUGCGUCGGUGAUUUGCACUUUAAUCUCAGUU
AUCAAAAUUUUAUCUGGCGAAACUAAUUACGCUCUUGCUGCUUAAUCGAAUCAUAGUAGAUUAGCUUAAUCCAGGCACCA
GGUGCCAGGACGAGACAUCACUCGGAAGCUGUUGCUCCGAAGCAUUCCGGUUUAGUGGUGCAGUUACAUCGGGGAUAGUC
AGAAGUGGCCUUGCGCUUCUGAUGAAACUUUAAAGGAUAAGGCAGGAAUUGAUGGCUUUGGUUCUGCUCCUGCACGAAAA
ACUUAGGCAAAGAUAAGCAUGUAGAAAGCUUAUGAUUUCCUCGUUUGGACGAGGGUUCGAAUCCCUCCAGCUCCACuu
>Bacro_theta_0125 Bacteroides thetaiotaomicron pre-tmRNA AE015928:5798212-5798608; NC_004663:5798212-5798608
GGGGUUGACUGGAUUUGACAGCGGGCAGAAAUGGUAGGUAAGCAUGCAGUGGGUCGGUAAUUUCCACUUAAAUCUCAGUU
AUCAAAACUUUAUCUGGCGAAACUAAUUACGCUCUUGCUGCUUAAUCGAAUCACAGUAGAUUAGCUUAAUCCAGGCACUA
GGUGCCAGGACGAGACAUCACUCGGAAGCUGUUGCUCCGAAGCAUUCCGGUUCAGUGGUGCAGUAACAUCGGGGAUAGUC
AGAAGCGGCCUCGCGUUUUUGAUGAAACUUUAGAGGAUAAGGCAGGAAUUGAUGGCUUUGGUUCUGCUCCUGCACGAAAA
UUUAGGCAAAGAUAAGCAUGUAGAAAGCUUAUGAUUUCCUCGUUUGGACGAGGGUUCGAUUCCCUCCAGCUCCACCu
>Uncul_anop1_0124 Uncultured anopheles1 pre-tmRNA (5-prime end unsequenced) AAAB01061746:1-154; BH400891:661-589X
GAAGCUUCGGCUUGUACACGAAAAUCUCAGAAGAUAAGGUAAAAGUUGUGCGUUUUCUCACUGCUUUUUCCCGACAAUUA
AUAGAAAACUAAGCAUGUAGAAGGCUUAUGUAUUGCCUGUUUGGACGAGGGUUCGAAUCCCUCCAGCUCCACuu
>Tanne_forsy_0126 Tannerella forsythensis pre-tmRNA
GGGGCUGACCGGUUUUGACAGCGGGCAGAAGUGGUUUGUAAGCAUGCAGUGCGUCGUUGGCCGGCACUUUAAUCUCGGUU
GAUCCAAUUUUAACUGGCGAAAAUAACUACGCUCUCGCUGCUUAAUCGAAGCACAGUAGAUUGAAGCUUAAUCCUUACAC
AAGGUGUUUGGACGAGACAUCACCCGGAAGCCGUGGCUUCGAGGCAAUCCGAACCGGUGGUGCAGAAAUGUCGGAGAUAG
CUUGACGGAUGUCCCGUACGGCAAGUGAAAAUUCAGGGAAUAAGGUUGCGGUGGGUGGCUUCGGUCUUGCCGCAGCACGA
AAAUGAAGGCGAAGAUAAGCAUGUAGAAAGCAAAUUAGUUCCUCGUUUGGACGAGAGUUCGAAUCUCUCCAGCUCCACau
>Porpm_gingi_0127 Porphyromonas gingivalis tmRNA AE015924:2226462-2226056; NC_002950:2226462-2226056; AR227166:6675-6269
GGGGCUGACCGGCUUUGACAGCGUGAUGAAGCGGUAUGUAAGCAUGUAGUGCGUGGGUGGCUUGCACUAUAAUCUCAGAC
AUCAAAAGUUUAAUUGGCGAAAAUAACUACGCUCUCGCUGCGUAAUCGAAGAAUAGUAGAUUAGACGCUUCAUCGCCGCC
AAAGUGGCAGCGACGAGACAUCGCCCGAGCAGCUUUUUCCCGAAGUAGCUCGAUGGUGCGGUGCUGACAAAUCGGGAACC
GCUACAGGAUGCUUCCUGCCUGUGGUCAGAUCGAACGGAAGAUAAGGAUCGUGCAUUGGGUCGUUUCAGCCUCCGCUCGC
UCACGAAAAUUCCAACUGAAACUAAACAUGUAGAAAGCAUAUUGAUUCCAUGUUUGGACGAGGGUUCAAUUCCCUCCAGC
UCCACCA
>Prevo_inter_0128 Prevotella intermedia pre-tmRNA
GGGCUUGUAUGGAUUUGACGGCAAGACGAAAUGGUAUGUAAGCAUGCGGAGCAUUGGUAGCUGGCUCCUAAAUAUCGGUU
AUCAAACAAUUAAUUGGCGAAAACAAUUACGCUCUCGCUGCCUAAUCGAAGUACAGUAGAUUACUGGCUUUAUUCGACUA
UUAGAUAGUUGAACGAGACACUGCUCCAAAGAUGUUGUUCCGAAUCGGAGGGUAAAGCGGUGCAGGUUAAAUCGGAAAUA
GUUUGGGUAUGCCUCGCUGCCCAAAUGAAAUUUAGAGGAUAAGGCAUUGGUUGGUGGUUCAGGUCUUGCCAAUGCUCGAA
AACCAAAGGCUGAAAUAAGCAUGUAGAAAGCGUAUGGUUUCCUUGUGCGGACCGGAGUUCGACUCUCCGCAGGUCCACua
>Prevo_rumin_0129 Prevotella ruminicola pre-tmRNA
GGGGUUGACUGGAUUUGACGGCGAGAUGAAAUGGUACGUAAGCACGCGGAGGCUUCUUUGGUUCCCUCCAUAAUCUGAGU
CAAGGAAAAUUUAAUUGGCAACAAUGAGUAUGCUCUCGCUGCCUAAUCGAAGUAUAGUAGAUUACUGGCUUUAUUCCUUU
ACAAGGUAGAGGAACGAGACGUCGCUCCGAGGAUGUUGUUCCGAAUCCAAAGAUCAAGCGGCGCAGGUUAAAUCGGAAAU
AGUCGUUGCAGACUCCGAUGUAGCGGUGAAAUUUUAGGAGAUAAGGUUGCGGUUGGUGGCUUGGGUCUUGCCGCAGCUCG
AAAAUGAAGGCCAAGAUAAGCGUGUAGAAAGCGUAUGGUUUCCUUGUGCGGACGAGGGUUCGACUCCCUCCAGCUCCACu
a
>Cytph_hutch_0121 Cytophaga hutchinsonii tmRNA AABD03000004:329770-329369; NZ_AABD03000004:329770-329369
GGGGUCGACAGGAAUUGACAGGUUGAGUGAUUACGUGUGUAAGCAUGCAGGCUCAUGGGAUGAGAGCCUUAAAAGAUAGU
UCCGAACAAUAAUUGGCGAAGAAUCUUACGCCAUGGCUGCUUAAUUACGAACUAAGUUUGUAAUAAUGAGCGUUGAGUGG
AGCUGUUAAGAACAGCACCCGGCCACAUCUCACACGGCUUCUGUUCUGCGGGCUGUGAACUGAGAUGUCGAACAGCAGGA
CUAGGGGAGUACAAGUUGCGGGUGCUUCGCGAAAUUAAGUAACUAAGGUUAUAGUUGGGUGCCGGUGACCUGCUACAGCU
CGAAAAUGAACAUCCGGCUAAGCAUGUAGAAGAUUCGAUAGUGGCCUUCUCUGGACGAGAGUUCGAAUCUCUCCGACUCC
ACCA
>Uncul_farm6_0688 Uncultured farm6 tmRNA (3-prime end unsequenced) AAFX01065096:812-1078
GGGGCCGACCGGUUUUGACAGGAUGUGUAAUGAUGUAUGUAAGCAUGCAGGCUCAUGGGAUGAGAGCCCUUGAAGAUAGU
UCCGAAUCAUACUUGGCGAGUCUAACUACGCCAUGGCUGCUUUAUUUAGCGUAACGCUAGAUUAGCCUCGUCCCGAUAAG
AUCGGGAGAGCCAUCGUCGCUCAGUUGCUCUGAUCUGCCGGCCGCUGGUCAAGCCGAUGUCCUAAUGCCAAAACUGCUCU
CGCACGAUGCUAUUAAAGUGCGGCUAA
>Salbr_ruber_0120 Salinibacter ruber pre-tmRNA CP000159:1402196-1401828; NC_007677:1402196-1401828
GGGGAUGACACGGCUUCGACGUGUAGUAAGCGUGCAGCAGACUGACCUGCCGAGCAGCCUGAUUCGCUUCGUAAAACCUG
UCAGGAACUGUAACUGCGGACGAUUAUUCGUACGCGAUGGCGGCGUAACAGCCCCCAUCUGUCUCGCGUCGCUCCUGGCC
CUUGGGGAGCGUGAGACAUCGACAAAAAGGGUGUAGCCGCCGCGUUCUCCGACUGCGGAUGCGCCGGUGAAAUCUAAUCA
GUCUCAGCGCCGCCCUGGCCUUGUGAAUGGGCAGACGGGCGACGUGAACCGCCAAUGCAUUCACUAUGCAGGUAGAGGUU
UGCCUGUGCGGCUACACGGACCCGGGUUCGACUCCCGGCAUCUCCACaa
>Chlbm_tepid_0130 Chlorobium tepidum tmRNA AE006470:660570-660973; NC_002932:660570-660973
GGGGAUGACAGGCUAUCGACAGGAUAGGUGUGAGAUGUCGUUGCACUCCGAGUUUCAGCAUGGACGGACUCGUUAAACAA
GUCUAUGUACCAAUAGAUGCAGACGAUUAUUCGUAUGCAAUGGCUGCCUGAUUAGCACAAGUUAAUUCAGAAGCCAUCGU
CCUGCGGUGAAUGCGCUUACUCUGAAGCCGCCGGAUGGCAUAACCCGCGCUUGAGCCUACGGGUUCGCGCAAGUAAGCUC
CGUACAUUCAUGCCCGAGGGGGUGUGCGGGUAACCAAUCGGGAUAAGGGGACGAACGCUGCUGGCGGUGUAAUCGGACCA
CGAAAAACCAACCACCAGAGAUGAGUGUGGUAACUGCAUCGAGCAGUGUCCUGGACGCGGGUUCAAGUCCCGCCAUCUCC
ACCA
>Chlbm_chlch_0131 Chlorobium chlorochromatii tmRNA CP000108:2092429-2092029; NC_007514:2092429-2092029
GGGGAUGACAGGCUUUCGACAGGGUAGGUGUAAGGUGGCGUUGCACUCCGAGUUUCAGCAUGGAUGGACUCGUUAAAGAA
GUCUAUGCAACCUUUAGAUGCAGACGAUUAUUCGUAUGCAAUGGCUGCCUAAUUAGCAAAAGUUAAUUAACCAGCCAUCG
CUCUUCAGCGGAGGCGCUUACUCCAAGGCUGUUAGAGUGGCAUAAUUCGCGCUUGAGCUCUGCUCGCGCAAGUAAGCUCC
GUUUUGUAUUGCCUGAUGUGCUUAGCGGGUAUUUAUUCGGGAUAGUAAGUUGAACGUUACAAGUGUCGUACCAACUUAUG
AAUCUUAAACACUUGAGAUGAGUGUGGUAGCGUUAUCAAGCAAUAUUCUGGACGCGGGUUCGAAUCCCGCCAUCUCCACC
A
>Recli_amer1_0199 Reclinomonas americana mitochondrion pre-tmRNA homolog, version 1 (precursor permuted) {ATCC 50394} AF007261:62859-63068; NC_001823:62859-63068
AAAAACACCUUGUUAAAUAAGUAAAUAAAAAAAAUAAAAUUUAAAUUAUUUUUUUAUAAGAAUGACUAUGGAACCGAGGG
CGGAUCUCGGCAUCUCCAuaaaaauguuugauaacauuuuuuGGGGAUGUUUUUAGUAUUCGACAUAGUGGAAUUUAUUU
GUGGAAUUUUUAAAUUUUAUUUUUUUAUCUACUUUUAAGAAGGAUUUUUU
>Recli_amer2_0200 Reclinomonas americana mitochondrion pre-tmRNA homolog, version 2 (precursor permuted) {ATCC 50283}
UAUAUUAACUAUGGACCCGAGGGCAGUUCUCGGCAUCUCCAuuuagauauuguuuuuaaGGGGAUGUUUUUAGGAUUCGA
CAUAGUAAUAUA
>Recli_amer3_0201 Reclinomonas americana mitochondrion pre-tmRNA homolog, version 3 (precursor permuted) {ATCC 50284}
UUUCGUAGUAACUAUGGACCCGAGGGCAGUUCUCGGCAUCUCCAucuaaaaaaauuuuuuuuaaGGGGAUGUUUUUAGAA
UUCGACAUAGUACAAUAUUAUGAGA
>Secul_ecuad_0202 Seculamonas ecuadoriensis mitochondrion pre-tmRNA homolog (precursor permuted)
UUUUUAGACAAUCUAACGAAUGGACCCAUGGGCAGUUCAUGGCAUUCCCAguaacaacaunnnnnnnnnnnnnauauugu
uuuaGGGAAUGAUAUAUACUAGAGAUCGACAUUCAAAAAUGUAACCAAACAUAAAAAA
>Histi_aroid_0203 Histiona aroides mitochondrion pre-tmRNA homolog (precursor permuted)
GCUACUAUGGACCCAUGGGUGGUUCAUGGCAUUCCCAggcccugcuauuuuaugGGGGGUGUUAAUAAAUUCGACAUAGU
AGC
>Jakob_liber_0204 Jakoba libera mitochondrion pre-tmRNA homolog
GGGGAUGAAUUAGUUUAGAUAUUUAAGUAAUCCAUGAAAAUUCAUCAGAAUUUUGUAAUAUUGCUUAGAUAAAACCAUGG
GCAGUACAUGGCAUCUCCAcca
>Caulb_cresc_0205 Caulobacter crescentus pre-tmRNA (precursor permuted) L25317:2810-2970; AE005883:5836-6162; NC_002696:2312526-2312852; AF255738:31-357
GUCCGGCUUCGGCCGAACUAUGGGGAUAAACGCGCACGUAAUAAGCGGACUGGACCCGGGUGCGAUUCCCGGCGGCUCCA
CCAaaucucucccgcguuaucacgggacugcauGGGGCCGAUCAGCAUCGACAGACGUGUAAAGGUGUCUGCUUUCUCUC
GGCUUGGCCCACCGUUUCGGGCCUUUAUCUAAAUGCGAACGAUAACUUCGCUGAAGAGUUCGCCGUCGCUGCGUAAUGCG
GUGCAGGUGAAUUCGCCUCUUAAGUCCUAGGGGUUCAGAUCCCUAGGCGGGGCCCGGAGGGAGCCUGCCAACAGAAUCCC
UCCACCU
>Hyphm_neptu_0206 Hyphomonas neptunium pre-tmRNA (precursor permuted)
GUCUUCGGACUAUGGCGAUAAACGCGCGUGUAAUAAGCGGCUCGGACCCGGGGGCGGUACCCGGCGGCUCCACCAaaagc
agaucagcaauggucuguuucugacGGGGCCGAAAUAGUGUCGACGGACGUGUAAAGACGAGGCUUUCGCUCGCUUGAGC
UGCGUUAGAAGCUCAAAAGCAAAUAGUUGCAAAUGACAACUUUGCUGAGGGCGAAUUGCUCGCCGCGUAAGCGGUGACGG
UUUUUCCGACCUAAGUCCUGGGGCUUCAGACCCCUAGGCGGGGCCCGGGGGCGCCUGGCAACAGAAGCCCCCACCU
>Parcc_denit_0207 Paracoccus denitrificans pre-tmRNA (precursor permuted) AAIT01000009:166159-166474; NZ_AAIT01000009:166159-166474
GUUCGGGUUCGCCCGGACUAUGGACAUAAACGCGCAGGUAAUAAGCGGAUCGGACCCGGGGGCGGUACCCGGCGGCUCCA
CCAgaaucccucguugggggcacauGGGGCCGAAACAGGAUCGACGAACGUCUAAAGCUGUUUGCUUUGUCUCGGUGAGC
UACCACCGUCAUCGGUGCAAAAUGUACAGUUGCCAACGACAACCGUGCUCCGGUGGCUCUGGCUGCGUAAGCAGCUCGGG
UAACCGAAACUUAAGCCCUUCCGCCUAGCAGCGUAAGGCGGGGCCCGCAGGAGCCUGGCAACAGAAUCCUGCACCU
>Rhobr_sphae_0208 Rhodobacter sphaeroides pre-tmRNA (precursor permuted) CP000143:741183-740867; NC_007493:741183-740867; AAMF01000004:262942-263258; NZ_AAMF01000004:262942-263258
GUCCGGGGCAACCCGGACUAUGGACAUAAACGCGCUCGUCAUAAGCGGAUCGGACCCGGGGGCGGUACCCGGCGGCUCCA
CCAacagucccucguugggggcggagGGGGCCGAAACAGGAUCGACGAACGUCUAAAGGGGUUGGCUUUGUCCCGGUGAG
GUACCACCGUUAUCGGUCCGAAAAGUACAGUUGCCAACGACAACCGUGCUCCGGUGGCUCUGGCUGCGUAAGCAGUUCGA
GUUAUCGAAACUUAAGCCCUUGCGCUUAGCCGCGUAAGGCGGGGUUCGCAGGUACCUGGCAACAGAAACCUGCACUU
>Uncul_bone2_0678 Uncultured bone2 pre-tmRNA (5-prime end unsequenced) (precursor permuted) AAGA01018614:887-737
CCGUUAUCGGCGUAAAAUGUACAAUGGCAAAUGACAAUCGUGCUCCAAUGGCGAUGGCCGCGUAAGCGACCGGAACUAUU
GAAACUUAAGUCGUAACGUUUAGGGACCUAAGGCGGGUUUCGCAGGUACCUGGCAACAGAAACCUGCACUU
>Jannas_CCS1_0600 Jannaschia sp. CCS1 pre-tmRNA (precursor permuted)
GUUCCUUCGGGAGCUAUGGACAUAAACGCGCUCGUAAUAAGCGGAUCGGACCCGGGGGCGGUACCCGGCGACUCCACCAa
cagucccucguugggggcggagGGGGUCGAAAUAGGAUCGACGAACGUCUAAAGGGGUUAGCUUUGUCCCGGUGAGUUAC
CACCGUUAUCGGUACACAUCGUACAGUUGCAAAUGACAACCGUGCUCCGGCAAUGGCUCUCGCAGCGUAAGCUGUCCUGA
GUCGCCGACUUUAAGCCCUAGCGCCUAGCCGCGUUAGGCGGGGUUCGCAGGCACCUGGCAACAGAAGCCUGCACUU
>Uncul_whal2_0679 Uncultured whale2 pre-tmRNA (precursor permuted) AAFZ01006233:307-621
GUCUCGCUUGCGGGACUAUGGUGAUAAACGCGCAUGUAAUAAACGGAUCGGACCCGGGGGCGGUACCCGGCGACUCCACC
AaaacaccugucuuugcaggggguauGGGGUCGAAAUAGGAUCGACGGACGUCUAAAGAUGUUUGCUUUUGCUCGGUGAG
UUACCACCGUUAUCGGUACAUUUAAGCUAGUUGCAAAUGACAACAGAGCUCCAGUUGCCCUGGCUGCGUAAGCAGUCCGG
AAUACUGAAAACUUAGUCCUAGGCUUUGCAGCCUAGGCGGGGUCCGCAGGCACCUGGCAACAGAAGCCUGCACUU
>Silic_pomer_0209 Silicibacter pomeroyi pre-tmRNA (precursor permuted) CP000031:2032611-2032300; NC_003911:2032611-2032300
GUUCCCUCGGGAACUAUGGACAUAAACGCGCUCGUAAUAAGCGGUUCGGACCCGGGGGCGGUACCCGGCGGCUCCACCAg
acacccucguugggggaucauGGGGCCGAAACAGGAUCGACGGACGUCUAAAGGGGUUAGCUUUGUCUCGGCGGGGUACC
ACCGUUAUCGGUCCGCAAAGCAUAAUUGCCAACGACAAUCGUGCUCCGGUUGCUCUGGCUGCGUAAGCAGUCCGAAACAC
CGAAACUUAAGCCCUUGCGCCUAGCAGCGUAAGGCGGGGUUCGCAGGUACCUGGCAACAGAAACCUGCAUUU
>Silic_TM104_0210 Silicibacter TM1040 pre-tmRNA (precursor permuted) AAFG02000001:283576-283238; NZ_AAFG02000001:283576-283238
GUUCCUUCGGGAACUAUGGACAUAAACGCGCUCGUAAUAAGCGGAUCGGACCCGGGGGCGGUACCCGGCGGCUCCACCAa
aucacuuccggcuuucuccuucguuuggggaguuuauucggaaccggGGGGCCGAAAUAGGAUCGACGGACGUCUAAAGG
GGUUAGCUUUGUCUCGGCUGUCUGCCACCGUUACCGGCGAAAACAGUACAAUUGCAAACGACAAUCGUGCUCCGGUUGCU
CUGGCUGCGUAAGCAGUUCGAGUCGAACCGACUUUAAGUCCUAGCGCCUAGCCGCGUUAGGCGGGGUUCGCAGGUACCUG
GCAACAGAAACCUGCACUC
>Agrbm_tume1_0213 Agrobacterium tumefaciens pre-tmRNA, version 1 (precursor permuted) {C58} AE009156:77-409; NC_003062:2007028-2007360; AE008121:4246-4578; NC_003304:2007141-2007473
GCCGGGGCAACCCGGCUAUGGCGAUAAACGGUCGGUGUAAUAAACCUAUUGGACCCGGGGGCGGUACCCGGCGCCUCCAC
CAaaaaccggcgggaucucaagaugaggccggcuuuugauGGGGGCGAAAUAGGAUCGACAAGGGCGUAAAGAUCGAACU
UUUGCUCGGCAUGAUACCGCCGUUAUCGGGUCACAAGUGUAGUUGCAAAUGACAACAACGCUAAGGAAUACGCUCUCGCU
GCCUAAUGGCGGUGCGGGAAUUCCGCUCUAAGUCCUUACGGUUAGCCCCGUAAGGCGGGGUUCGGAGGUACCUGGCAACA
GAAACCUCCACCU
>Agrbm_tume2_0214 Agrobacterium tumefaciens pre-tmRNA, version 2 (precursor permuted) {NTL4, C58} AY911526:1-333
GCCGGGGCAACCCGGCUAUGGCGAUAAACGGUCGGUGUAAUAAACCUAUUGGACCCGGGGGCGGUACCCGGCGCCUCCAC
CAaaaaccggcgggaucucaagaugaggccggcuuuugauGGGGGCGAAAUAGGAUCGACAAGGGCGUAAAGAUCGAACU
UUUGCUCGGCAUGAUACCGCCGUUAUCGGGUCACAAGUGUAGUUGCAAAUGACAACAACGCUAAGGAAUGCGCUCUCGCU
GCCUAAUGGCGGUGCGGGAAUUCCGCUCUAAGUCCUUACGGUUAGCCCCGUAAGGCGGGGUUCGGAGGUACCUGGCAACA
GAAACCUCCACCU
>Agrbm_vitis_0633 Agrobacterium vitis pre-tmRNA (precursor permuted)
GCCGGUGCUUGCAUCGGCUAUGGCAAUAAACGGUCGGUGAAAUAAACCUAUUGGACCCGGGGGCGGUACCCGGCGCCUCC
ACCAaaaaccggucggucuuugugaccggcuuuugauGGGGGCGAAAUAGGAUCGACAAGGGCGUAAAGAUCGAACUUUU
GCUCGGCAUGAUACCACCGUCAUCGGGUCACAAGUGUAGUUGCAAAUGACAACAACGCUCAGGGUUACGCUGUCGCUGCU
UAAUCGCGGUGCCAGAAACCCAAACUAAGUCCUUACGGGUAGCACCGUAAGGCGGGGUUCGGAGGUACCUGGCAACAGAA
ACCUCCACUU
>Rhizm_legum_0215 Rhizobium leguminosarum pre-tmRNA
GCCGGCUUUCGGGUCGGCUAUGGCGAUAAAUGAGCGGUGUAAUAAACCUAUUGGACCCGGGGGCGGUACCCGGCGCCUCC
ACCAaaaaccggcggucuuaaaggccggcuuuugauGGGGGCGAAACAGGAUCGACAAGGGUGUAAAGAUCGUCUUUUUG
CUCGGCAUUGUACCGCCGUUAUCGGGCUAAAAUUGUAGUUGCAAACGACAACUAUGCGGAAGCUCGUCUCGCUGCUUAAU
CGCGGUGUGACACUUCAAUCAAAGUCCUAGUGGUUCGCACCUCUAGGCGGGGUCCGAAGGCACCUGGCAACAGAAGCCUU
CACCU
>Uncul_whal6_0680 Uncultured whale6 pre-tmRNA (precursor permuted) AAFZ01025482:542-207
GCUGCGCAAGCAGCUAUGACAAUAAACGAGCGUUGCAAUAAACCAUUCGGACCCGGGGGCGGUACCCGGCGCCUCCACCA
ugauccggccuguugccggcaaacggccuuagcggccggaugaugauGGGGGCGAAACAGGAUCGACGAGGGUGUAAAGA
GCGACUUUUUGUUCGGUAUUGUACCACCGUUAUCGGGCUAAACUUGUAGUUGCAAAUGACAACUAUGCGGAAGCUCGUCU
CGCUGCUUAAUUGCGGUGUGACACUUCACAUUAAGCCCUAGAGGGUCGCACUUCUAGGCGGGGUUCGGAGGUACCUGGCA
ACAGAAACCUCCACUU
>Sinor_melil_0216 Sinorhizobium meliloti pre-tmRNA (precursor permuted) M73824:63-383; AL591789:203543-203863; NC_003047:2291143-2291463
GCCGUCUUCGGGCGGCUAUGGCAAUAAACGGGCGAUGCAAUAAACCCAUUGGACCCGGGGGCGGUACCCGGCGCCUCCAC
CAaaaaccggccugugcagaccggcuuuugauGGGGGCGAAAUAGGAUCGACAAGGGCGUAAAGAUCGACUUUUUGCUCG
GCAUUGUACCACCGUUAUCGGGCUAAACUUAUAGUUGCAAACGACAACUAUGCUGAAGCACGUCUCGCUGCCUAACGGCG
GUGCGACACUUCAAAUCAAGUCCUUCCGGGUAGCACCGUAAGGCGGGGUCCGAAGGCACCUGGCAACAGAAGCCUUCACC
U
>Mesrhz_loti_0217 Mesorhizobium loti pre-tmRNA (precursor permuted) BA000012:1222323-1222645; NC_002678:1222323-1222645
GUCGGCUUGACCGACUAUGGCGAUAAAUGGGCGAUGAAAUAAGCCGUUCGGACCCGGGGGCGGUACCCGGCGCCUCCACC
AaaagccgcuguugacgacagagcgguuuuugcuGGGGGCGAAAUAGGAUCGACGAAGGUGUAAAGAUCGUACUUUUGCC
CGGCAUUGUACCACCGUCAUCGGGCUAAACUUAUAGUUGCCAACGACAACUAUGCGGAAGCACGUCUCGCUGCUUAAUGC
AGUGCGAUAGCUUCAAAUCAAGCCCUAGGGGUUCGCACUUCUAGGCGGGGUUCGGAGGUACCUGGCAACAGAAACCUCCA
CUU
>Mesrhz_bnc1_0218 Mesorhizobium sp. pre-tmRNA (precursor permuted) AAED02000010:160709-161040; NZ_AAED02000010:160709-161040
GUCGGUUUCGGCCGACUAUGGCGAUAAACGGACGAUGCAAUAAGCCAUUCGGACCCGGGGGCGGUACCCGGCGCCUCCAC
CAgaaaccgccggcccaugcgaugcgaagggcggcuucugauGGGGGCGAAAUAGGAUCGACGAGGGUGUAAAGAUCGGA
CUUUCGCUCGGCAUGGUACCACCGUUAUCGGACCGAACCUUAUAGUUGCCAACGACAACUAUGCGGAAGCACGUCUCGCU
GCUUAAUGCAGCGCGAUAGCUUCAAUUCAAGUCUCAGGCCGUCGCAGGCCUGAGCGGGGUUCGGAGGCACCUGGCAACAG
AAGCCUCCACUU
>Uncul_whal5_0681 Uncultured whale5 pre-tmRNA (3-prime end unsequenced) (precursor permuted) AAFZ01023560:592-836
GUCAGGAAACUGACUAUGGCGAUAAACUGAUUUCGUAAUAAACCAUUCGGACCCGGGGGCGGUACCCGGCGCCUCCACCA
uaagcucagguugagcguauucagguaccaauagccugaguuuuugauGGGGGCGAAAUAGGAUCGACGAGGGUGUAAAG
GAUCUUCUUUUGCUCGGUAUGGCUCCACCGUUAUCGGGCCAUUAUGAUAGUUGCAAAUGACAACUACGCUGAGGCACGUC
UAGCU
>Uncul_whal4_0682 Uncultured whale4 pre-tmRNA (precursor permuted) AAFZ01020819:329-9
GUCAGCUUGCUGACUAUGGCGAUAAACGCGCUCGUAAUAACCAGACCGGACCCGGGGGCAGUACCCGGCGGCUCCACCAu
uaccuuccgcuuguauuggcaagcgaauauGGGGCCGAAACAGGAUCGACGGAUGGGUAAAGGAGACUGCUUUUGCCCGG
GUGAGGCCCGAUACAGGCUCAUUCUUAAAGUUGCCAAUGACAACUUUGCUGAAGAAGUCCGUCUCGCUGCCUAGUCAGCG
CGUCUAACUUCGACAUGAACUCCUGGGUGUUCGCACGCUCAGGCGGGGUCCGGAGGCACCUGGCAACAGAAGCCUCCACU
U
>Barto_hense_0219 Bartonella henselae pre-tmRNA (precursor permuted) BX897699:1215960-1216277; NC_005956:1215960-1216277
GCUGGCUUGCCAGCUAUGGUAAUAAAUGGACAAUGAAAUAAGCUUAUUGGACCCGGGGGCGGUACCCGGCGCCUCCACCA
aaauauaauuuguuuuuuuauauuuuaguGGGGGCGAAACAGGAUCGACAAAAGUGUAAAGAUUGCUCUUUUACUCGGUA
UAGUACCACCGUUAUCGGACUAAAUGAGUAGUUGCAAAUGACAACUAUGCGGAAGCACGUCUCGCUGCCUGAGGUGGUGU
GAAUGCUUCAAACUAAGUCUUAAACCGUCGCAGGUUUAAGCGGGGUUCGAAGGCACCUGGCAACAGAAGCCUUCACUU
>Barto_quint_0220 Bartonella quintana pre-tmRNA (precursor permuted) BX897700:1020861-1021175; NC_005955:1020861-1021175
GCUGGCUUACCAGCUAUGGUAAUAAAUGGACAAUGAAAUAAACUCAUUGGACCCGGGGGCGGUACCCGGCGCCUCCACCA
aaauauaacaaaaauuauauuuugguGGGGGCGAAAUAGGAUCGACAAGGGUGUAAAGAUUGCUCUUUUACUCGGCAUAG
UACCACCGUCAUCGGACUAAAUGAGUAGUUGCAAAUGACAACUAUGCGGAAGCACGUCUCGCUGCUUAAUGUAGUGUGAA
UGUUUCAAACUAAGCCUUAAAUCGUCGCAGAUUUAAGCGGGGUUCGAAGGCACCUGGCAACAGAAGCCUUCACUU
>Bruce_abort_0221 Brucella abortus pre-tmRNA (precursor permuted) AE017223:1372529-1372857; NC_006932:1372529-1372857; AM040264:1369679-1370007; NC_007618:1369679-1370007
GUCGGCGCAAGCCGACUAUGGUGAUAAACGGACGGUGUAAUAAACCCAUUGGACCCGGGGGCGGUACCCGGCGCCUCCAC
CAcagcacagcuugccgaucaggcuguguuguggcGGGGGCGAAACAGGAUCGACAAGGGUGUAAAGAUCGCUCUUUUAC
UCGGCAUGAUACCACCGUUAUCGGGUCAACAGAGUAGUUGCAAAUGACAACAAUGCUCAGGGUUAUGCUCUCGCUGCCUA
AUGGCGGUGCGGGAAACCCACUCUAAAGUCCUUAGGGUUAGCCCCUUAAGGCGGGGUUCGGAGGCACCUGGCAACAGAAG
CCUCCACUU
>Bruce_melit_0222 Brucella melitensis pre-tmRNA (precursor permuted) AE009503:3447-3119; NC_003317:633750-633422
GUCGGCGCAAGCCGACUAUGGUGAUAAACGGACGGUGUAAUAAACCCAUUGGACCCGGGGGCGGUACCCGGCGCCUCCAC
CAaagcacagcuugccgaucaggcuguguuguggcGGGGGCGAAACAGGAUCGACAAGGGUGUAAAGAUCGCUCUUUUAC
UCGGCAUGAUACCACCGUUAUCGGGUCAACAGAGUAGUUGCAAAUGACAACAAUGCUCAGGGUUAUGCUCUCGCUGCCUA
AUGGCGGUGCGGGAAACCCACUCUAAAGUCCUUAGGGUUAGCCCCUUAAGGCGGGGUUCGGAGGCACCUGGCAACAGAAG
CCUCCACUU
>Brucel_suis_0223 Brucella suis pre-tmRNA (precursor permuted) AE014291:1354428-1354756; NC_004310:1354428-1354756
GUCGGCGCAAGCCGACUAUGGUGAUAAACGGACGGUGUAAUAAACCCAUUGGACCCGGGGGCGGUACCCGGCGCCUCCAC
CAcagcacagcuugccgaucaggcuguguuguggcGGGGGCGAAACAGGAUCGACAAGGGUGUAAAGAUCGCUCUUUUAC
UCGGCAUGAUACCACCGUUAUCGGGUCAACAGAGUAGUUGCAAAUGACAACAAUGCUCAGGGUUAUGCUCUCGCUGCCUA
AUGGCGGUGCGGGAAACCCACUCUAAAGUCCUUAGGGUUAGCCCCUUAAGGCGGGGUUCGGAGGCACCUGGCAACAGAAG
CCUCCACUU
>Rhops_palu1_0211 Rhodopseudomonas palustris pre-tmRNA, version 1 (precursor permuted) {CGA009} BX572604:108922-109252; NC_005296:3948454-3948784
GUCGGGGCAACCCGACUAUGGAAAUAAAUGGCCGCCGCAAUAAACCAUUCGGACCCGGGGGCGGUACCCGGCGCCUCCAC
CcaagcccguucuucucguuucgaaaaggcggguuucggcGGGGGCGAAAUAGGAUCGACGAGGGCGUAAAGGGCUCGCU
UUUUCCCGGUAUUGUUCCGCCGUUAUCGGGCUACUGCAAUAGUUGCCAACGACAACUAUGCUCCGGUUGCUCAGGCUGCG
UAACGCAGUUUGAAAGACCACUUUAAAGCCCUAACGGGUUAAGCUCCGUUAGGCGGGGUUCGGAGGCACCUGGCAACAGA
AGCCUCCACUC
>Rhops_palu2_0697 Rhodopseudomonas palustris pre-tmRNA, version 2 (precursor permuted) {HaA2} CP000250:2312218-2311888; NC_007778:2312218-2311888
GUCGGGGCAACCCGACUAUGGAAAUAAAUGGCCGUCGUAAUAAACCAUUCGGACCCGGGGGCAGUACCCGGCGCCUCCAC
CcaagcccgccuguuucgaguuggaagcgcgggcuucggcGGGGGCGAAACAGGAUCGACGAGGGCGUAAAGGGCUUGCU
UUUUCCCGGUAUUGUUCCGCCGUUAUCGGGCUAUGCAAUAGUUGCCAACGACAACUAUGCUCCGGUUGCUCAGGCUGCGU
AACGCAGUUUGAAAGACCAAGUCUGAAGUCCUGACGGGUUAAGCUCCGUUUGGCGGGGUUCGGAGGCACCUGGCAACAGA
AGCCUCCACUU
>Rhops_palu3_0698 Rhodopseudomonas palustris pre-tmRNA, version 3 (precursor permuted) {BisB18} AALR01000022:7823-7507; NZ_AALR01000022:7823-7507
GCCAGUGCGCUGGCUAUGACAAUAAACCGCCGUCGCAAUAAACCAUUCGGACCCGGGGGCAGUACCCGGCGCCUCCACCA
aaguccgcgaaauccgcgggcuucggcGGGGGCGAAACAGGAUCGACGAGGGCGUAAAGGGCGAGCUUUUGUCCGGAAUG
GUUCCGCCGUGAUCGGGCCAUGCAAUAGUUGCCAACGACAACUAUGCUCCGGUUGCUCAGGCAGCGUAACGCUGCUUGAA
AGACCACAUGAAAGUCCUGGCGGGUUAAGCGCCGCCAGGCGGGGUUCGGAGGCGCCUGGCAACAGAAGCCUCCACUG
>Rhops_palu4_0699 Rhodopseudomonas palustris pre-tmRNA, version 4 (precursor permuted) {BisB18} AALR01000002:125297-125614; NZ_AALR01000002:125297-125614
GUCGCAAGACGAUGGCGCUGAAACUCAACGCGGACUGCGGGCAGACCCGGGGGCAGUACCCGGCGCCUCCACCcgagcag
cugacaaugcgagaucucguuuuuacgaguucucauuccgugcgacggacuuugucgagcugcuccggcGGGGGCGAAAC
AGGAUCGAUGGCCGCGAAGAAGUGUUGAAUUGUUCCCGGCAUGAUACCGCCGUUAUCGGGUCAAAACCUAAAUGCAAACG
AUAACGUUCGCAUGAACGAAGUGCGCCUCGCGGCGUAACCGUUCGGGGUAGGUCCACCUAGCAACAGAACGGCCAUGG
>Rhops_palu5_0706 Rhodopseudomonas palustris pre-tmRNA, version 5 (precursor permuted) {BisB5} AAKZ01000002:193709-193390; NZ_AAKZ01000002:193709-193390
GUCGGGGCAACCCGACUAUGGAAAUAAAUGGCCGUCGUAAUAAACCAUUCGGACCCGGGGGCAGUACCCGGCGCCUCCAC
CAaagcccgugauuccgcggguuucggcGGGGGCGAAAUAGGAUCGACGAGGGCGUAAAGGGCUUGCUUUUUCUCGGUAU
UGUUCCGCCGUUAUCGGGCUAAUGCAAUAGUUGCCAACGACAACUAUGCUCCGGUUGCUCAGGCUGCGUAACGCGGUUUG
AAAGACCAAGUCUAAAGUCCUAACGGGUUAAGCUCCGUUAGGCGGGGUUCGGAGGCACCUGGCAACAGAAGCCUCCACUU
>Brdrz_japon_0212 Bradyrhizobium japonicum pre-tmRNA (precursor permuted) M73823:802-1131; BA000040:7174984-7175313; NC_004463:7174984-7175313
GCCGGUUCGCCGGCUAUGGAAAUAAACGGUCGUCGUAAUAAACCAUUCGGACCCGGGGGCGGUACCCGGCGCCUCCACCA
aagcccaccagcgggcuagcccuagaagcggguuuuggcGGGGGCGAAAUAGGAUCGACGAGGGCGUAAAGGGCGUGCUU
UUUCCCGGUAUUGUUCCGCCGUUAUCGGGCUACUGCAAUAGUUGCCAACGACAACUUUGCUCCGGUUGCUCAGGCUGCGU
AACGCAGUUUGAAAGACCAUCUUAAAGUCCUAACGGGUUAAGCUCCGUUAGGCGGGGUUCGGAGGCACCUGGCAACAGAA
GCCUCCACUU
>Nitbr_hambu_0707 Nitrobacter hamburgensis pre-tmRNA (precursor permuted) AAIS01000001:750044-749708; NZ_AAIS01000001:750044-749708
GCCGGUUCGCCGGCUAUGGAAAUAAACGGCCGUCGUAAUAAACCAUUCGGACCCGGGGGCAGUACCCGGCGCCUCCACCA
gaucccgacccgaacccaugauacgcauaaauuuggcggguuccggcGGGGGCGAAACAGGAUCGACGAGGGCGUAAAGG
GCUCGCUUUUUCUCGGUAUGGUUCCGCCGUUAUCGGGCUAUGCAAUAGUUGCAAACGACAACUAUGCUCCGGUUGCUCAG
GCUGCGUAACGCAGUUUGAAAGACCAUUCUGAAGUCCUGACGGGUUAAGCUCCGUCAGGCGGGGUUCGGAGGCACCUGGC
AACAGAAGCCUCCACUC
>Nitbr_winog_0601 Nitrobacter winogradskyi pre-tmRNA (precursor permuted) CP000115:2573201-2573521; NC_007406:2573185-2573521
GCCGGUUCGCCGGCUAUGGAAAUAAAUGGCCGCCGCAAUAAACCAUUCGGACCCGGGGGCAGUACCCGGCGCCUCCACCA
gagcccgaacguggcugauucggguucuggcGGGGGCGAAACAGGAUCGACGAGGGCGUAAAGGGCUCGCUUUUUCCCGG
UAUGGUUCCGCCGUUAUCGGGCUAUGCAAUAGUUGCAAACGACAACUAUGCUCCGGUUGCUCAGGCUGCGUAACGCAGUU
UGAAAGACCACUCUGAAGCCCUGACGGGUUAAGCUCCGUCAGGCGGGGUCCGGAGGCACCUGGCAACAGAAGCCUCCACU
U
>Nitbr_Nb311_0730 Nitrobacter Nb-311A pre-tmRNA (precursor permuted) AAMY01000004:164247-163928; NZ_AAMY01000004:164247-163928
GCCGGUUCGCCGGCUAUGGAAAUAAAUGGCCGCCGCAAUAAACCAUUCGGACCCGGGGGCAGUACCCGGCGCCUCCACCA
gagcccgacucggcagauuuggguucuggcGGGGGCGAAACAGGAUCGACGAGGGCGUAAAGGGCUCGCUUUUUCCCGGU
AUGGUUCCGCCGUUAUCGGGCUAUGCAAUAGUUGCAAACGACAACUAUGCUCCGGUUGCUCAGGCUGCGUAACGCAGUUU
GAAAGACCACUCUGAAGUCCUGAUGGGUUAAGCUCCGUCAGGCGGGGUUCGGAGGCACCUGGCAACAGAAGCCUCCACUC
>Uncul_farm1_0683 Uncultured farm1 pre-tmRNA (precursor permuted) AAFX01020036:493-806
GCCGGCGCAAGCCGGAUAUGGCGAUAAACGGCCGUCGUAAUAAACCUUUCGGACCCGGGGGCAGUACCCGGCGGCUCCAC
CcaagcccggcgcggacgggcuucggcGGGGCCGAAACAGGAUCGACGAGGGCGUAAAAGGCGCGCUUUUGCCCGUUAUG
GUUCCGUCGUUAUCGGACCAAAUCAUAGUUGCCAACGACAACUAUGCUCCGGUUGCUCAGGCCGCGUAGCGGCUUGAAAG
ACCGAUUNCAGUCCUAGCGGGUUAAGCUCCGAUAGGCGGGGUCCGGAGGCACCUGGCAACAGAAGCCUCCACUA
>Mebrm_extor_0224 Methylobacterium extorquens pre-tmRNA (precursor permuted)
GCCGGUCGCAAGGCCGGCUAUGGCGAUAAACGUUCUUCGAAAUAAACCUAUCGGACCCGGGGGCGGUACCCGGCGCCUCC
ACCcgaacccaggaccgauggccgcacggccucagcguguuggguuccggcGGGGGCGAAAUAGGAUCGACGAGGGCGUA
AAGGGUGAACUUUCGCUCGGCAUGGUUCCGCCGUUAUCGGGCCUUUGCAAUAGUUGCCAACGACAACUUUGCUCCGGUGG
CUGUCGCCGCGUAAGCGGUGCCAAAAACCGACCUAAAGUCCUAGCGGGUAGCACCGCAUAGGCGGGGUUCGGAGGUACCU
GGCAACAGAAACCUCCACUC
>Magsp_magn1_0225 Magnetospirillum magnetotacticum pre-tmRNA, version 1 (precursor permuted) AAAP01002233:728-388; NZ_AAAP01002233:728-388
GCCGGUCGCAAGGCCGGCUAUGGCGAUAAACGUUCUUCGCAAUAAACCUAUCGGACCCGGGGGCGGUACCCGGCGCCUCC
ACCAgaacccaggaccgauggccgcagagugucggcgguguuggguuccggcGGGGGCGAAAUAGGAUCGACGAGGGCGU
AAAGGGGGAGCUUUCGCUCGGCAUGGUUCCGCCGUUAUCGGGCCUUUGCAAUAGUUGCCAACGACAACUUUGCUCCGGUG
GCUGUCGCCGCGUAAGCGGUGCCAAAAACCGACCUAAAGUCCUAGCGGGUAGCACCGCAUAGGCGGGGUUCGGAGGUACC
UGGCAACAGAAACCUCCACUC
>Magsp_magn2_0226 Magnetospirillum magnetotacticum pre-tmRNA, version 2 (precursor permuted) AAAP01003788:2341-2058; NZ_AAAP01003788:2341-2058
GCCGGGCAACCGGCUAUGACGCUAAACGCCACACGGAAUAGACGUUACGGACCCGGGGGCGGUACCCGGCGCCUCCACCA
aauuucccggcccacgacgcgggccggaaccuuGGGGGCGAAAUAGGAUCGACGUGCGCAGUAAAGGUCUGGUUUGCGUU
CGGCAUGAUACCACCGUUAUCGGGUCAAUCCUAACAAGUGCCAACGACAACGUUGAACUUGCCGCUGCGGCUUAGUCCGU
AAGCGCGGUCCGGGGGGAACCGGGCAACAGAACUCCCCCCACUU
>Alprot_SAR1_0620 Alphaproteobacteria SAR-1 pre-tmRNA (precursor permuted) AACY01003734:1166-1422; AACY01024752:6717-6939
GCUGGGGAUAUCCCAGCUAUAGGGAUAAACGGCUUGCGUAAUACCCAUUACGGACCCGGGGGCGGUACCCGGCACCUCCA
CCAuaaauuaGGGGGUGAUAUAGGAUCGACGAAUGCUUAAAGGUAAGUUUUUCUCUCGGUAUUGUACCACCGUUAUCGGG
CUAUUUUAUAAAUGCUAACGAUGAAUUAGCGCUCGCUGCUUAAUCUAAUUAGGUAAGCGCGGUUCGGGAGACACCGGGCA
ACAGAAGUCUCCCACUU
>Uncul_whal3_0684 Uncultured whale3 pre-tmRNA (precursor permuted) AAFZ01019330:596-281
GCCGGCUUGCCGGCUACGGUGCUAAACGCCAAGCGGAAUAAGCACAGCGGACCCGGGGGCGGUACCCGGCGCCUCCACCA
caagcugcguuugagauuuuuaacggaauuucggcgcgcgccacgcgguuugugauGGGGGCGAAAUAGGAUCGACGCGU
GUAAUAAAGGCUUGGUUUGUGCUCGGCAUGGUACCGCCGAUAUCGGGCCAUUUUGAUAAGUGCCAAUGAUAACACAGAAG
CACUUGCUGUCGCGGCCUAACACGCCAUAACGACAACGGGGUUCGGGCGGCACCUGGCAACAGAAGCCGCCCACUU
>Rhspi_rubru_0228 Rhodospirillum rubrum pre-tmRNA (precursor permuted) CP000230:2560697-2560995; NC_007643:2560697-2560995
GCCGGCUUGUCCGGCUAUGACGCUAAACCCUUUAUGGAAUAAGCGUUGUGGACCCGGGGGCGGUACCCGGCGCCUCCACC
AuucgcccaagucuccggccucagcgccggagaccggguuccuGGGGGCGAAAUAGGAUCGACACGCGUGGUAAAGAUAA
AGGUUGUGUUCGGCAUGGUAUCCACCGUUAUCGGGCCAACUCUGACAAGUGCCAACGACAACGUUGAACUUGCCGCUGCG
GCCUAAACACCCGUAAGCGCGGUUCGGGGGGGCACCGGGCAACAGAAGCCCCCCCACUU
>Gluco_oxyda_0227 Gluconobacter oxydans pre-tmRNA (precursor permuted) CP000009:1559383-1559096; NC_006677:1559383-1559096; AG935750:120-169
GCAAGGGGUUCGUCCCCGGCUAUGGCGAUAAACGGUAAGUGAAAUAAGUGUUGUGGACCCGGGGGCAGUGCCCGGCGUCU
CCACCAagaacaaccccucgcaaaaggggucuguGGGGACGAAACAGGCUCGACACGCAUGGUAAAGACUUAUCUUUUGC
CCGGCAUUGUACCACCGUCAUCGGGCUAAACUUACAAGUGCCAACGAUAACUCAGAGGUGCUCGCUGUCGCUGCAUAAGC
GAUAAGCGCGGUUCGGGAGGGCACCGGGCAACAGAAGCCCUCCCACCU
>Nsphg_aroma_0229 Novosphingobium aromaticivorans pre-tmRNA (precursor permuted) AAAV03000001:1112667-1112996; NZ_AAAV03000001:1112667-1112996
GCCGGUUCAGGCCGGCUAUGGUGAUAAACUGCGGCGUGCAAUAGGCACAGCGGACCCGGGGGCGGUACCCGGCGGCUCCA
CCAucaccaccggcugcaaaaggucgggccuuguugucgcaaggguguugauGGGGCCGAACUAGGAUCGACGUGUGUUG
AAAAGCGUUGUUUUCACCCGGGCUGAGUAACCCGUUCAAGGCUCAAAACUCACAAGUGCCAACGACAACGAAGCACUUGC
UCUCGCGGCGUAAUUCUAGGGGCUAACGCCCUGAAGUUACUAAGUUAGAGCACGGUUCGGACCGAACCGGGUAACAGAAU
CGGAAACCGG
>Sphpx_alask_0602 Sphingopyxis alaskensis pre-tmRNA (precursor permuted) AAIP01000003:57449-57130; NZ_AAIP01000003:57449-57130
GUCGGCUUCGGCCGACUAUGAGGAUAAAUGGUGUCGUGGAAUAGACACAGCGGACCCGGGGGCAGUACCCGGCGGCUCCA
CCAcaaacccgcguuucuucgaaggacgcgcggguuucugacGGGGCCGAACCAGGAUCGACGUGUGUUCAAAGACGAUG
CUUUCUUCCGGGCUGAGUAACCCGUUAAAGGCUCAAAACCAAUAAGUGCUAACGAUAACGAAGCACUCGCUCUUGCUGCC
UGACCGAUAAGCCUCACGGCCUAAGGUUAGACAAAUAGAACGCGGUUCGGACCGAACCGGGCAACAGAAUCGGAAACCAG
>Eryba_litor_0676 Erythrobacter litoralis pre-tmRNA (precursor permuted) CP000157:1820786-1820476; NC_007722:1820786-1820476
GUCCGUUUCGGCGGGCUAUGGUGAUAAACUGCGGUGUGUAAUAGACGCAACGGACCCGGGGGCAGUACCCGGCGGCUCCA
CCAaaaagcgcauauuuacaggcgcuuccugauGGGGCCGAACCAGGAUCGACGUGUGUUGAAAGGCAUUGUUUUCACCC
GGGCUGAGUAUCCCGCAAAACUGUUCAAAACACACAAGUGCCAACGAUAACGAAGCACUCGCUCUCGCAGCGUAACAUGA
CGGCCUAACGGCCUAACGUUACAAAGCUAAAGCGCGGUUGGACCCACCGGGCAACAGAAGCGGAUUCCGGG
>Uncul_farm4_0689 Uncultured farm4 pre-tmRNA (precursor permuted) AAFX01039956:512-199; AAFX01009971:471-158
GCCGGGGCAACCCGGCUAUGUCGGUAGAAUGUCGGGUGGAAUAAGCAUUUCGGACCCGGGGGGCAGUACCCCGGCGCCUC
CACCAccagcagcaacggaugugccgagcuguugcugauGGGGGCGAAAUAGGAUCGACGAGUGCAGUAAAGGCCUGGUU
GCCGAUCGGUAUGAGACCACCGUGACGGCUCAUCACACAAGUGCCAACGAUAACGAGGCGCUCGCUCUUGCUGCGUAACU
GAGGUCCUAACGGAUUGAAGUUACAAGGCUAAAGCGCGGUUGGACCCCACCGGGCAACAGAAGGGGAUUCCAGC
>Uncul_farm5_0685 Uncultured farm5 pre-tmRNA (precursor permuted) AAFX01005130:1417-1100
GCCGGGGCAACUCGGCUAUGUCGGUAGACUGUCGCGUGGAAUAAACACUUCGGACCCGGGGGGCAGUACCCCGGCGCCUC
CACCAccagccgcaggccgaagauuuucggcgguugcugacGGGGGCGAAAUAGGAUCGACGAGUGCAAUAAAGACGCGG
UUGCCGAUCGGUAUGGAUGCCACCGUGACGGCUCAAUCACACAAGUGCCAACGAUAACGAGGCGCUCGCUAUUGCUGCGU
AACUGACGGCCUGACGGUCUGACGUUACAAAGCUAAAGCGCGGUUGGACCCCACCGGGCAACAGAAGGGGAUUCCAGC
>Zymom_mobil_0230 Zymomonas mobilis pre-tmRNA (precursor permuted) AE008692:540503-540191; NC_006526:540503-540191
GUCACUUCGGUGACUACGAUGGUAGACUGUUAAGUGAAAUAGACUCGACGGACCCGGAGGGCAGUACUCCGGCGCCUCCA
CCAacagccgcggauagcaagccacuguuguugauGGGGGCGAAACAGGAUCGACGUGUGUAGUAAAGACUUGAUUGCCA
UCCGGCGUGAUUGAGCCGUUAAACCGAUCAUUUUUAUAAGUGCCAACGAUAACGAGGUACUCGCUGUUGCUGCGUAAUGG
AAACCUUCACGGGUAGACAUUACUAAGUAAGAGCGCGGUUGGGCUGCACCGGGCAACAGAAGCAGAUUCCAGC
>Sphin_elode_0231 Sphingomonas elodea pre-tmRNA (precursor permuted)
GCCGGGUUCGCCCGGCUAUGGCGAUAAACAAUGGCGUAUAAUAGAUGCAGCGGACCCGGGGGCAGUACCCGGCGGCUCCA
CCAuaaccggugguguaucuggacaccguuucugacGGGGCCGAACCAGGAUCGACGUGUAUUGAAAAGCGCUGUCUUCG
CUCGGAAUGGGACCACCGCAACGGCCCAUUACACAAGUGCCAACGAUAACGAAGCACUCGCUAUUGCGGCGUAACCUCAC
GGCUUAACGGCCUAAGGUUAUUCUAAAAUGCGCGGUUGGGCCACACCGGGCAACAGAAGUGGACUCCAGC
>Ehrli_chaff_0232 Ehrlichia chaffeensis pre-tmRNA (precursor permuted)
GUGCUUUUAGCACUAUGGCAAUAAAGGCAUCUUAAAAUAGAUGUAUUGGACCCGAGGGCAGUGCUCGGCAUCUCCACuuc
aggucauGGGGAUGAAACAGGAUCGACAUGCAUAGUAAAGGGGAUAGUUUUUGCUCGGUGAGAAAACAGCCGUUUAAAUG
CUCAAAAUUUAUAAGUGCAAACGAUAAUUUCGUUUUUGCUAAUGAUAAUAAUAGCAGUGCUAACUUAGUAGCUGCUUAGU
UUUAUUAUUAGCGCGGUUUUUUUAAGGGUUUUCCGGGCAACAGAAAAACCCUUUUUU
>Ehrli_rumi1_0233 Ehrlichia ruminantium pre-tmRNA, version 1 (precursor permuted) CR767821:595018-594726; NC_005295:595018-594726
GUGCUUUUGCACUAUGGCAAUAAAUGCAUCUUAGAAUAAAUGUAUUGGACCCGAGGGCAGUGCUCGGCAUCUCCACuguu
guuauGGGGAUGAAACAGGCUCGACAUGCAUAGUAAAGGGGAUAGCUUUUGCUCGGUGAGAAAACAGCCGUUUCAAGUGA
UCAAAACUUAUAAGUGCAAACGAUAAUUUCGUUUCUGCUAAUGAUAAUAAUAGCACUGCUAACUUAGUAGCUGCUUAGUU
UUAAAAUUAGCACGGUUUUUUGGGGUUUUCCGGGUAACAGAAAAACCCCUCAC
>Ehrli_rumi2_0603 Ehrlichia ruminantium pre-tmRNA, version 2 (precursor permuted) CR925678:574880-574585; NC_006832:574880-574585; CR925677:570793-570498; NC_006831:570793-570498
GUGCUUUUGCACUAUGGCAAUAAAUGCAUCUUAGAAUAAAUGUAUUGGACCCGAGGGCAGUGCUCGGCAUCUCCACuguu
guuauuauGGGGAUGAAACAGGCUCGACAUGCAUAGUAAAGGGGAUAGCUUUUGCUCGGUGAGAAAACAGCCGUUUCAAG
UGAUCAAAACUUAUAAGUGCAAACGAUAAUUUCGUUUCCGCUAAUGAUAAUAAUAGCACUGCUAACUUAGUAGCUGCUUA
GUUUUAUAAUUAGCACGGUUUUUUGGGGUUUUCCGGGUAACAGAAAAACCCCUCCC
>Ehrli_canis_0234 Ehrlichia canis pre-tmRNA (precursor permuted) CP000107:489297-488998; NC_007354:489297-488998
GUGUUUUAAGCACUAUGGCAAUAAAGGCAUCUUAAAAUAGAUGUAUUGGACCCGAGGGCAGUGCUCGGCAUCUCCACuua
uuacuauGGGGGUGAAACAGGAUCGACAUGCAUAGUAAAGGGGAUAGUUUUUGCCCGGUGAGAAAGCAGCCGUUUAAAUG
CUCAAAAUUUAUAAGUGCAAACGAUAAUUUCGUUUUUGCAAAUGACAAUAAUAGCAGUGUUGCUGGCUUAGUGGCUGCUU
AGUUUUGUCAUUAGCGCGGUUUUUUAGAGGGUUUCCCGGGCAACAGAAAAAUCCUCUUUU
>Anapl_phago_0235 Anaplasma phagocytophilum pre-tmRNA (precursor permuted)
GUGAUCUUUCACUAUGGCAAUAAAAGUUACUUGGAAUAGACGUUUUGGACCCGAGGGCAGUGCUCGGCAUCUCCACgugu
uugcGGGGAUGAGACAGGUUAGACAGGCGUAGUAAAGAAGCUGGCUGUUGCUCGGUGGGAAUUCCAGCCGUAUAAUUGGG
UCAUAUUUAUAAGUGCAAACGAUGAUUUCGUUGCCGCUAAUGACAACGUGGAAACAGCUUUCGUAGCUGCAGCCUAGUGU
GCCUUUAGCGCGGUCUCGGAGGCUUACCGGGCAACAGAAAAGCCUCCAUUU
>Anapl_margi_0236 Anaplasma marginale pre-tmRNA (precursor permuted) CP000030:459795-459500; NC_004842:459795-459500
GUGGUUUCACUAUGGCAAUAAAGGCCUCUUGGAAUAGGCGUUUUGGACCCGAGGGCAGUGCUCGGCAUCUCCACuguugc
uuuguauGGGGAUGAAACAGGAUAGACAGACGCAAUAAAGAGGACGGCGUUUGCUCGGUGGGAAUUCCAGCCGUAUAAGU
GGGUCAUUUUUAUAAGUGCAAACGAUGAUUUCGUUGCCGCUAAUGAUAACAUGGAAACAGCUUUCGUAGCUGCUGCCUAG
UUUUUGUCUUUAGCGCGGUUUUGGGGGCUUACCGGGCAACAGAAAAGCCCCCGCCA
>Neori_senne_0237 Neorickettsia sennetsu pre-tmRNA (precursor permuted)
GCGCUGUUUUGCGCUAUGACAAUAAAUGGUUUUUCGUAAUAGGUAUCUUGGACCCGAAGGCGGAGUUCGGCACCUCCACC
guuuugcGGGGGUGAUUUAGUUUCGACAGGUAUUAAAGGCUAAACUUUUGUUCGGUUGAGUGAUCCCGUGAUUCACAACA
CUUUUUAUAAGUGCAAACGACAAUUUUGAAGCUGGUUCUGCUGAAUAUGCAGUAGCUGCCUAGUUUAUAGGUAGUACAGC
GCGGUUUGGGGCGGCCGGUCAACAGAACUGCCCCAGUU
>Wolbachia_1_0238 Wolbachia sp. pre-tmRNA, version 1 (precursor permuted) {Dros. melan.} AE017196:117339-117038; NC_002978:117339-117038
GUACAUUUUGUGUACUAUAGCAAUAAAAUUACCUUGUAAUAGGUGUAUUGGACCCGAGGGCAGUACUCGGCGUCUCCACC
AuguuuuuuaauuuauguGGGGACGAAUAAGGAUCGACAUGCAUAGUAAAGAUGGUAGCUUUGCUCGGUUAGACACCACC
GCUAAGAGUUCAUAAUUUAAAUGCAAACGAUAAUUUUGCUGCUGAAGACAAUGUCGACGCAAUAGCUGCUUAAUUUAAGC
ACUAUAACUUCAUUGCUAUAAGCACGGUUCAGGGAACGCCGGGUAACAGAAGUUCCCCAAAA
>Wolbachia_2_0239 Wolbachia sp. pre-tmRNA, version 2 (precursor permuted) {Brugia} AE017321:841705-841408; BH767222:87-384; NC_006833:841705-841408
GUGUAUUUUAUACACUAUGGCAAUAAAAUUACCUUGUAAUAGGUGUAUUGGACCCGAGGGCAGUACUCGGCGCCUCCACC
AuguuuuuaauuuacauGGGGGCGAAUAAGAAUCGACAUGCAUAGUAAAGAUGGUAACUUUGCUCGGUUAGAUACCACCG
CUAAGAGUUCAUAGUUUAAACGCAAACGAUAAUUUUGCUGCUGAAGGUGAUGUUGCGGUAGCUGCUUAAUUUAAGCACUA
UAACUUCAUUACUAUAAGCACGGCUUAGGGAACGCCGGGUAACAGAAGUUCCCCCCAG
>Wolbachia_3_0240 Wolbachia sp. pre-tmRNA, version 3 (precursor permuted) {Culex}
GUGUAUUUUUUAUACACUAUGGCAAUAAAAUUACCUUGUAAUAGGUGUAUUGGACCCGAGGGCAGUACUCGGCGCCUCCA
CCAuauuuuuugauugauacGGGGGCGAGUAAGGAUCGACAUGCAUAGUAAAGAUGGUAGCUUUGCUCGGUUAGAUACCA
CCGCUAAGAGUUCACAAUUUAGAUGCAAACGAUAACUUUGCUGCUGAAGACAAUGUUGCAUUAGCUGCUUAAUUUAGGCA
CUAUAACUUCAUCGCUAUAAGCACGGUUUAGGGAACGCCGGGUAACAGAAGUUCCCCCAAA
>Wolbachia_4_0604 Wolbachia sp. pre-tmRNA, version 4 (precursor permuted) {Dros. simul.} AAGC01000039:280-1; NZ_AAGC01000039:280-1; AAGB01000172:1118-1410; NZ_AAGB01000172:1118-1410
GUACAUUUUGUGUACUAUAGCAAUAAAAUUACCUUGUAAUAGGUGUAUUGGACCCGAGGGCAGUACUCGGCGCCUCCACC
AuguuuuuuaauuauacGGGGGCGAUUAAGGAUCGACAUGCAUAGUAAAGAUGGUAGCUUUGCUCGGUUAGACACCACCG
CUAAGAGUUCAUAAUUUAAAUGCAAACGAUAAUUUUGCUGCUGAAGAAUAUCGUGUUGCUGCUUAAUUUAGCACAACCGG
UUUAUUACUAAAGCACGGUUUAGGGAACGCCGGGUAACAGAAGUUCCCCCAAA
>Ricke_prowa_0241 Rickettsia prowazekii pre-tmRNA (precursor permuted) AJ235273:40952-40462; NC_000963:914952-914462
GCUAAUAUAGCUAUAGUAAUAAACGUAAUUUAGAAUAGAGGUUGCGGACUCGGGGGCAGUACCCGACGCCUCCACCAaua
cucgaugaacuucaaaaauuugcugcgucgucuuauuaagugcugugguauuuauguguucaguaacugcuguugcucuu
uguauuguugacucauuguucuuuuuguaguugauuuucguauauucuguaugauuuuaauacagcuuaaauauaugagu
aucauaaacaauugauaaaaugaaagaguaauauugaaaaaagauaaguaguauuuuuuuuGGGGGCGAAAUAGGAUCGA
CGUGCCUAAUAAAAAAGUUGCUUUUACUCGGUAUGAUUCCACCGGUGGUUUUUGCCAUAUGGAUCAAAACAAAGAAACGC
AAACGAUAAUCGUUAUGUAGGUGUUCCAGCUUUAGCUGCAGCUUAAGCCUACGCGGCUGGGGAUUUGCCGGGCAACAGAA
AAAUCCCAUAC
>Ricke_typhi_0242 Rickettsia typhi pre-tmRNA (precursor permuted) AE017197:910802-910292; NC_006142:910802-910292
GCUAAUAUAGCUAUAGUAAUAAACGUAAUUUAGAAUAGAGGUUGCGGACUCGGGGGCAGUACCCGACGCCUCCACCAaua
uucgaugaacuccaaaaauuugcugcgucauuuuauuaagugcuguggucuuuauguguuaaguaacugcucacgcuuuu
uguaguugaucuauauauguaugauuuucgguuuaaauugaauuuaauuuugagaaaugcgcgaaguuuacaaaugaaua
uaugagcuaugagcaucacgaacaauugauaaaaugaaagaguaauauuaaauaaaguaaagauaaguagaauuuuuuGG
GGGCGAAAUAGGAUCGACGUGCCUAAUAAAAAAAUUGCUUUUACUCGGUAUGAUCCCACCGAUGGCUUUUGCCAUAUGGG
UCAAAACAAAGAAACGCAAACGAUAAUAAGCGUUAUGUAGGUGUUGCCGCUUUAGCUGCAGCUUAAUCCUACGCGGCUUG
GGAUUUGCCGGGCAACAGAAAAAUCCCAUGC
>Ricke_akari_0243 Rickettsia akari pre-tmRNA (precursor permuted) AAFE01000001:1045491-1046021; NZ_AAFE01000001:1045491-1046021
GCUAAUAUAGCUAUAGUAAUAAACGUAAUUUAGAAUAGAGGUUGCGGACUCGGGGGCAGUACCCGACGCCUCCACCAaua
cucgaugaacuucacaaauuggcuacuucguccuauaaguacugcggugcucacguauuaaguauacgcuccacuccuug
ucuuauggacccauugcucuuuuugaaguugaucuucguauaccagucgaugucaauacugcuuguacuuuaaaaaguga
auuuuauuuugagaagugagcaccagcagccuauacuuaauaggugaggaugcaaauccuugauaagaugaaauucaauu
uuuaaaguacaagcaguauuuuauGGGGGCGAAAUAGGAUCGACGUGCCUAAUAAAAAGAUUGCUUUUACUCGGGAUGAU
UCCGCCGAUGGCUUUUGCCAUAUGGGUCAAAACAAAGAAACGCAAACGAUAAUAAUCGUUCUGUAGAUUUAGCUCUAGCA
GCUUAAUCCUACGCGGCUGGGGGUUUGCCGGGCAACAGAAAAACCCCACAC
>Ricke_felis_0708 Rickettsia felis pre-tmRNA (precursor permuted) CP000053:199037-199589; NC_007109:199037-199589
GCUAAUAUAGCUAUAGUAAUAAACGUAAUUUAGAAUAGAGGUUGCGGACUCGGGGGCAGUACCCGACGCCUCCACCAaaa
cuuucuaaauaacuugcuucuaaagguaauuuguacgucgaaccgguacucgaauccucacguaccaaguguacgcugcg
guucgaggugaagugucuccuuuuauuagcggcgucauuuagaaaaguuuaaauauauaauauaauaaagaguagacaau
acgaagaucaacuucaaaaagagcaaggaguucacaaggcgaggagcgaagcguauacuuaauacgugaacaccgcagcu
cuuguagaacgacguagccaauuuuugaaguucaucgaguauuuuauGGGGGCGAAAUAGGAUCGACGUACCUAAUAAAA
AGAUUGCUUUUACUCGGGAUGAUUCCGCCGAUGGCUUUGCCAUAUGGGUCAAAACAAAGAAACGCAAACGAUAAUAAUCG
UUAUGUAGGUGCAGCUUUAGCAGCUUAAUCCUACGCGGCUGGGGGUUUGCCGGGCAACAGAAAAACCCCACAU
>Ricke_ricke_0244 Rickettsia rickettsii pre-tmRNA (precursor permuted) AADJ01000001:1026738-1026269; NZ_AADJ01000001:1026738-1026269
GCUAAUAUAGCUAUAGUAAUAAACGUAAUUUAGAAUAGAGGUUGCGGACUCGGGGGCAGUACCCGACGCCUCCACCAaaa
cuuucuaaauaacuugcuccuaaagguaauuuguacgucgauccgguauucgaauccucacguuaauugcguguacccug
cgguucuuuguuccgugucgccuucaaauuucucuuuauucgcuaggucauuuagaaaaguuuaaauauguaauaacucu
uaaagaguagacaauacgaaguucaucgaguauuuuuuGGGGGCGAAAUAGGAUCGACGUGCCUAAUAAAAAGAUUGCUU
UUACUCGGGAUGAUUCCGCCGAUGGCUUGUGCCAUAUGGGUCAAAACAAAGAAACGCAAACGAUAAUAAUCGUUCUGUAG
GUCGUUUAGCUUUAGCAGCUUAAUCCUACGCGGCUGGAGGGUGUGCCGGGCAACAGAAAAACCCUCACUU
>Ricke_cono1_0245 Rickettsia conorii pre-tmRNA, version 1 (precursor permuted) {Malish 7, URRCMFEe8} AE008661:7971-7502; NC_003103:1031288-1030819; AY345096:241-1
GCUAAUAUAGCUAUAGUAAUAAACGUAAUUUAGAAUAGAGGUUGCGGACUCGGGGGCAGUACCCGACGCCUCCACCAaaa
cuuucuaaauaacuugcuccuaaagguaauuuguacgucgauccgguauucgaauccucacguuacuugcguguacccug
cgguucugcguuccguguugccuucaaauuucucuuuauuagcuacgucauuuagaaaaguuuaaauauguaauaacucu
uaaagaguagacaauacgaaguucaucgaguauuuuugGGGGGCGAAAUAGGAUCGACGUGCCUAAUAAAAAGAUUGCUU
UUACUCGGGAUGAUUCCGCCGAUGGCUUGUGCCAUAUGGGUCAAAACAAAGAAACGCAAACGAUAAUAAUCGUUCUGUAG
GUCAUUUAGCUUUAGCAGCUUAAUCCUACGCGGCUGGAGGGUGUGCCGGGCAACAGAACAACCCUCACUU
>Ricke_cono2_0246 Rickettsia conorii pre-tmRNA, version 2 (ends unsequenced) (precursor permuted) {URRCMFEe5} AY345095:241-1
CCAaaacuuucuaaauaacuugcuccuaaagguaauuuguaugucgauccgguauucgaauccucacguuacuugcgugu
acccugcgguucugcguuccguguugccuucaaauuucucuuuauuagcuacgucauuuagaaaaguuuaaauauguaau
aacucuuaaagaguagacaauacgaaguucaucgaguauuuuugGGGGGCGAAAUAGGAUCGACGUGCCUAAUAAAAAGA
UUGCUUUUACU
>Ricke_cono3_0247 Rickettsia conorii pre-tmRNA, version 3 (ends unsequenced) (precursor permuted) {URRCMFEe32} AY345094:241-1
CCAaaacuuucuaaauaacuugcuccuaaagguaauuuguacgucgauccgguauucgaauccucacguuacuugcgugu
acccugcgguucugcguuccguguugccuucaaauuucucuuuauuagcuacgucauuuagaaaaguuuaaauauguaau
aacucuuaaagaguagacaauacgaaguucaucgaguauuuuugGGGGGCGAAAUAGGAUCGACGUGCCUAAUAAAAAGU
UUGCUUUUACU
>Ricke_sibir_0248 Rickettsia sibirica pre-tmRNA (precursor permuted) AABW01000001:899163-899632; NZ_AABW01000001:899163-899632
GCUAAUAUAGCUAUAGUAAUAAACGUAAUUUAGAAUAGAGGUUGCGGACUCGGGGGCAGUACCCGACGCCUCCACCAaaa
cuuucuaaauaacuugcuccuaaagguaauuuguacgucgauccgguauucgaauccucacguuacuugcguguacccug
caguucugcguuccguguugccuucaaauuucucuuuauuagcuacgucauuuagaaaaguuuaaauauguaauaacucu
uaaagaguagacaauacgaaguucaucgaguauuuuugGGGGGCGAAAUAGGAUCGACGUGCCUAAUAAAAAGAUUGCUU
UUACUCGGGAUGAUUCCGCCGAUGGCUUGUGCCAUAUGGGUCAAAACAAAGAAACGCAAACGAUAAUAAUCGUUCUGUAG
GUCAUUUAGCUUUAGCAGCUUAAUCCUACGCGGCUGGAGGGUGUGCCGGGCAACAGAACAACCCUCACUU
>Tremb_prin1_0249 Tremblaya princeps pre-tmRNA, version 1 {Dysmicoccus} AF481102:4584-4321
GGGGAUGACAGGGAUUCGACACGGGGCAAGGGAUGGGGUGCCAUGCCGAACAGCCCAACGUUAGGGGCACGAAAGGUGCA
CCAAGUAAUAGGUUCACCAUUGUGGCUAACGAUUGCAUCGACGCGUUAGUCAGAAGAGCAGUGGUAUAGUGCGAAGGUAC
ACUGAGGGACUAGGCUGACGGUCAUAGUGCGACUGUAAACAAAGCAUGUUGUGCACCCCACACCUCCCUGCUGGACGUGG
GUUCAAUUCCCACCAUCUCCAggc
>Tremb_prin2_0250 Tremblaya princeps tmRNA, version 2 (ends unsequenced) {Ferrisia} AY313266:1-223
ACGGGGCAAGGGAUGGGGUGCCAUGCCGAGCAGCCCAACGUUAGGGGCACGAAAGGUGCACCGAGUAAUAGGUUCACCAU
GGUGGCUAACGAUAGAACUUUCGCGUUGGUCGGAAGAGCAGCGGUAUAGUGCGAAGGUUAUACUGAUGGACUAGGCUGAC
GGUCAUAGUGCGACUGUAAACAAAGCAUGUGGUCGCACCCCACACCCUCCCUGCUGGACGUGG
>Tremb_prin3_0251 Tremblaya princeps tmRNA, version 3 (ends unsequenced) {Maconellicoccus} AY313267:1-220
ACGGGGUAAGGGUUGGGGUGCCAUGCCGAGCCGCCCUACGUAAAGGGCACGAACGGUGCACCACGCAAUAGGUUCACCAU
GGUGGCUAACGAUAGCAUGUUCGCGUUGGCUGGAAGAGCAGCGGUGUAGCAUGACGACCCACUGAUGGAAUAGGCGGCCG
AGCACAUGGCGAUAGUAAACGAAGCAUGUCGAGCAGUCCACCCAACCCCGAUGGACGUGG
>Tremb_prin4_0252 Tremblaya princeps tmRNA, version 4 (ends unsequenced) {Planococcus} AY313268:1-222
ACGGGGCAAGGGAUGGGGUGCCAUGCCGAGCAGCCCAACGUUAGGGGCACGAAAGGUGCAACGAGUAACAGGUUCGCCAU
GGUGGCUAAUGAUUGCCAGUUCGCGUUAGUCGGAAGAGCAGCGGUGUAGUGCGAAGGUAUACUGAUGGACUAGGCUGACG
GUCAUAGUGCGACUGUAAACAAAGCAUGUUGUGCACCCCCCACACCUCCCUGCUGGACGUGG
>Tremb_prin5_0253 Tremblaya princeps tmRNA, version 5 (ends unsequenced) {Paracoccus} AY313269:1-221
ACGGGGCAAGGGAUGGGGUGCCAUGCCGAGCAGCCCAACGUUAGGGGCACGAAAGGUGCACCAAGAAAUAGGUUCACCAG
GGUGACUAACGACAGCAAGUUCGCGUUGGUCGGAAGAGCAGCGGUAUAGUGCGAAGAUACACUGAAGGACUAGGCUGACG
GGUCAUAGUGCGACUGUAAACAAAGCAUGUUGUGCACCCCACACCUCUCCGCUGGACGUGG
>Tremb_prin6_0254 Tremblaya princeps tmRNA, version 6 (ends unsequenced) {Melanococcus} AY313270:1-221
ACGGGGCAAGGGAUGGGGUGCCAUGCCGAGCAGCCCUACGUUAGGGGCACGAAAGGUGCACCAAGUAAAAGGUUCACCAU
GGUGACUAACGACAGCAAGUUCGCGUUGGUCGGAAGAGCAGCGGUAUAGUGCUAAGAUACACUGAAGGACUAGGCUGACG
GGUCAUAGUGCGACGGUAAACAAAGCAUGUUGUGCACCCCAUCCCUCUCCGCUGGAAGUGG
>Neiss_gono1_0255 Neisseria gonorrhoeae tmRNA, version 1 (ends unsequenced) {ATCC 19424} U68080:22-339
GGGGGUUGCGAAGCAGAUGCGGGCAUACCGGGGUCUCAGAUUCCCGUAAAACACUGAAUUCAAAUAGUCGCAAACGACGA
AACUUACGCUUUAGCCGCUUAAGGCUAGCCGUUGCAGCAGUCGGUCAAUGGGCUGUGUGGCGAAAGCCACCGCAACGUCA
UCUUACAUUGACUGGUUUCCAGCCGGGUUACUUGGCAGGAAAUAAGACUUAAGGUAACUGGUUUCCAAAAGGCCUGUUGG
UCGGCAUGAUGGAAAUAAGAUUUUCAAAUAGACACAACUAAGUAUGUAGAACGCUUUGUAGAGGACUUUCGGACGGGG
>Neiss_gono2_0256 Neisseria gonorrhoeae tmRNA, version 2 {FA 1090} AE004969:862950-863312; NC_002946:862950-863312
GGGGGCGACCUUGGUUUCGACGGGGGUUGCGAAGCAGAUGCGGGCAUACCGGGGUCUCAGAUUCCCGUAAAACACUGAAU
UCAAAUAGUCGCAAACGACGAAACUUACGCUUUAGCCGCUUAAGGCUAGCCGUUGCAGCAGUCGGUCAAUGGGCUGUGUG
GUGAAAGCCACCGCAACGUCAUCUUACAUUGACUGGUUUCCAGCCGGGUUACUUGGCAGGAAAUAAGACUUAAGGUAACU
GGUUUCCAAAAGGCCUGUUGGUCGGCAUGAUGGAAAUAAGAUUUUCAAAUAGACACAACUAAGUAUGUAGAACGCUUUGU
AGAGGACUUUCGGACGGGGGUUCGAUUCCCCCCGCCUCCACCA
>Neiss_lacta_0257 Neisseria lactamica tmRNA
GGGGGCGACCUUGGUUUCGACGGGGGUUGCGAAGCAGAUGCGGGCAUACCGGGGUCUCAGAUUCCCGUAAAACACUGAAU
UCAAAUAGUCGCAAACGACGAAACUUACGCUUUAGCCGCUUAAGGCUAGCCGUUGCAGCAGUCGGUCAAUGGGCUGUGUG
GCGAAAGCCACCGCAACGUCAUCUUACAUUGACUGGUUUCCAGCCGGGUUACUUGGCAGGAAAUAAGACUUAAGGUAACU
GGUUCCCUAAAGGCCUGUCGGUCGGCAUGACGGGGAUAAGAUUCCAAAUAGAUACGACUAAGUAUGUAGAACGCUUUGUA
GAGGACUUUCGGACGGGGGUUCGAUUCCCCCCGCCUCCACCA
>Neiss_meni1_0258 Neisseria meningitidis tmRNA, version 1 {Z2491} AL162755:165198-164836; NC_003116:1166057-1165695
GGGGGCGACCUUGGUUUCGACGGGGGUUGCGAAGCAGAUGCGGGCAUACCGGGGUCUCAGAUUCCCGUAAAACACUGAAU
UCAAAUAGUCGCAAACGACGAAACUUACGCUUUAGCCGCUUAAGGCUAGCCGUUGCAGCAGUCGGUCAAUGGGCUGUGUG
GCGAAAGCCACCGCAACGUCAUCUUACAUUGACUGGUUUCCUGCCGGGUUAUUUGGCAGGAAAUGAGAUUUAAGGUAACU
GGUUUCCAAAAGGCCUGUUGGUCGGCAUGAUGGAAAUAAGAUUUUCAAAUAGACACAACUAAGUAUGUAGAACGCUUUGU
AGAGGACUUUCGGACGGGGGUUCGAUUCCCCCCGCCUCCACCA
>Neiss_meni2_0259 Neisseria meningitidis tmRNA, version 2 {MC58} AE002098:1031164-1030802; AX044031:131126-130764; CS238430:131127-130765; NC_003112:1031164-1030802
GGGGGCGACCUUGGUUUCGACGAGGGUUGCGAAGCAGAUGCGGGCAUACCGGGGUCUCAGAUUCCCGUAAAACACUGAAU
UCAAAUAGUCGCAAACGACGAAACUUACGCUUUAGCCGCUUAAGGCUAGCCGUUGCAGCAGUCGGUCAAUGGGCUGUGUG
GCGAAAGCCACCGCAACGUCAUCUUACAUUGACUGGUUUCCUACCGGGUUACUUGGCAGGAAAUAAGACUUAAGGUAACU
GGUUUCCAAAAGGCCUGUUGGUCGGCAUGAUGGAAAUAAGAUUUUCAAAUAGACACAACUAAGUAUGUAGAACGCUUUGU
AGAGGACUUUCGGACGGGGGUUCGAUUCCCCCCGCCUCCACCA
>Neiss_meni3_0260 Neisseria meningitidis tmRNA, version 3 {FAM18}
GGGGGCGACCUUGGUUUCGACGGGGGUUGCGAAGCAGAUGCGGGCAUACCGGGGUCUCAGAUUCCCGUAAAACACUGAAU
UCAAAUAGUCGCAAACGACGAAACUUACGCUUUAGCCGCUUAAGGCUAGCCGUUGCAGCAGUCGGUCAAUGGGCUGUGUG
GCGAAAGCCACCGCAACGUCAUCUUACAUUGACUGGUUUCCUACCGGGUUACUUGGCAGGAAAUAAGACUUAAGGUAACU
GGUUUCCAAAAGGCCUGUUGGUCGGCAUGAUGGAAAUAAGAUUUUCAAAUAGACACAACUAAGUAUGUAGAACGCUUUGU
AGAGGACUUUCGGACGGGGGUUCGAUUCCCCCCGCCUCCACCA
>Chrbm_viol1_0261 Chromobacterium violaceum tmRNA, version 1 (ends unsequenced) {ATCC 07461}
CGGGGGUUGCGAAGCAGAUGAGGGCAUACCGGGAUUUCAGUCACCCCGUAAAACGCUGAAUUUAUAUAGUCGCAAACGAC
GAAACUUACGCUCUGGCAGCCUAACGGCCGGCCAGACACUACAACGGUUCGCAGAUGGGCCGGGGGCGUCAAAACCCUGU
AGUGUCACUCUACAUCUGCUAGUGCUGUUCCGGGUUACUUGGUUCAGUGCGAAAUAAUAGGUAACUCGCCAAAGUCCAGC
CUGUCCGUCGGCGUGGCAGAGGUUAAAUCCAAAUGACACGACUAAGUAUGUAGAACUCACUGUAGAGGACUUUCGGACGC
GGGUUCAACUCCC
>Chrbm_viol2_0262 Chromobacterium violaceum tmRNA, version 2 {ATCC 12472} AE016825:2186992-2187356; NC_005085:2186992-2187356
GGGGGCGACCUGGUUUCGACGGGGGUUGCGAAGCAGAUGAGGGCAUACCGGGAUUUCAGUCACCCCGUAAAACGCUGAAU
UUAUAUAGUCGCAAACGACGAAACUUACGCUCUGGCAGCCUAACGGCCGGCCAGACACUACAACGGUUCGCAGAUGGGCC
GGGGGCGUCAAAACCCUGUAGUGUCACUCUACAUCUGCUAGUGCUGUUCCGGGUUACUUGGUUCAGUGCGAAAUAAUAGG
UAACUCGCCAAAGUCCAGCCUGUCCGUCGGCGUGGCGGAGGUUAAAUCCAAAUGACACGACUAAGUAUGUAGAACUCACU
GUAGAGGACUUUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Uncultu_U02_0263 Uncultured leafU02 tmRNA (ends unsequenced)
GUGGAUUGCAAAGCUAUCGAGGGCGUGUCGAGGAUCAGUUACCUCGUAAAUCCAUCUGAAAAACAGUAAACGCAAACGAC
GAACAGUUUGCUCUAGCAGCUUAAUCGCUCGCUAGAUCUCACACCAGCUUGCCGAUGGGCUGGGCAGGGUCAAACCUGCA
GUGGGAUCAUCGCACAUCGGAUCGCUGCGUGCAGGGUUGCGAUGCAAGUGGCUAAAUCAAGCGACUCGCGGUUGUCGUAG
GGUGUCCCCUCCCGACAAUGAUCGUUAAAACCAAAUAAGACGACUACACACGUAGAACUUGUAGUGGAGGAUUUGCGGAC
GUGG
>Nisom_europ_0264 Nitrosomonas europaea tmRNA BX321865:39135-38776; NC_004757:2785135-2784776
GGGGGCGAUCCGGUUUCGACGUGGGUUGCAAAGCAGCGCAGGGCAUACCGAGGUUCAGUACCCUCGUAAAACAGCUGAAA
AAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCCGCUUAAUCCGGCUAAACUCCACACCGGUGGGCCUCAACGCCGG
GUCUGGCAACAGACAGUGGAGUCAUUAACGAGGAUCGCGUUUUGCAGGGUUACUUUGCAGAGCGCUAAAAAAUAGGUAAC
UCGCCUGUCAUCAGCCUGCCGGUUGGCGGAUGCCAGGUCAAAUUAAAUAACAUGGCUAAGUAUGUAGAACUGUCUGUAGA
GGACUUGCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Nisom_cryot_0265 Nitrosomonas cryotolerans tmRNA (ends unsequenced)
CGUGGGUUGCAAAGCAGCGCAGGGCAUACCGAGGACCAGAAUACCUCGUAAAUACAUCUGGAAAAAAAUAGUCGCAAACG
ACGAAAACUACGCUUUAGCCGCUUAAUACGGCUAGCCUCUGCACCGAUGGGCCUUAACGUCGGGUCUGGCAACAGACAGC
AGAGUCAUUAGCAAGGAUCGCGUUCUGUAGGGUCACUUUACAGAACGUUAAACAAUAGGUGACUCGCCUGCCAUCAGCCC
GCCAGCUGGCGGUUGUCAGGUUAAAUUAAAGAGCAUGGCUAAGUAUGUAGAACUGUCUGUAGAGGACUUGCGGACGCGGG
UUCAACUCCC
>Nissp_multf_0605 Nitrosospira multiformis tmRNA CP000103:2481035-2480674; NC_007614:2481035-2480674
GGGGGCGACUUGGCUUCGACGUGGGUUGCAAAACAGAGCAGGGCAUACCGAGGACCAGUUACCUCGUAAAUACAUCUGGA
AACCAAUAGUCGCAAACGACGAAAACUACGCUCUAGCCGCUUAAAUCCGGCUGGACUCCGCACCGGUGGGCCUCAACGCC
GGGUCUGGCAACAGACAGCGGAGCCAUUAACGAGGAUCGCGCCCGGUAGGGUUACUUUACAGGGCGUUAAACAAUAGGUG
ACUCGCCUGCCAUCAGUCCGCCGGUUGACGGAUGCCAGGUUAAAUUAAAAAACAUGGCUAAGUAUGUAGAACUGCCUGUA
GAGGGCUUGCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Uncultu_U04_0266 Uncultured leafU04 tmRNA (ends unsequenced)
GUGGGUUGCAAAGCAGUGCAGGGCAUACCGAGGACUAGUCACCUCGUAAAUCCACUGGAACAAGUUAUAGUCGCAAACGA
CGAAACUUACGCUCUAGCCGCUUAAUCCCGGCUGGACGCUGCACCGGAGGGCCUCUCGGCCGGGCGGAGCAAUCCGCAGC
AGCGUCAUAUAGAGAGGAUCGU
>Mebcl_glyco_0267 Methylobacillus glycogenes tmRNA (ends unsequenced)
CGGGGGUUGCAAAGCAGCGCAGGGCAUACCGAGGCCUAGUCACCUCGUAAAUAAACUAGAACAAGUAUAGUCGCAAACGA
CGAAACUUACGCUCUAGCCGCUUAAUCCCGGCUGGACGCUGCACCGAAGGGCCUCUCGGUCGGGUGGGGUAACCCACAGC
AGCGUCAUUAAGAGAGGAUCGUGCGAUAUUGGGUUACUUAAUAUCGUAUUAAAUCCAAGGUAACUCGCCUGCUGUUUGCU
UGCUCGUUGGUGAGCAUCAGGUUAAAUCAAACAACACAGCUAAGUAUGUAGAACUGUCUGUGGAGGGCUUGCGGACGGGG
GUUCGAUUCCC
>Mebcl_flage_0268 Methylobacillus flagellatus tmRNA AADX02000001:163988-163628; NZ_AADX02000001:163988-163628
GGGGCCGACCAGGUUUCGACGUGGGUUGCAAAGCAGCGCAGGGCAUACCGAGGCCUAGUCACCUCGUAAAUAAACUAGAA
CAAGUAUAGUCGCAAACGACGAAACUUACGCUCUAGCCGCUUAAUCCCGGCUGGACGCUGCACCGGAAGGCCUCUCGGCC
GGGCGGGUAACCGCAGCAGCGUCAUUUAGAGAGGAUCGUGUUGUAUUGGGUUACUUAAUACAACAUUAAAUCCAAGGUAA
CUCGCCUGCUGUUCGCUUGCUCGUUGGUGGGCAUCAGGUUAAAUCAAACAACACAGCUAAGUAUGUAGAACUGUCUGUGG
AGGGCUUGCGGACGGGGGUUCGAUUCCCCCCGGCUCCACCA
>Uncul_farm7_0690 Uncultured farm7 tmRNA AAFX01088509:935-572
GGGGGUGACCCCGGUUUCGACGUGGGUUACAAAGCAGUGCAGGGGCAUACCGAGGACCAGUCACCUCGUAAAACAACUGG
AAAAAGUAUAGUCGCAAACGACGAAACUUACGCUCUAGCCGCUUAAUACCGGCUGGACGCUGCACCGAAGGGCCUUCGGU
CGGGCAGGGCAACCUGCAGCAGCGUCAUAAAGAGAGGAUCGUGCCGUACCGGGUUACUUGAUACAGCAUUAAAUCCAAGG
UAACUCGCCUUGCCUCAGCCUGCCGGUUGACGGUUGCAAGGUCAAAUCAAAUAACCAGGCUAAGUAUGUAGAACUGUCUG
UAGAGGGCUUGCGGACGGGGGUUCGAUUCCCCCCACCUCCACCA
>Uncul_poln1_0634 Uncultured pollen1 tmRNA (3-prime end unsequenced) CB818296:1-170
GGGGACGACCUGGUUUCGACGUGGGUUGCAAAGCAGCGCAGGGCAUACCGAGGGCGGGCUACCUCGUAAAUACAACCUGA
AAAAACUUAACUGCAAACGAUAACUCGUACGCACUGGCAGCUUAAUUGCUGUUAGCUCUAGAACACCUCGUCCCUGGGGU
GGGCCGUUAA
>Azoarc_BH72_0269 Azoarcus BH72 tmRNA
GGGGCCGACCUGGCUUCGACGUGGGUCGCGAAGCAGUGCAGUGCAUACCGAGGACCAGUCACCUCGUAAAUCCAUCUGGG
AAACUACAAACGCCAACGACGAGCGUUUCGCUCUCGCCGCUUAAUCCCGGCGGGCGCUGCACCGGCAGGUCUCUGGGCCG
GGUGGUUCCAGCGUAAGCUGGGCCGCUGCAGUGUCAUUUACAGAGAAUCGCGAGCAGGGCCGGGUUACUUGGCUCUGUAG
CUAAAGGUAAGGUAACUCGCUGAUGACCGGCCUGCCGACCGGCUAAGUCAGAGGCUAAAUCCAAAUAGGUCGGCUAAGUA
UGUAGAGCUGUCUGUAGAGGGCUUGCGGACGGGGGUUCGAUUCCCCCCGGCUCCACCA
>Azoarc_EbN1_0270 Azoarcus EbN1 pre-tmRNA (precursor permuted) CR555306:77167-77443; NC_006513:77167-77443
AUGGUUGUAAUUCCGGCAACCCGGAGACGUUCUGGACGCGGGUUCGAUUCCCGCCACCUCCACagugggcauucucaaga
guguucaguguGGGGGUGCACCGGUUUCGACAGGGCGGGCAAUGGUGAGCAGGCAACCCGAGAGGCGACGGACGUAAUCC
GCGCAAAUCCACAAACGCCAACGAUGAGCGUUUCGCUGUAGCCGCUUAAGGCAACAGCCGGGGCCGCCUGAGCCCUGUUA
CCAAAGACGGCUGGCGGGGGCUUCGGCCCCCGCUUCA
>Decmo_aroma_0271 Dechloromonas aromatica pre-tmRNA (precursor permuted) CP000089:4390206-4389925; NC_007298:4390206-4389925
AUGGUUGUAAUUCCGGCAAUCUGGAGGCGUUCUGGACAGGGGUUCGAUUCCCCUCACCUCCACCcaagggcauuccgcug
aguguuuuuggauGGGGGUGUACUGGUCUCGACAGGGCGGACAAAGGUGCGCAGGCAACUCGUCAGGCGAUCGACGUUAA
UGAAGCAAAUCCAUAAUUGCCAAUGAUGAGCAAUUCGCUAUUGCCGCCUAAAAACGGUUAGCCGGGGCUGCUAGAGCCUU
GUUACCAAAGAUAGCCGGCGGGGACUUCGGUCCCCGUCGUCA
>Decmo_agita_0272 Dechloromonas agitata pre-tmRNA (ends unsequenced) (precursor permuted) AY911531:1-237
GGAGGCGUUCUGGACAGGGGUUCGAUUCCCCUCACCUCCACCcaagggcauucggcugaguguguuugguuGGGGGUGUA
CUGGCUUCGACAGGGCGGGCAAAGGUGCGCAGGCAACCCGAGAGGUGACGGACGUAAUCCGCACAAAUCCAUAAUUGCCA
AUGAUGAGCAAUUCGCUAUCGCCGCCUAAAAACGGCUAGCUGGGGCCGCUGAAGCCUUAUUACCCAAGACAGCCGGC
>Azosp_oryza_0273 Azospira oryzae pre-tmRNA (ends unsequenced) (precursor permuted) AY911532:1-232
GGAGGCGUUCUGGACGCGGGUUCGAUUCCCGCCACCUCCACCuaagaguuucggagaguucuuagguGGGGGUGUACUGG
CUUCGACAGGGCGGGCAAAGGUGCGCAGGCAACUCGUCAGGCGAUCGACGUUAAUGAAGCAAAUCUCCAAACGCCAACGA
UGAGCGUUUCGCAAUCGCCGCUUAAGGCUUUUGCCGAGGCUGCUUGAGCCUUGUUACCAAAGAAAAGCCGGU
>Thibl_denit_0274 Thiobacillus denitrificans tmRNA CP000116:1005311-1004945; NC_007404:1005311-1004945
GGGGCCGACCUGGCUUCGACGUGGGUCGCAAAGCAGCGUAGGGCAUACCGAGGGUCAGAGCACCUCGUAAAUCCAACUGA
AAAACUUUAGUCGCAAACGACGAAAACUACGCCCUGGCCGCUUAAGGUCCAGGACUCACACUAGCCUGUUCAUGGGCUAG
GCCGGGUCAAACCGGCAGUGAGUUAAUUCACAUGAAAUCGCGCUUGUCCGGGUCGCUUGGGCAGGUGCUAAAUCCAAGGC
GGCUCGGCGAAAUCCAGCCUGUUCGGCGGGCGUGAUGGAGCUUAAAGCUUAAAAACACCGGACUAAGUAUGUAGAACUGC
CUGUAGAGGGCUUGCGGACGCGGGUUCGAUUCCCGCCGGCUCCACCA
>Comam_testo_0275 Comamonas testosteroni tmRNA (3-prime end unsequenced)
GGGGCCGAUUCUGGAUUCGACGUGGGUUCGGGACCGGUGCGGUGCAUGUCGAGCUUGAGUGACGCUCGUAAAUCUCCAUU
CAAAAAACUAACUGCAAACGACGAACGUUUCGCACUCGCCGCUUAAUCCGGUGAGCCUUGCAACAGCACGCUAGUGGGCU
GGGCAAGGGGGUAGCAAUACCUCCCGGCUGCAAGGGAAUUUUCAUUAGCUGGCUGGAUACCGGGCUUCUUGGUAUUUGGC
GAGAUUUUAGGAAGCUGGCUACCCAAGCAGCGUGUGCCUGCGGGGUUUGGGUGGUGAGAUUUAAAACAGAGCACUAAACA
UGUAGAUCUGUCCGGCGAAGGCUUACGGACGCGGGUUCAAUUCCCGCCGGCUCCA
>Uncul_srat1_0675 Uncultured stronglyoides1 tmRNA CZ539665:130-507
GGGGCUGUCCUGGUUUCGACGUGGGUUCGGGACCGGUGUGGUGCAUGUCGAGCUUGAGUGACGCUCGUAAAUCUCCAUUC
AAAAAACUAACUGCAAACGACGAACGUUUCGCACUCGCCGCUUAAAUCCGGUGAGCCUUGCAACAGCACGCUGAUGGGCU
GGGCAAGGGGGUAGCAAUACCUCCCGGCUGCAAGGGAAUUUACAUCAGCUGGCUGCGUGCUGGGCUUCUUAGUACGUGGC
AAGAUCCAAGGAAGCUGGCAUCCCGGGUAGCGUGCGCCUGCGCGACUUGGGAGGCGAGACUCAAAACAGAACGCUAAACA
UGUAGAUCUGCCCGGCGAAGGCUUGCGGACGCGGGUUCAAUUCCCGCCAGCUCCACCA
>Uncul_rice2_0276 Uncultured rice2 tmRNA AAAA02043629:984-1362
GGGGCUGCCCUGGUUUCGACGUGGGUUCGGAAUCGGUGUGGUGCAUGUCGAGCUUGAGUGGCGCUCGUAAAUCUGCAUUC
AACAAACCAACUGCAAACGACGAACGUUUCGCACUCGCCGCUUAAACACCGGUGAGCCUUGCAACAGCACGCUGACGGGC
UGGGCAAGGGGGCCGCAAGGCCUCCCGGCUGCAAGGUUAUUCACGUCAGCUGGCCUCCUGCCGGGUACCUUGGCAUGGGG
CGAGAUCCAAGGGUGCUGGCCUUCCUUGCAGCGUGCGACUGCGCGGCGUGGAAGGUGAGAUCCAAAACAGACCGCUAAAC
AUGUAGAUCUGCCCGAAGAAGGCUUGCGGACGCGGGUUCAAUUCCCGCCAGCUCCACCA
>Uncul_aede1_0635 Uncultured aedes1 tmRNA AAGE01398527:265-643
GGGGCUGCCCUGGUUUCGACGUGGGUUCGGAAUCGGCGUGGUGCAUGUCGAGCUUGAUUGGCGCUCGUAAAUCUGCAUUC
AAAAAACCAACUGCAAACGACGAACGUUUCGCACUCGCCGCUUAAACACCGGUGAGCCUUGCAACAGCACGCUGAUGGGC
UGGGCAAGGGGGCCGCAAGGCUUCCAGGCUGCAAGGGAAUUCACAUCAGCUGGUCUGGCGCCGGGUACCUUGGCGUUGGG
CGAGAUCCAAGGGUGCUGGCAUUCGGCAUAGCGUGCGCCUGCGCGAUGACGGAAGCGAGAUUCAAAACAGAACGCUAAAC
AUGUAGAUCUGCCCGAUGAAGGCUUGCGGACGCGGGUUCAAUUCCCGCCAGCUCCACCA
>Polmo_JS666_0277 Polaromonas JS666 tmRNA AAFQ02000006:280417-280031; NZ_AAFQ02000006:280417-280031
GGGGCUGCACUGGUUUCGACGCGGGUACGGACGCGCAGUGGGGCAUGCCGAGCUUAGUGUGCUCGUAAAACUGACUAAAA
CAAACUAACUGCAAACGACGAACGUUUCGCACUCGCUGCUUAAUAACCAGUGAGCCCUACAACAGCAGGCCGAUGGGCUG
GGCAAGGGGUCUUUAGCGCAAGUUGAAGGCUCCCGGCUGUAGGGUCAUACACAUCGGCUGGCCUGGUACCGGGCACCUUG
GUAUCAGGCGAGACAAUAGGAUGCUGGCAACCUGUAUAGCGUGCUGCUGCGCGAUACGGGAAGUGAGACUCAAAUCAGAC
GGCUAAGCAUGUAGAACUACGCGAAGAAGGCUUGCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Varvx_parad_0278 Variovorax paradoxus tmRNA (ends unsequenced)
CGUGGGUUCGGAGUCGCAGCGGGGCAUGUCGAGCUGAAUGCGCUCGUAAAACAGAUUCAAACAAACUAACUGCAAACGAC
GAACGUUUCGCACUCGCUGCUUAAUUGCCAGUGAGCCUUGCAACAGUUGGCCGAUGGGCUGGGCAAGGGGGUCUGGAGCA
AUCCUGACCUCCCGGCUGCAAGGAUAACUACAUGGGCUGGCUCCGAUCCGGGUACCUUGGGUCGGGGCGAGAAAAUAGGG
UACUGGCGUCCGGUUUAGCGUGUGACUGCGCGACUCCGGAAGUGAGACUCAAAACAGAUCACUAAACAUGUAGAACUGCG
CGAUGAAGGCUUGCGGACGGGGGUUCAACUCCC
>Hydro_palle_0279 Hydrogenophaga palleronii tmRNA (ends unsequenced)
CGUGGGUUCGGACGCGCAGCAGGGCAUGUCGAGGUUCUGUCACCUCGUAAAUCAGCAGAAAAAAACCAACUGCAAACGAC
GAACGUUUCGCACUCGCCGCUUAAACACCGGUGAGCCUUGCAACAGCAGGCCGAUGGGCUGGGCAAGGGGGUCGCAAGAC
CUCCCGGCUGCAAGGUAAUUUACAUCGGCUGGUUCUGCGUCGGGCACCUUGGCGCAGGAUGAGAUUCAAGGAUGCUGGCU
UCCCGUUUAGCGUGCCACUGCGCGACUCGGGCGGUGAGACCCAAAUCAGACGGCUACACAUGUAGAACUGCUCGAAAAAG
GCUUGCGGACGGGGGUUCAACUCCC
>Rubri_gelat_0280 Rubrivivax gelatinosus tmRNA AAEM01000001:453206-453577; NZ_AAEM01000001:453206-453577
GGGGCCGACCUGGUUUCGACGUGGGUGCGGAAUUGGAGUGGUGCAUGCCGAGCAUCAGUGAGCUCGUAAAUCCAGCUGAA
ACAAACCAACUGCGAACGACGAACGUUUCGCCCUCGCCGCUUAAACACCGGUGAGCGUCUCAACGGCAGGCCGAUGGGCC
GGGCCCAAGCCGCAAGGUGGAAGGCUGAGACGUCAUGCACAUCGGCUGGUUGCUCGUCGGGUCACUCGGCGUUCAACGAG
ACUCAGUGACUGGCGUUGUCCGUAGCGUGCUUCUGCGCGACGGCGGCGUGAGACUCAAAUCAGACAGCUAAGCAUGUAGA
UCUACCUGAGGAUGGCUUGCGGACGGGGGUUCGAUUCCCCCCGGCUCCACCA
>Ralst_picke_0281 Ralstonia pickettii tmRNA (ends unsequenced) CN027819:308-9
CGGGGGUUGCGAAGCAGCGGAGGGCAUACCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAUGCAAUAACUGCUAACGAC
GAACGUUACGCACUGGCAGCCUAAGGGCCGCCGUCCUCGCACUGGCUCGCUGACGGGCUAGGGUCGCAAGACCAGCGAGG
UCAUUUACGUCAGAUAAGCUUUAGGUGAGUCACGGGCCUAGAGACGAAAACUUAGUGAAUCGCCGUCGUAGAGCGUGUUC
GUCCGCGAUGCGGCGGUUAAAUCAAAUGACAGAACUAAGUAUGUAGAACUCUCUGUGGAGGGCUUGCGGACGCGGGUUCG
AUUCCC
>Ralst_solan_0282 Ralstonia solanacearum tmRNA AL646061:130228-129869; NC_003295:943228-942869
GGGGCCGACCUGGUUUCGACGUGGGUUGCGAAGCAGUAGCGGGCAUACCGAGGACCCGUCACCUCGUUAAUCAAUGGGAA
CGCAAUAACUGCUAACGACAACCGUUACCAGCUGGCCGCUUAAUUGCGCGCCGUCCUCGCACUAGCUUGCCGAUAGGCUA
GGGCCGCAAGGCCACGCGAGGUCAUUCAUAUCGGAUCGCUUCGGCCGGUGUCACGACGGCCGGGGUUAACUCCAAGUGAC
UCGUCGUCGCGCAGCGUGUUCGUCCGCGUCGCGCCGGUUAAAUCAAAUGACUGAACUAAGUAUGUAGAACGCUCUGUAGA
GGACUUGCGGACGCGGGUUCGAUUCCCGCCGGCUCCACCA
>Cupri_necat_0283 Cupriavidus necator tmRNA (5-prime end unsequenced) X51902:357-28
CGUGGGUUACAAAGCAGUGGAGGGCAUACCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAUGCAAUAACUGCUAACGAC
GAACGUUACGCACUGGCCGCUUAAUUGCGGCCGUCCUCGCACUGGCUCGCUGACGGGCUAGGGUCGCAAGACCACGCGAG
GUCAUUUACGUCAGAUAAGCUCCGGAAGGGUCACGAAGCCGGGGACGAAAACCUAGUGACUCGCCGUCGUAGAGCGUGUU
CGUCCGCGAUGCGCCGGUUAAAUCAAAUGACAGAACUAAGUAUGUAGAACUCUCUGUGGAGGGCUUACGGACGCGGGUUC
GAUUCCCGCCGGCUCCACCA
>Uncul_zebu1_0636 Uncultured zebu1 tmRNA (3-prime end unsequenced) CB042349:95-1
GGGGCCGACCUGGUUUCGACGUGGGUUGCGAAGCAGCGGAGGGCAUACCGAGGACCCGUCACCUCGUUAAUCAAUGGGAA
UGCAAUAACUGCUAA
>Ralst_eutro_0284 Ralstonia eutropha tmRNA CP000090:2828530-2828889; NC_007347:2828530-2828889
GGGGCCGACCUGGUUUCGACGUGGGUUGCGAAGCAGUGGAGGGCAUACCGAGGACCCGUCACCUCGUUAAUCAAUGGGAA
UGCAAUAACUGCUAACGACGAACGUUACGCACUGGCAGCCUAAGGGCCGCCGUCCUCGCACUGGCUCGCUGACGGGCUAG
GGUUCGCAAGAACCAGCGAGGUCAUUUACGUCAGAUAAGCCCCGUCGGUGUCACGACUGCGGGGACGAAAACCAAGUGAC
UCGCCGUCGUAGAGCGUGUUCGUCCGCGAUGCGGCGGUUAAAUCAAAUGACAGAACUAAGUAUGUAGAACUCUCUGUGGA
GGGCUUGCGGACGCGGGUUCGAUUCCCGCCGGCUCCACCA
>Ralst_metal_0285 Ralstonia metallidurans tmRNA AAAI03000002:213303-212944; NZ_AAAI03000002:213303-212944
GGGGCCGACCUGGUUUCGACGUGGGUUACAAAGCAGUGGAGGGCAUACCGAGGACCCGUCACCUCGUUAAUCAAUGGGAA
UGCAAUAACUGCUAACGACGAACGUUACGCACUGGCAGCCUAAGGGCCGCCGUCCUCGCACUGGCUCGCUGACGGGCUAG
GGUUCGCAAGAACCAGCGAGGUCAUUUACGUCAGAUAAGCUUCGGGAGUGUCACGGGCCCGAGGACGAAAACCUAGUGAC
UCGCCGUCGUAGAGCGUGUUCGUCCGCGAUGCGCCGGUUAAAUCAAAUGACAGAACUAAGUAUGUAGAACUCUCUGUGGA
GGGCUUGCGGACGCGGGUUCGAUUCCCGCCGGCUCCACCA
>Burkh_thail_0286 Burkholderia thailandensis tmRNA CP000086:1835164-1834795; NC_007651:1835164-1834795
GGGGGCGACCUGGUUUCGACAGGGGUUGUGAAGCGGCUAGGGCAUGUCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAA
AACGUAACUGCAAACGACGAUACGUUCGCACUGGCAGCCUAAGGGCCGCCGUCCUCUGCCUAGUUCACUGACGGGCUAGU
GUCGCAAGACCGGUAGCAAUACCGACAGAGGUCAUAUACGUCAGUUAAGCCUGUCCGGCGUCACGACGGCCAGGUCGAAA
AUUGAGUGAAUCGCCGUAACGGAGCGUGUUCGUCCGCGACGUCACGGUUAAAUCAAACGACAGAACUAAACAUGUAGAAC
UGGUCGUGGACCGCUUCUGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Burkh_pseud_0287 Burkholderia pseudomallei tmRNA BX571965:3041943-3042312; NC_006350:3041943-3042312; AAHS01000020:44190-43821; NZ_AAHS01000020:44190-43821; CP000124:3310659-3311028; NC_007434:3310659-3311028; AAHV01000013:70396-70765; NZ_AAHV01000013:70396-70765; AAHU01000030:44325-43956; NZ_AAHU01000030:44325-43956; AAHR01000015:46117-45748; NZ_AAHR01000015:46117-45748; AAMM01000022:15548-15179; NZ_AAMM01000022:15548-15179; AAMA01000042:15521-15152; NZ_AAMA01000042:15521-15152; AAMB01000001:54094-54463; NZ_AAMB01000001:54094-54463
GGGGGCGACCUGGUUUCGACAGGGGUUGUGAAGCGGCUAGGGCAUGUCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAA
AACGUAACUGCAAACGACGAUACGUUCGCACUGGCAGCCUAAGGGCCGCCGUCCUCUGCCUAGUUCACUGACGGGCUAGU
GUCGCAAGACCGGUAGCAAUACCGACAGAGGUCAUAUACGUCAGUUAAGCCUGUCCGGCGUCACGACGGACAGGUCGAAA
AUCAAGUGAAUCGCCGUAACGGAGCGUGUUCGUCCGCGACGUCACGGUUAAAUCAAAUGACAGAACUAAACAUGUAGAAC
UGGUCGUGGACCGCUUCUGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Burkh_malle_0288 Burkholderia mallei tmRNA CP000010:464712-465081; NC_006348:464712-465081; AAHQ02000001:595803-595434; NZ_AAHQ02000001:595803-595434; AAHP01000036:45996-45627; NZ_AAHP01000036:45996-45627; AAHO01000009:86652-87021; NZ_AAHO01000009:86652-87021; AAHN01000009:69557-69188; NZ_AAHN01000009:69557-69188; AAHM02000001:978037-978406; NZ_AAHM02000001:978037-978406; AAIR02000009:55510-55879; NZ_AAIR02000009:55510-55879; AAIQ02000010:86667-87036; NZ_AAIQ02000010:86667-87036
GGGGGCGACCUGGUUUCGACAGGGGUUGUGAAGCGGCUAGGGCAUGUCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAA
AACGUAACUGCAAACGACGAUACGUUCGCACUGGCAGCCUAAGGGCCGCCGUCCUCUGCCUAGUUCACUGACGGGCUAGU
GUCGCAAGACCGGUAGCAAUACCGACAGAGGUCAUAUACGUCAGUUAAGCCUGUCCGGCGUCACGACGGACAGGUCGAAA
AUCAAGUGAAUCGCCGUAACGGAGCGUGUUCGUCCGCGACGUCACGGUUAAAUCAAAUGACAGAACUAAACAUGUAGAAC
UGGUCGUGGACCGCUUCUGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Burkh_fungo_0289 Burkholderia fungorum tmRNA AAAJ03000006:84898-85267; NZ_AAAJ03000006:84898-85267
GGGGGCGACCUGGUUUCGACAGGGGUUGCGAAGCGGCUAGGGCAUGUCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAA
AACGUAACUGCAAACGACGAUACGUUCGCACUGGCAGCCUAAGGGCCGCCGUCCUCUGCCUAGUUUACUGACGGGCUAGA
GUCGCAAGACCGGUAGCAAUACCGACAGAGGUCAUAUACGUCAGUUAAGCCUUGGUGGUGUCACGACAUCCGGGUCGAAA
AUCUAGUGAAUCGCCGUAGUGCAGCGUGUUCGUCCGCGUCGCUACGGUUAAAUCAAAUGACAGAACUAAACAUGUAGAAC
UGGUCGUAGAGUGCUUCUGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Burkh_cenoc_0290 Burkholderia cenocepacia tmRNA
GGGGGCGACCUGGUUUCGACAGGGGUUGUGAAGCGGCUAGGGCAUGUCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAA
AUCGUAACUGCAAACGACGAUACGUUCGCACUGGCAGCCUAAGGGCCGCCGUCCUCUGCCUAGUUCACUGACGGGCUAGU
GUCGCAAGACCGGUAGCAAUACCGACAGAGGUCAUUUACGUCAGUUAAGCCCUGUCGGCGUCGCGACGCCAGGGUCGAAA
AUCUAGCGAAUCGCCGUAGUGCAGCGUGUUCGUCCGCGUCGCUGCGGUUAAAUCAAAAGACUGGACUAAACAUGUAGAAC
UAGUCGUGGAGCGCUUCUGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Burkh_vietn_0291 Burkholderia vietnamiensis tmRNA AAEH02000028:61192-61561; NZ_AAEH02000028:61192-61561
GGGGGCGACCUGGUUUCGACAGGGGUUGUGAAGCGGCUAGGGCAUGUCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAA
AACGUAACUGCAAACGACGAUACGUUCGCACUGGCAGCCUAACGGCCGCCGUCCUCUGCCUAGUUCACUGACGGGCUAGU
GUCGCAAGACCGGUAGCAAUACCGACAGAGGUCAUAUACGUCAGUUAAGCCUUGGCGGCGUCGCGACGUCCGGGUCGAAA
ACUUAGCGAAUCGCCGUAGUGCAGCGUGUUCGUCCGCGUCGCUGCGGUUAAAUCAAAUGACUGAACUAAACAUGUAGAAC
UAGUCGUGGAGCGCUUCUGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Burkh_sp383_0292 Burkholderia sp. 383 tmRNA CP000151:1084016-1083647; NC_007510:1084016-1083647; AACY01015269:166872-166503
GGGGGCGACCUGGUUUCGACAGGGGUUGUGAAGCGGCUAGGGCAUGUCGAGGACCCGUCACCUCGUUAAUCAAUGGGAAA
AUCGUAACUGCAAACGACGAUACGUUCGCACUGGCAGCCUAACGGCCGCCGUCCUCUGCCUAGUUCACUGACGGGCUAGU
GUCGCAAGACCGGUAGCAAUACCGCCAGAGGUCAUUUACGUCAGUUAAGCCCUGUCGGCGUCGCGACGCCAGGGUCGAAA
ACCUAGCGAAUCGCCGUAGUGCAGCGUGUUCGUCCGCGUCGCUGCGGUUAAAUCAAAUGACUGAACUAAACAUGUAGAAC
UAGUCGUGGAGCGCUUCUGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Alcal_visco_0293 Alcaligenes viscolactis tmRNA (ends unsequenced) AY911519:1-345
GUGGGUCGCGAAACAACUCAGGGCAUGCCGAGCACCAGUACGCUCGUUAAACCACUGGAACACUACAAACGCCAACGACG
AGCGUUUCGCUCUCGCCGCUUAAGCGGUGAGCCGCUGCACUGAUCUGUCCUUGGGUCAGGCGGAGGAAGGCAACUUCCCA
GGGGGGCAACCCUCGAACCGCAGCAGCGACAUUCACAAGGAAUCGGUUUGAACUGGGGUCACACGGUUCAAAUUUAAAUU
ACGUGAAUCGCUCUGGUCCGGCCUGUCGGUUGGCUAAGUCCAGGGUUAAAACCAAAUAGAUCGACUACGCAUGUAGAACU
GGUUGCGGAGGGCUUGCGGACGGGG
>Uncul_root1_0637 Uncultured root1 tmRNA (3-prime end unsequenced) CA305493:282-47; CK909807:280-52; CA305448:21-250X; CA305381:18-213X; CA305358:18-247X; BQ789860:278-50X; BI416931:321-119; BI416775:18-246; BI416525:18-246X
GGGGCCGAUCCGGAUUCGACGUGGGUCGCGAAACAGUGCAGGGCAUGUCGAGCACCAGUACGCUCGUUAAACCACUGGAA
ACACUACAAACGCCAACGACGAGCGUUUCGCUCUCGCCGCUUAAGCGGUGAGCCGUAGCACUGAUCUGUCUUUGGGUCAG
GUGGGGUCAAACUCACAGCUACGACACUUACAAAGAAUCGGGAUCUAGCCGGGUCACACGCGUUAGGCCUUAAAAAGAAG
UGAAUCGCUGAGGGCCGGCCUGUCGGUUGGCUAAGCCCGAGGUUAA
>Alcal_faeca_0294 Alcaligenes faecalis tmRNA (ends unsequenced)
CGGGGGUCAAGAAGCAGCACAGGGCGUGUCGAGCACCAGUACGCUCGUAAAUCCACUGGAAAACUAUAAACGCCAACGAC
GAGCGUUUCGCUCUAGCCGCUUAAGGCUGGGCCACUGCACUAAUUUGUCUUUGGGUUAGGUAGGGCAACCUACAGCAGUG
UUAUUUACAAAGAAUCGAAUCGGUCUGCGCCACGAAGUCCGGUUCUAAAACUUAGUGGAUCGCCAAGGAAAGGCCUGUCA
AUUGGCAUAGUCCAAGGUUAAAACUUAAAAUUAAUUGACUACACAUGUAGAACUGUCUGUGGACGGCUUGCGGACGGGGG
UUCGAUUCCC
>Uncul_humn2_0644 Uncultured human2 pre-tmRNA (5-prime end unsequenced) AW835368:144-6
UUUAAAUUACGUGAAUCGCUCUGGUCCGGCCUGUCGGUUGGCUAAGUCCAUGGGUUAAAACCUAAAUAAAUCGACUACGC
AUGUAGAACUGGUUGCGGAGGGCUUGCGGACGGGGGUUCAAUUCCCCCCGGCUCCACaa
>Borde_pertu_0295 Bordetella pertussis tmRNA BX640413:282336-281950; NC_002929:976766-976380
GGGGCCGAUCCGGAUUCGACGUGGGUCAUGAAACAGCUCAGGGCAUGCCGAGCACCAGUAAGCUCGUUAAUCCACUGGAA
CACUACAAACGCCAACGACGAGCGUUUCGCUCUCGCCGCUUAAGCGGUGAGCCGCUGCACUGAUCUGUCCUUGGGUCAGG
CGGGGGAAGGCAACUUCCCAGGGGGCAACCCCGAACCGCAGCAGCGACAUUCACAAGGAAUCGGCCACCGCUGGGGUCAC
ACGGCGUUGGUUUAAAUUACGUGAAUCGCCCUGGUCCGGCCCGUCGAUCGGCUAAGUCCAGGGUUAAAUCCAAAUAGAUC
GACUAAGCAUGUAGAACUGGUUGCGGAGGGCUUGCGGACGGGGGUUCAAUUCCCCCCGGCUCCACCA
>Borde_parap_0296 Bordetella parapertussis tmRNA BX640432:247325-247711; NC_002928:3379146-3379532
GGGGCCGAUCCGGAUUCGACGUGGGUCAUGAAACAGCUCAGGGCAUGCCGAGCACCAGUAAGCUCGUUAAUCCACUGGAA
CACUACAAACGCCAACGACGAGCGUUUCGCUCUCGCCGCUUAAGCGGUGAGCCGCUGCACUGAUCUGUCCUUGGGUCAGG
CGGGGGAAGGCAACUUCCCAGGGGGCAACCCCGAACCGCAGCAGCGACAUUCACAAGGAAUCGGCCACCGCUGGGGUCAC
ACGGCGUUGGUUUAAAUUACGUGAAUCGCCCUGGUCCGGCCCGUCGAUCGGCUAAGUCCAGGGUUAAAUCCAAAUAGAUC
GACUAAGCAUGUAGAACUGGUUGCGGAGGGCUUGCGGACGGGGGUUCAAUUCCCCCCGGCUCCACCA
>Borde_bronc_0297 Bordetella bronchiseptica tmRNA BX640447:241865-242251; NC_002927:3723496-3723882
GGGGCCGAUCCGGAUUCGACGUGGGUCAUGAAACAGCUCAGGGCAUGCCGAGCACCAGUAAGCUCGUUAAUCCACUGGAA
CACUACAAACGCCAACGACGAGCGUUUCGCUCUCGCCGCUUAAGCGGUGAGCCGCUGCACUGAUCUGUCCUUGGGUCAGG
CGGGGGAAGGCAACUUCCCAGGGGGCAACCCCGAACCGCAGCAGCGACAUUCACAAGGAAUCGGCCACCGCUGGGGUCAC
ACGGCGUUGGUUUAAAUUACGUGAAUCGCCCUGGUCCGGCCCGUCGAUCGGCUAAGUCCAGGGUUAAAUCCAAAUAGAUC
GACUAAGCAUGUAGAACUGGUUGCGGAGGGCUUGCGGACGGGGGUUCAAUUCCCCCCGGCUCCACCA
>Borde_avium_0298 Bordetella avium tmRNA
GGGGCCGAUCCGGAUUCGACGUGGGUCAUGAAACAGUUCAGGGCAUGUCGAGCACCAGUACGCUCGUAAAACCACUGGAA
ACAAUACAAACGCCAACGACGAGCGUUUCGCUCUCGCCGCUUAAGCGGUGAGCCGCUGCACUGAUCUGUCCUUGGGUCAG
GCGGAGGAAGCAACUCCCGUAAGGGAGCCAUCGCCUAAAGGGGCAACCCUUGAACCGCAGCAGUGUUAUUCACAAGGAAU
CGGUCUGCGCUGGGGUCACACGGUUCAGGCUUAAAUUACGUGAAUCGCUUCGGUCCGGCCCGUUGAUCGGCUAAGUCCGG
GGUUAAAUCCAAAUAGAUCAACUAAGCAUGUAGAACUGACUGCGGAGGGCUUGCGGACGGGGGUUCAAUUCCCCCCGGCU
CCACCA
>Acthi_ferr1_0316 Acidithiobacillus ferrooxidans tmRNA, version 1 {ATCC 23270}
GGGGGCGACCGGCUUCGACGCAGGUCGCGAAGCCUUCGGUGCAUGCAGAGCUGCGGUUCGCUCUUAAAACUGGUCGCAGA
UUCAUAAUUGCCAACGACAGCAAUUACGCUCUCGCUGCUUAAGCAGUGAGCCCUCUGCCCGGAUUUGUCUGUGGAUCCGG
AGCCGAAAGGCGCGCGGAGGGUCAUGAAACACGGAAUCGUGCGCAUUCUAGUCUGUGGGAUGCGCGCUAAAUUAAAGCAG
AAUCGCCAUGUCGUCAUCCUGUCUGUCGGAGGGCGGUGCGGUUAAAGCCAAAAGACAAACUACGCAUGUAGAUCCGGUGG
UCUAGGUACUGCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Acthi_ferr2_0317 Acidithiobacillus ferrooxidans tmRNA, version 2
GGGGGCGACCGGCUUCGACGCAGGUCGCGAAGCCUUCGGUGCAUGCAGAGCUGCGGUUCGCUCUUAAAACUGGUCGCAGA
UUCAUAAUUGCCAACGACAGCAAUUACGCCCUCGCUGCUUAAGCAGUGAGCCCUCUGCCCGGAUUUGUCUGUGGAUCCGG
AGCCGAAAGGCGCGCGGAGGGUCAUGAAACACGGAAUCGUGCGCAUUCUAGUCUGUGGGAUGCGUGCUAAAUUAAAGCAG
AAUCGCCAUGUCGUCAUCCUGUCUGUCGGAGGGCGGUGCGGUUAAAGCCAAAAGACAAACUACGCAUGUAGAUCCGGUGG
UCUAGGUACUGCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Xylel_fast1_0299 Xylella fastidiosa tmRNA, version 1 {9a5c} AE004078:5137-5491; NC_002488:2602997-2603351
GGGGGUGCACUGGCUUCGACGGGGGUCACAAAAUCACUUGGUGCAUGCCGAGGGGGCCGCUUUCCUCGUAAAUCCAGCAG
CAAACUUAUAGUUGCCAACGAAGACAACUUCGCUGUAGCCGCUUAAGGCUUAAGCCUCGAAACUGCUUGUGUCCGUGCUC
GCAGCGUAGAGUCAUCAUCACGGAACCGCUGAGACGUGGCCGUCUGCCCAUCCUCGGUUAAAUCUAGCAGACUGGUUUCC
GGGUGCGCUUUGCCUGUCGUGCUGCCCGGCGACGAGACCUAACGGCGAGGAUAAGCAUGUAGGGCCGGGGAUGGAGUACU
UUCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Xylel_fast2_0300 Xylella fastidiosa tmRNA, version 2 {Dixon, Ann-1} AAAL02000007:78420-78066; NZ_AAAL02000007:78420-78066; AAAM03000014:13286-13640; NZ_AAAM03000014:13286-13640
GGGGGUGCACUGGCUUCGACGGGGGUCACAAAAUCACUUGGUGCAUGCCGAGGGGGCCGCUUUCCUCGUAAAUCCAGCAG
CACACUUAUAGUUGCCAACGAAGACAACUUCGCUCUAGCCGCUUAAGGCUUAAGCCUCGAAACUGCUUGUGUCCGUGCUC
GCAGCGUAGAGUCAUCAUCACGGAACCGCUGAGACGUGGCUGUCUGCCCACACUUGGUUAAAUCUAGCAGACUGGUUUCC
GGGUGCGCUUUGCCUGUCGUGCUGCCCGGCGACGAGACCUAACGGCCAGGAUAAGCAUGUAGGGCCGGGGAUGGAGUACU
UUCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Xylel_fast3_0301 Xylella fastidiosa tmRNA, version 3 {Ann-1} AAAM03000041:33267-32913; NZ_AAAM03000041:33267-32913
GGGGGUGCACUGGCUUCGACGGGGGUCACAAAAUCACUUGGUGCAUGCCGAGGGGGCCGCUUUCCUCGUAAAUCCAGCAG
CACACUUAUAGUUGCCAACGAAGACAACUUCGCUAUAGCCGCUUAAGGCUUAAGCCUCGAAACUGCUUGUGUCCGUGCUC
GCAGCGUAGAGUCAUCAUCACGGAACCGCUGAGACGUGGCCGUCUGCCCACCCUUGGUUAAAUCUAGCAGACUGGUUUCU
GGGUGCGCUUUGCCUGUCGUGCUGCCCGGCGACGAGACCUAACGGCCAGGAUAAGCAUGUAGGGCCGGGGAUGGAGUACU
UUCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Xylel_fast4_0302 Xylella fastidiosa tmRNA, version 4 {Temecula1} AE009442:2447459-2447813; NC_004556:2447459-2447813
GGGGGUGCACUGGCUUCGACGGGGGUCACAAAAUCACUUGGUGCAUGCCGAGGGGGCCGCUUUCCUCGUAAAUCCAGCAG
CACACUUAUAGUUGCCAACGAAGACAACUUCGCUCUAGCCGCUUAAGGCUUAAGCCUCGAAACUGCUUGUGUCCGUGCUC
GCAGCGUAGAGUCAUCAUCACGGAACCGCUGAGACGUGGCCGUCUGCCCACCCUUGGUUAAAUCUAGCAGACUGGUUUCC
GGGUGCGCUUUGCCUGUCGUGCUGCCCGGCGACGAGACCUAACGGCCAGGAUAAGCAUGUAGGGCCGGGGACGGAGUACU
UUCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Xanmo_camp1_0303 Xanthomonas campestris tmRNA, version 1 {campestris} AE012247:3390-2994; NC_003902:1711297-1710901; CP000050:3330960-3331356; NC_007086:3330960-3331356
GGGGGUGCACUGGUUUCGACGGGGGUCGCGAAGUCGCUUGGCGCAUGCCGAGGGGGCAGCUUUCCUCGUUAAUCCAGCAG
CAAACUUUUAGUUGCCAACGACGACAACUACGGUUCGGACUUCGCUAUCGCCGCUUAAUUGGCUUUAGUUGUAGUUCUAC
AGCCGCCUAAGGCGAACCCCCGAAACUACUUGUGCCCGUGCUCGUAGAUGUAGGGUCAUUAUCACGGAACCGCCGGUAGU
GGCUGCCUGUCAGCUAUCGGUUAGAUCAAGCAGGCUGGUUUUCAGGUGCGCUUUGCCCGCCGUGCUGCCUGGGAACGAGA
UCUAACGGAGGGAUAAGCAUGUAGUGCUGGGGAUGGAGUGCUUCCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Xanmo_camp2_0703 Xanthomonas campestris tmRNA, version 2 {vesicatoria} AM039952:1753447-1753051; NC_007508:1753447-1753051
GGGGGUGCACUGGUUUCGACGGGGGUCGCGAAGUCGCUUGGCGCAUGCCGAGGGGGCAGCUUUCCUCGUUAAUCCAGCAG
CAAACUUUUAGUUGCCAACGAUGACAACUACGGUUCGGACUCCGCUAUCGCCGCUUAAUUGGCUUUAGUUGUAGUUCUAC
AGCCGCCUAAGGCGAACCCCCGAACCUACUUGUGCCCGUGCUCGUAGGUGUAGGGUCAUUAUCACGGAACCAUCGGUAGU
GGCUGCCUGUCAGCUACCGGUCAGAUAAAGCAGGCUGGUUUCCAGGUGCGCUUUGCCAACCGUGCUGCCUGGAAACGAGA
UCUAACGGAGGGCUAAGCAUGUAGUGCUGGGGAUGGAGUGCUUCCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Xanmo_axono_0304 Xanthomonas axonopodis tmRNA AE011783:5129-4733; NC_003919:1746069-1745673
GGGGGUGCACUGGUUUCGACGGGGGUCGCGAAGUCGCUUGGCGCAUGCCGAGGGGGCAGCUUUCCUCGUUAAUCCAGCAG
CAAACUUUUAGUUGCCAACGAUGACAACUACGGUUCGGACUUCGCUAUCGCCGCUUAAUUGGCUUUAGUUGUAGUUCUAC
AGCCGCCUAAGGCGAACCCCCGAACCUACUUGUGCCCGUGCUCGUAGGUGUAGGGUCAUUAUCACGGAACCAUCGGUAGU
GGCUGCCUGUCAGCUACCGGUCAGAUAAAGCAGGCUGGUUUCCAGGUGCGCUUUGCCAACCGUGCUGCCUGGGAACGAGA
UCUAACGGAGGGCUAAGCAUGUAGUGCUGGGGAUGGAGUGCUUCCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Xanmo_oryza_0606 Xanthomonas oryzae tmRNA AE013598:3397715-3398111; NC_006834:3397715-3398111
GGGGGUGCACUGGUUUCGACGGGGGUCGCGAAGUCGCUUGGCGCAUGCCGAGGGGGCAGCUUUCCUCGUUAAUCCAGCAG
CAAACUUUUAGUUGCCAACGAUGACAACUACGGUUCGGACUUCGCUAUCGCCGCUUAAUUGGCUUUAGUUGUCGUUCUAC
AGCCGCCUAAGGCGAACCCCCGAACCUACUUGUGCCCGUGCUCGUAGGUGUAGGGUCAUUAUCACGGAACCAUCGGUAGU
GGCUGCCUGUCAGCUACCGGUUAGAUAAAGCAGGCUGGUUUUCAGGUGCGCUUUGCCAACCGUGCUGCCUGGGAAUGAGA
UCUAACGGAGGGCUAAGCAUGUAGUGCUGGGGAUGGAGUGCUUCCGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Uncul_rice4_0306 Uncultured rice4 tmRNA AACV01028831:1594-1241; BQ666870:1-54
GGGGGUGCAUUGGUUUCGACGGGGGUUGUGAAGUCGCCUGGCGCAUGCCGAGGGGGUAGCUUUCCUCGUAAAUCCAGCUG
CAAAACUCUAGUUGCCAACGACGACAACUACGCUCUGGCCGCUUAAGGCCUAAGCCUCGAAACCGCUUGUGUCCAUGCUC
GCGGUGUAGAGUCACUAUCAUGGAAUCGCGCUGGACGGCUGCCUGUCAGUCCGGCACUAGAACACAACAGGCUGGUUCCC
GGAUGCGCUUCGCGCACCGUGCUGUUCGGGGACGAGAUCCAACGGUGAGCUAAGCAUGUAGUGCUGGGGAUGGAGUGCCU
UCGGACGGCGGUUCAAUUCCGCCCACCUCCACCA
>Uncult_U01a_0311 Uncultured leafU01a tmRNA (ends unsequenced)
GCUGGUAACGGAAUCCGAAGUGCAUGCCGAGGUGUCAUGUCCUCGUAAAACCUGUGACAACCAAGCUAGUUGCGAACGAC
UCCAACUACGCCCUCGCCGCCUAAAUCCCGGUGAGCGUCCAUCCUUUCAGUGCCGAUACUGGUUGGAAUGGGCGUCGACU
CUUAUCGGAUCGUGGUGAAGCCCGCCCUUGGCCGAUCUGCUAAAACUCUAAGGGGAUAAGCGUUGGAGAUCCGUGCCUGU
CCGGGAGCCAACGUCGAAAACCAAAGAUCAGGCUAAGCAUGUAGAUCUGAGGGCUACGAUCUGGCGGACGCGG
>Uncult_U01b_0312 Uncultured leafU01b tmRNA (ends unsequenced)
GCUGGUAACGGAAUCCGAAGUGCAUGCCGAGGUGUCAUGUCCUCGUAAAUCCCGUGGCAACCAAGCUAGUUGCGAACGAC
UCCAACUACGCCCUCGCCGCCUAAAUCCCGGUGAGCGUCCAUCCUUUCGGUGCCGAUACCGGUUGGAAUGGGCGUCGACU
CUUAUCGGCUCGCGGUGAAGCCCGCCCUUGGCCGAUCUGCUAAAACCCUAAGGGGAUAAGCGUUGGAGAUCCGUGCCUGU
CCGGGAACCAACGUCGAAAACCAAAGAUCAGGCUAAGCAUGUAGAUCUGAGGGCUACGAUCUGGCGGACGCGG
>Steno_malto_0305 Stenotrophomonas maltophilia tmRNA
GGGGGUGCAUUGGUUUCGACGGGGGUUGUGAAGUCGCCUGGCGCAUGCCGAGGGGGUAGCUUUCCUCGUAAAUCCAGCUG
CAAAACUCUAGUUGCCAACGACGACAACUACGCUCUGGCCGCUUAAGGCCUAAGCCUCGAAACCGCUUGUGUCCAUGCUC
GCGGUGUAGAGUCACUAUCAUGGAAUCGCGCUGGGUGGCUGCCUGUCAGUCCGGCACUAGAACACAACAGGCUGGUUCCC
GGAUGCGCUUUGCACGCCGUGCUGUUCGGGGACGAGAUCCAACGGUGAGCUAAGCAUGUAGUGCUGGGGAUGGAGUGCCU
UCGGACGGCGGUUCAAUUCCGCCCACCUCCACCA
>Diche_nodos_0313 Dichelobacter nodosus tmRNA U20246:1-318; U20248:1-152
GGGGGCGUUCUUGGAUUCGACGGGGAUUGCGAGGCUCGAGGUGCAUGUCGAGAAUGAGAGAAUCUCGUUAAAUACUUUCA
AAACUUAUAGUUGCAAACGACGACAACUACGCUUUAGCGGCUUAAUUCCCGCUUUCGCUUACCUAGAUUUGUCUGUGGGU
UUACCGUAAGCGACAUUAACACAGAAUCGCUGGUUAACGCGUCCGCUGUUAAUCGGUUAAAUUAAGCGGAAUCGCUUGUA
AAAUGCCUGAGCGUUGGCUGUUUAUGAGUUAAACCUAAUUAACUGCUCUAAACAUGUAGUACCAAAAGUUAAGGAUUCGC
GGACGGGGGUUCAAAUCCCCCCGCCUCCACCA
>Franc_tula1_0314 Francisella tularensis tmRNA, version 1 {Schu 4} AJ749949:1737842-1738262; NC_006570:1737842-1738262
GGGGGCGAAUAUGGUUUCGACAUGAAUGUCAAAAUCUAAGGUGCAUGCCGAGGAAGUACCGUAACCUCGUUAAUAACAGU
ACAAAUGCCAAUAAUAACUGGCAACAAAAAAGCAAACCGCGUAGCGGCUAACGACAGCAACUUUGCUGCUGUUGCUAAAG
CUGCCUAGUCUAGCUUAAUAAUCUAGAUGCGCACGGAUAUGAUAGUCUUUCUUAUGACACUAUCUAUACAUCCGUUCAUA
UUCCGCAUAAGACGGUCUUUGCUUUUUGUCUGGGAGUUAAGGCUGUAUUUAACAGACUCGCUAACUAUUACCCUGGCUAA
UUGGGGAAUAGUCAAGCUAAACUCAAAUAGAUUAGCCUAAGCAUGUAGAUCCAAAGAUCUAGAGUUUGUGGACGCGGGUU
CAAAUCCCGCCGCCUCCACCA
>Franc_tula2_0315 Francisella tularensis tmRNA, version 2 {LVS}
GGGGGCGAAUAUGGUUUCGACAUGAAUGUCAAAAUCUAAGGUGCAUGCCGAGGAAGUACCGUAACCUCGUUAAUAACAGU
ACAAAUGCCAAUAAUAACUGGCAACAAAAAAGCAAACCGCGUAGCGGCUAACGACAGCAACUUUGCUGCUGUUGCUAAAG
CUGCCUAGUCUAGCUUAAUAACCUAGAUGCGCACGGAUAUGAUAGUCUUUCUUAUGACACUAUCUAUACAUCCGUUCAUA
UUCCGCAUAAGACGGUCUUUGCUUUUUGUCUGGGAGUUAAGGCUGUAUUUAACAGACUCGCUAACUAUUACCCUGGCUAA
UUGGGGAAUAGUCAAGCUAAACUCAAAUAGAUUAGCCUAAGCAUGUAGAUCCAAAGAUCUAGAGUUUGUGGACGCGGGUU
CAAAUCCCGCCGCCUCCACCA
>Thmic_cruno_0704 Thiomicrospira crunogena tmRNA CP000109:1520830-1521187; NC_007520:1520830-1521187
GGGGAUGCACUGGUUUCGACGGGGAGUACAAAGUUUAGGAUGCAUGUCGUGCCUGAAUGAUGCACGUAAAUCUUUAUUUC
AAUUUGUUAUAGUUGCAAACGACGAUAACUACGCUCUAGCGGCUUAAUCCCGCUAGCGCAGACUGGGACCGUUGUUCGUG
GCACCCAGCUCUGUGUCGACUCACACGGAAUCGUCGGGUCUUAUGUGUUUGGAUAAGACUUGACUAAACUUAACAAACUC
GCUUAAUGUGAUCCCUGCUGGCCGGGCAGCAUUAAGUUAAAAUAAUAGACCAAAUAAACAUGUAGAGUUUUAAAUGGAGG
CUUCUCGGACGGCGGUUCGACUCCGCCCAUCUCCACCA
>Ntsco_ocean_0607 Nitrosococcus oceani tmRNA CP000127:1307217-1307577; NC_007484:1307217-1307577
GGGGGCGACCUGGCUUCGACGCGGGUAGCAAAACCUAAGGGGCAUGCCGAGGUGCAGUGACCUCGUUAAUCACGCUGCAA
CAUUAUAGUUGCCAACGACGACAACUACGCACUCGCUGCUUAAAACCCAGUAGGGUGCCGUCUGACUGAAGCCGUGCUUG
UGCGUUCAGAUUUCAGGCGUCGAUUCUCACAAGAUCGCGGUGAAGUUCUCCCAGGGCAGACCCGCUAAAACUUUACUGGG
AUCGCCGUAUGUUUUCCUUGCCCGUCGGGUAGCAUGCGGUUAAAUUAAUGACUGGGCUAUGCAUGUAGAACCGAAGGCGG
AGUACUUGUGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Uncul_whal1_0691 Uncultured whale1 tmRNA AAFZ01002114:680-1094
GGGGGCGUAUUGGAUUCGACGCCGGUUACAAAACUUGAGGUGCAUGCCGAGAUGGUGACCAAUCUCGUUAAUCCAAAGUC
GCAAACCUUAUAGUUGCCAACGACGACAACUACGCACUCGCUGCUUAUACACCAGUAGAGCGCCAUCUGACUGGAGCCGU
GCUUAUGCGUCCAGCGCUUCAUCUGCCCCCGGGCCUCAAAACCCAGGGCAGCGGCGAAGCAUUCAGGUGUCAUAACUCAU
AAGAUCGCGAUGACCCACGUCUGGGGGUGACUCGCUAAAACCUAAACCAGAAUCGCCAUUUCACAUGCCCUGCCGGCCGG
GCAGUGAGAGGUUAAAUAUAAUAGACCGAACUAAGCAUGUAGAGCCGAUAGCAGCGGACUGACGGACGCGGGUUCAAUUC
CCGCCGCCUCCACCA
>Legio_pneum_0307 Legionella pneumophila tmRNA U68079:22-383; AE017354:172914-173319; NC_002942:172914-173319; CR628336:182379-182784; NC_006368:182379-182784; CR628337:175122-175527; NC_006369:175122-175527
GGGGGCGACCUGGCUUCGACGUGGGUUGCAAAACCGGAAGUGCAUGCCGAGAAGGAGAUCUCUCGUAAAUAAGACUCAAU
UAAAUAUAAAUGCAAACGAUGAAAACUUUGCUGGUGGGGAAGCUAUCGCUGCCUAAUAAGCACUUUAGUUAAACCAUCAC
UGUGUACUGGCCAAUAAACCCAGUAUCCCGUUCGACCGAGCCCGCUUAUCGGUAUCGAAUCAACGGUCAUAAGAGAUAAG
CUAGCGUCCUAAUCUAUCCCGGGUUAUGGCGCGAAACUCAGGGAAUCGCUGUGUAUCAUCCUGCCCGUCGGAGGAGCCAC
AGUUAAAUUCAAAAGACAAGGCUAUGCAUGUAGAGCUAAAGGCAGAGGACUUGCGGACGCGGGUUCGAUUCCCGCCGCCU
CCACCA
>Bctr_SAR1_1_0622 Bacteria SAR-1 tmRNA, version 1 (5-prime end unsequenced) AACY01111840:1-183
CGGCUAAACACAUAGUCUAGCCAGGCUGUAUUGCUUGGAUACAGUUUGGUUAAAUUUAAUCAAGCUCGCAUUCAUGCCCU
GCUCUUCGGGUGAUGGAUGCUAAAAAUAAUAGAAUGAGCUAUGCAUGUAGAAGUUAGGCUGAAGGAUUGACGGACGCGGG
UUCAAUUCCCGCCGCCUCCACCA
>Bctr_SAR1_2_0623 Bacteria SAR-1 tmRNA, version 2 (3-prime end unsequenced) AACY01029760:262-1
GGGGGCGACCGGUUUCGACAUUUUAGAAUGAAAUCUUAGAUUGCAUGUAGAGCUUAGUAACUCUUAAAACUUCUAAACUA
UAUUAAGUGCCGAUAAUGGCCAAAUGGCUUUUGCUUAAUUGCUAAAGUCCAUCAUCAGUAGACGUUUCUCAUCGUUCGCU
GAAUGGUGUCAUAAAAAUGAGAUAGUUUAUUUUUCUGCUUCGGUUUAAUAAAUGAAUCCUUAGAAGAUAGCUAUAUGCCU
GUUUGUUCUGUACUGUCAUAUA
>Shew_SAR2_2_0628 Shewanella SAR-2 pre-tmRNA AACY01086943:5888-6242
GGGGGCGACCGGUUUCGACGGGGUAAGAUAAUGAUAAGAUUGCAUGCAGAGGUUCGGGAUCCUCUUUAAUAUCCCCGAAA
UAUCAAUAAAUGCCGAUUACGGCUACAUGGCAGCUGCUUAAUUAGCUCUGCCCGCUCUGGAUUAAGUUUGUCUGUGGUUU
AAUCUAAGAGCGUCAUAAACGCAGACUGGUCCCUGGAUUUGUUUACUAGAAAGGGAUAAGAUGUUUUGUAAACUGGUUGA
UAUAUGGGUUGUUAUUUGUCCGCUAUAUCAAUGAGAAUAAAUCAGAUGACUAUGUAUGUAGACGUUUUGUUAGAAUCUAU
CUCGGACGGGAGUUCGAAUCUCCCCGCCUCCACau
>Coxie_burne_0308 Coxiella burnetii pre-tmRNA AE016828:1259243-1259602; NC_002971:1259243-1259602
GGGGGCGACCAGGCUUCGACGUGGAUCCUGAAACCCGAGACGCAUGUCGAGCCGGCAACGAAGGCUCGUAAAUCCAUCAG
UUGCAAACAGAUAGUUGCAAACGAUAGUAAUUAUCUCCAAGAAGCUUACGCAUAAAGCUUCUUCCGUUGCUGGGAUUCGC
UUAUAGAUCCCUACCAACGGCCAUAGCAUAUAAGCUCGCCCUCAAGCAUGGCUCAUGACUUGAAGGUUAAACAGAAGAGC
UCGCAGUCAAUUUCCCCUGCACGUCGGGCGAUUGACUGUUAAAUCAUAGACGAUGCUAAGCAUGUAGUGUCAACGGCGGA
UGAUUUACGGACGCGGGUUCAAUUCCCGCCGCCUCCAuca
>Mecoc_capsu_0309 Methylococcus capsulatus tmRNA AE017282:2818519-2818874; NC_002977:2818519-2818874
GGGGGCGACAUGGCUUCGACGUGGAUCGCGAAACCUGAGGUGCAUGCCGAGGUGCAGAUGACCUCGUAAAUCCAUCUGCA
AACCAAAUAAACGCCAACGACGACGUUUACGCACUGGCCGCUUAAGCCGGCCGGCCUCUGAUCAGCAGCUCGCUUACAAG
CGGCUGGUUGGGGGUAACCCAAUUGUAAGCUCGCGCUGAAGUCUGUCCGGGGCCGAAGCGCUAAAACCCAACGGAAUCGC
CGUCCGUCUUCCCUGCCACUCGGGUAGCGUCCGGCUAAAUCAAUAGAGUGGAUACGCAUGUAGAACCGAUGGCAGAGGAU
UUGCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Shew_SAR1_2_0624 Shewanella SAR-1 tmRNA, version 2 AACY01087071:454-107
GGGGGCGAAUAGGGUUCGACGUUUCUACUGGACUCCGAAGCGCAUGCCAAGAUUGUAGUAAUUCUUGUAAAACAUACUAC
AAAAAAAAUAGUUGCAAAUAACGACAACUACGCUUUAGCAGCUUAAUGCUAACCGAUGCAAGAAUUGACUGUGGUUUGAA
GCAUCGGCUAAACACACAGUCUAGCCAAGCUAUAUUGCUUGGAUAUAGUUUGGUAAAAACUUAAUCAAGCUAGCUUUUAU
GCCCUGCUCUUCGGGUGAUAAAAGUUAAAAAUAAUAGAAUGAGCUAUGCAUGUAGAAGUUAGGCUGAAGGAUUGACGGAC
GCGGGUUCAAUUCCCGCCGCCUCCACCA
>Uncult_EBAC_0310 Uncultured marineEBAC20E09 tmRNA AY552545:118125-117779
GGGGGCGAAUAGGGUUCGACGUUUCUACUGGACUCCGAAGCGCAUGCCAAGAUUGUAGUAAUUCUUGUAAAACAUACUAC
AAAAAAAAUAGUUGCAAAUAACGACAACUACGCUUUAGCAGCUUAAUGCUAACCGAUGUAAGAAUUGACUGUGGUUUGAA
GCAUCGGCUAAACACACAGUCUAGCCAAGCUAUAUUGCUUGGAUAUAGUUUGGUAAAACUUAAUCAAGCUAGCUUUUAUG
CCCUGCUCUUCGGGUAAUAAAAGUUAAAAACAAUAGAAUGAGCUAAGCAUGUAGAAGUUAGGCUGAAGGAUUAGCGGACG
CGGGUUCAAUUCCCGCCGCCUCCACCA
>Azotb_vinel_0321 Azotobacter vinelandii tmRNA AAAU03000017:64214-64565; NZ_AAAU03000017:64214-64565
GGGGCCGAUUAGGAUUCGACGCCGGUAACGAAACUUGAGGGGCAUGCCGAGUUGGUGGCAGAACUCGUAAAUCCACUGCU
ACAAACUCAUAGUUGCCAACGACGACAACUACGCUCUGGCGGCUUAAUGCCCCAGCAGUCUCCAGGGGAUGCCUGUAAAC
CCGAAGAGACUGUCAGAUAGAACAGGAUCGCCGCCAAGUUCGCUGUAGACGUAACGGCUAAAACUCAUACAGCUCGCCCA
AAGCACCCUGCCCGUCGGGCCGCAAUGGGUUAACUCAAUAGACAGGGCUAAGCAUGUAGAACCGAUAGCGGAGAGCUGGC
GGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Uncul_bone1_0692 Uncultured bone1 tmRNA (5-prime end unsequenced) AAGA01012173:1-227
CCUUCGGGCACCCCGAGGGUCAGGAUUCGGCUCGAGCGAAGUGAUUGUCAGAUAGAACAGGAUCGCCGCCUAGUACGUUG
UGGACGACGUGGCUAAACAUUACACAACUCGCUCCAAGCACCCUGCCACUCGGGCGGUGAGGAGUUAACUCAGUAGAGAU
GGCUAAGCAUGUAGAACCGAUAGCGGCGGACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Psmon_aerug_0322 Pseudomonas aeruginosa tmRNA U68078:22-330; AE004517:7001-6649; NC_002516:901872-901520; AABQ07000002:203431-203079; NZ_AABQ07000002:203431-203079; BZ552150:527-175; BZ554992:462-110; BZ558699:696-343X; AAKW01000081:33048-32696; NZ_AAKW01000081:33048-32696
GGGGCCGAUUAGGAUUCGACGCCGGUAACAAAACUUGAGGGGCAUGCCGAGCUGGUAGCAGAACUCGUAAAUUCGCUGCU
GCAAACUUAUAGUUGCCAACGACGACAACUACGCUCUAGCUGCUUAAUGCGGCUAGCAGUCGCUAGGGGAUGCCUGUAAA
CCCGAAACGACUGUCAGAUAGAACAGGAUCGCCGCCAAGUUCGCUGUAGACGUAACGGCUAAAACUCAUACAGCUCGCUC
CAAGCACCCUGCCACUCGGGCGGCGCGGAGUUAACUCAGUAGAGCUGGCUAAGCAUGUAGAACCGAUAGCGGAGAGCUGG
CGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Psmon_syri1_0323 Pseudomonas syringae tmRNA, version 1 {DC3000} AE016853:5086183-5086570; NC_004578:5086183-5086570
GGGGCCGAUUUGGAUUCGACGCCGGUGAUGAAACUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUU
GCAACUUUCUAUAGUUGCCAAUGACGAAAACUACGGUGCUCAACUAGCUGCGUAAGCAGCCUAGCCGCACUUCUGGUAGC
UUCGGCUCCAGCAAUCAUCAGGGGAUGCCUGUAAACCCAAAAUGAUUGUCAUAUAGAACAGGAUCGUCGCCUAGUACGUU
GUGGACGAAGCGACUAAAACUUACGCAACUCGCCCAAUGCACCCUGCCCGUCGGGUCGCUGAGGGUUAACUUAAUAGACA
CGGCUACGCAUGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Psmon_syri2_0324 Pseudomonas syringae tmRNA, version 2 {B728a} CP000075:4999820-5000211; NC_007005:4999820-5000211
GGGGCCGAUUUGGAUUCGACGCCGGUGAUGAAACUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUU
GCAACUUUCUAUAGUUGCCAAUGACGAAACCUACGGGGAAUACGCUCUCGCCGCGUAAGCGGUGCUAGCCUUCCUUCUGG
UAGCUUCGGCUCCAGCAAUCAUCAGGGGAUGCCUGUAAACCCGAAAUGAUUGUCAUAUAGAACAGGAUCGUCGCCUAGUA
CGUUGUGGACGAAGCGACUAAAACUUACACAACUCGCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGUUAACUUAAUA
GACACGGCUAAGCAUGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Psmon_syri3_0325 Pseudomonas syringae tmRNA, version 3 {1448A} CP000058:4804338-4804725; NC_005773:4804338-4804725
GGGGCCGAUUUGGAUUCGACGCCGGUGAUGAAACUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUU
GCAACUUUCUAUAGUUGCCAAUGACGAAAACUACGGUGCUCAACUAGCUGCGUAAGCAGCCUAGCCGCACUUCUGGUAGC
UUCGGCUCCAGCAAUCAUCAGGGGAUGUCUGUAAACCCAAAAUGAUUGUCAUAUAGAACAGAAUCGCCGUGCAGUACGCU
GUGGACGAAUCGGCUAAAACUUACACAGCUCGCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGUUAACUUAAUAGACA
CGGCUACGCAUGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Psmon_fluo1_0326 Pseudomonas fluorescens tmRNA, version 1 {PfO-1} CP000094:879220-878831; NC_007492:879220-878831
GGGGCCGUUUAGGAUUCGACGCCGGUUGCGAAACUCUAGGUGCAUGCCGACUUGGUAACAGAAGUCGUAAAUCCACUGUU
GCAACUACUUAUAGUUGCCAAUGACGACCAAUACGGUGCUGCUCUCGCUGCUUAAUUGCAGCUGACAUGCACUCCUGGUA
CCUUCGGGUCCAGCAAUCAUCAGGGGAUGUCUGUAAACCCAAAAUGAUUGUCAUAUAGAACAGAAUCGCCGUGCAGUACG
UUGUGGACGAAGCGGCUAAAACUUACACAACUCGCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGUUAACUUAAUAGA
CACGGCUACGCAUGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Psmon_fluo2_0327 Pseudomonas fluorescens tmRNA, version 2 {SBW25}
GGGGCCGUUUAGGAUUCGACGCCGGUCGCGAAACUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUU
GCAACUUCUUAUAGUUGCCAAUGACGAAAACUACGGCCAGGAAUUCGCUCUCGCUGCGUAAGCAGCCUUAGCCCUGAGCU
UCUGGUACCUUCGGGUCCAGCAAUCACCAGGGGAUGUCUGUAAACCCAAAGUGAUUGUCAUAUAGAACAGAAUCGCCGUG
CAGUACGUUGUGGACGAAGCGGCUAAAACUUACACAACUCGCCCAAAGCACCCUGCCCUUCGGGUCGCUGAGGGUUAACU
UAAUAGAAACGGCUACGCAUGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Uncul_cand1_0709 Uncultured candida1 tmRNA CZ292912:160-556
GGGGCCGUUUAGGAUUCGACGCCGGUUGCGAAACUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUU
GCAACUUCUUAUAGUUGCCAAUGACGAAAACUACGGCCAGGAAUUCGCUCUCGCUGCGUAAGCAGCCUUAGCCCUGAGCU
UCUGGUACCUUCGGGUCCAGCAAUCACCAGGGGAUGUCUGUAAACCCAAAGUGAUUGUCAUAUAGAACAGAAUCGCCGUG
CAGUACGUUGUGGACGAAGCGGCUAAAACUUACACAACUCGCCCAAAGCACCCUGCCCUUCGGGUCGCUGAGGGUUAACU
UAAUAGAAACGGCUACGCAUGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Uncul_humn1_0645 Uncultured human1 tmRNA (5-prime end unsequenced) BE092250:288-71
GCAAUCACCAGGGGAUGUCUGUAAACCCAAAGUGAUUGUCAUAUAGAACAGAAUCGCCGUGCAGUACGUUGUGGACGAAG
CGGCUAAAACUUACACAACUCGCCCAAAGCACCCUGCCCUUCGGGUCGCUGAGGGUUAACUUAAUAGAAACGGCUAAGCA
UGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Uncul_chck1_0674 Uncultured chicken1 pre-tmRNA (3-prime end unsequenced) CL280628:25-128
GGGGCCGUUUAGGAUUCGACGCCGGUUGCGAAACUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUU
GCAACUUCUUAUAGUUGCCAAUGA
>Psmon_fluo3_0328 Pseudomonas fluorescens tmRNA, version 3 {Pf-5} CP000076:938686-938293; NC_004129:938686-938293
GGGGCCGUUUAGGAUUCGACGCCGGUUGCGAAACUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUU
GCAACUUCCUAUAGUUGCCAAUGACGAAACCUACGGGGAUUACGCUCUCGCUGCGUAAGCAGCCUUAGCCCUUCCCCCCU
GGUACCUUCGGGUCCAGCAAUCAUCAGGGGAUGUCUGUAAACCCAAAAUGAUUGUCAUAUAGAACAGAAUCGCCGUGCAG
UACGUUGUGGACGAAGCGGCUAAAACUUACACAACUCGCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGUUAACUCAA
UAGACACGGCUAAGCAUGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Psmon_fluo4_0329 Pseudomonas fluorescens tmRNA, version 4 (ends unsequenced) {ATCC 17400} AY911520:1-350
GCCGGUUGCGAACCUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUUGCAACUUUCUAUAGUUGCCA
AUGACGAAACCUACGGGGAAUACGCUCUCGCUGCGUAAGCAGCCUUAGCCCUUCCCUCCUGGUACCUUCGGGUCCAGCAA
UCAUCAGGGGAUGUCUGUAAACCCAAAGUGAUUGUCAUAUAGAACAGAAUCGCCGUGCAGUACGUUGUGGACGAAGCGGC
UAAAACUUACACAACUCGCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGUUAACUUAAUAGACACGGCUACGCAUGUA
GUACCGACAGCAGAGUACUGGCGGACGGGG
>Psmon_chlor_0330 Pseudomonas chlororaphis tmRNA (ends unsequenced) AY911521:1-348
GCCGGUUGCGAAACUUUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUUGCAACUUCCUAUAGUUGCCA
AUGACGAAACCUACGGGGAAUACGCUCUCGCUGCGUAAGCGGCGCUAGCCUUCCUUCUGGUACCUUCGGGUCCAGCAAUC
AUCAGGGGAUGUCUGUAAACCCGAAAUGAUUGUCAUACAGAACAGAAUCGCCGUGCAGUACGUUGUGGACGAAGCGGCUA
AAACUUACACAACUCGCCCAAAGCACCCUGCCCGUCGGGUCGCUGAGGGUUAACUCAAUAGACACGGCUACGCAUGUAGU
ACCGACAGCGGAGUACUGGCGGACGGGG
>Psmon_puti1_0331 Pseudomonas putida tmRNA, version 1 {KT2440} AE015451:5390009-5390407; NC_002947:5390009-5390407
GGGGCCGAUUAGGAUUCGACGCCGGUAGCGAAACUCUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUU
GCAACUUUUAUAGUUGCCAAUGACGAAAACUACGGCGCGGAGUACAAGCUGGCUGCGUAAGCAGUCCUCUUGACCCGUUG
CUUCUGGUAGCUUCGGCUCCAGCAAUCACUAGGGGAUGCCUGUAAACCCGAACUGAUUGUCAUACAGAACAGGAUCGUCG
CGUAGCACGUUGUGGGCGAAGUGACUAAAACUUACACAACUCAUCCAAAGCACCCUGCCCGUCGGGCGGCUGCGGAUUAA
AUCAGUAGACACGGCUAAGCAUGUAGUACCGACAGCGGAGUACUGGCGGACGGGGGUUCAAAUCCCCCCGGCUCCACCA
>Psmon_puti2_0332 Pseudomonas putida tmRNA, version 2 (ends unsequenced) {ATCC 12633} AY911522:1-349
GCCGGUAGCGAAACUCUAGGUGCAUGCCGAGUUGGUAACAGAACUCGUAAAUCCACUGUUGCAACUUUCUAUAGUUGCCA
AUGACGAAACCUACGGCGAGGAAACCUACGCUCUCGCAGCGUAAGUGACCUUUGCUUCUGGUAGCUUCGGCUCCAGCAAU
CACUAGGGGAUGCCUGUAAACCCGAACUGAUUGUCAUACAGAACAGGAUCGUCGCGUAGCACGUUGUGGGCGAAGUGACU
AAAACUUACACAACUCAUCCAAAGCACCCUGCCCGUCGGGCGGCUGCGGAUUAAAUCAGUAGACACGGCUACGCAUGUAG
UACCGACAGCGGAGUACUGGCGGACGGGG
>Morax_catar_0649 Moraxella catarrhalis tmRNA AX067460:32168-32526; AR408756:32168-32526
GGGGAUGUUCUGGCUUCGACGCUGGUAGCGAAACCUAAUGAUGCAUGUCAAGAGCGUGUGACUCUUGUAAAUCAACAUAC
AUUUAAAAUAGUCGCAAACGACGAAACUUACGCACUAGCAGCUUAAGGGCUGCUUAGGACGGCACAAAUUGCCUUUGGUU
UGGUUGCUCUCCUAGAUGCGAAUGCACAAAGGAUAGCCAAAAUUAGCGUUGCGAUGAUUUUGGCGAAAUUCUUAGCAAAU
CGUCCAAUCCAUCCUGACUGUCGGUUCGGUGCGGAUUAAAGCCAUAGACAGAAUCUAAGCAUGUAGAUUCAUAGAUGUAG
UACUGGCGGACGCGGGUUCGACUCCCGCCAUCUCCACCA
>Acinbr_ADP1_0318 Acinetobacter ADP1 tmRNA CR543861:914849-915208; NC_005966:914849-915208
GGGGAUGUUAUUGGCUUCGACGCUGGUGAUGAAGCUCAUAGAUGCAUGCCGAGAGCGCAUUUUCUCUCGUAAAUAAAAUU
UGCAUUUUAAUAGUCGCAAACGACGAAACUUACGCUCUAGCUGCCUAAGGGCAGUUUGUCCGCUUCCUAGAAUACUUGUG
GUUUAGGAACCCGACCGUAGCGCACGCACACAAGUCCGUAUAGAGUCAAGCCUCGGGGCUUUAUACCAAACUUAGAGGAU
CGCAUCUUGUACCCUGUUCGUCGGGUCACUGGGUGUUAAAACAAUAGACGAUAUCUAAGCAUGUAGUAUUCUCGAGUGUA
GUGCUGGCGGACGCGGGUUCAACUCCCGCCAUCUCCACCA
>Acinb_bauma_0650 Acinetobacter baumannii tmRNA (5-prime end unsequenced) AR319033:1-39
UGCUGGCGGACGCGGGUUCAACUCCCGCCAUCUCCACCA
>Uncul_reman_0632 Uncultured c_remanei1 tmRNA AAGD01019434:4370-4012
GGGGAUGUUAUUGGCUUCGACGCCGAUGAUGAAGCUCAUAGAUGCAUGCCGAGAGCGCAUUUUCUCUCGUAAAUCAAAUU
UGCAUAUUUUAGUCGCAAACGACGAAUCUUACGCUCUAGCUGCCUAAGGGCAGCUUGUCCGCUUCACUGAAUACUUGUGG
UCAGUGGACCCGACUGUAGCGCACGCACACAAGUCCGUAUAAAGUCAAGCCUCGGGGCUUUAUACUAAACUUAGAGGAUC
GCGUUUUGUACCCUGUUCGUCGGGUCACUUAAUGUUAAAAUAAUUGACGAUAUCUAAGCAUGUAGUAUUCUCGAGUGUAG
UGUUGGCGGACGCGGGUUCAACUCCCGCCAUCUCCACCA
>Uncul_bone3_0693 Uncultured bone3 tmRNA AAGA01018978:816-458
GGGGAUGUUCUGGCUUCGACGCUGGUGAUGAAACUCAAUGAUGCAUGUCGAGAGUGUAUGUCCUCUCGUUAAUCAAACAU
AUAUUGUUAUAGUCGCAAACGACGAAACUUACGCUCUAGCAGCUUAAACCCUGCUUACUUAGUUGCUGAUCACCUACAGU
UGGUUAACUAAGUUGAAGCGUCCGCAUGUAGGCUCGCCACAAGUGAUUGUCUCAAUUGCUUGGGUUCAAAAGUAGAGAAU
CGUCCAAUCCAUCCUGACUGUCGGAUCGGUGCGGAUUAAAUUUAAAGACAGAAACUAAACAUGUAGAUUCAUGAGCGUAA
UGCUGGCGGACGCGGGUUCAACUCCCGCCAUCUCCACCA
>Psycb_cryha_0710 Psychrobacter cryohalolentis tmRNA AAJC01000043:4948-5306; NZ_AAJC01000043:4948-5306
GGGGAUGUUCUGGCUUCGACGCUGGUGAUGAAACUCAAUGAUGCAUGUCGAGAGUAUAUGUCCUCUCGUUAAUCAAACAU
AUAUUGUUAUAGUCGCAAACGACGAAAAUUACGCUCUAGCAGCUUAAACCCUGUUUACUUGGUUGCUGAUCAUCUACAGU
UGGUCAACUAAGUUGAAGCGUCCGCAUGUAGAAGCGCCACAAGUGAUUGUCUCAAUUGCUUGGGUUUAAAAGUAGAGAAU
CGUCCUAUCCAUCCUGACUGUCGGAUCGGUGCGGACUAAAACCAAAGACAGAAACUAAACAUGUAGAUUCAUGAGCGUAA
UGCUGGCGGACGCGGGUUCAACUCCCGCCAUCUCCACCA
>Psycb_arcti_0319 Psychrobacter arcticus tmRNA CP000082:1764614-1764256; NC_007204:1764614-1764256
GGGGAUGUUCUGGCUUCGACGCUGGUGAUGAAACUCAAUGAUGCAUGUCGAGAGUAUAUGUCCUCUCGUUAAUCAAACAU
AUAUUGUUAUAGUCGCAAACGACGAAAAUUACGCUCUAGCAGCUUAAACCCUGUUUACUUGGUUGCUGAUCAUCUACAGU
UGGUCAACUAAGUUGAAGCGUCCGCAUGUAGAAGCGCCACAAGUGAUUGUCUCAAUUGCUUGGGUUUAAAAGUAGAGAAU
CAUCCUAUCCAUCCUGACUGUCGGAUCGGUGCGGACUAAAACCAAAGACAGAAACUAAACAUGUAGAUUCAUGAGCGUAA
UGCUGGCGGACGCGGGUUCAACUCCCGCCAUCUCCACCA
>Psycb_urati_0320 Psychrobacter urativorans tmRNA (ends unsequenced) AY846305:1-315
GCUGGUGAUGAAACUCAAUGAUGCAUGUCGAGAGUAUAUGUCCUCUCGUUAAUCCAACAUAUAUUGUUAUAGUCGCAAAC
GACGAAAAUUACGCUCUAGCAGCUUAAACCCUGUUUACUUGGUUGCUGAUCACCUACAGUUGGUCAACUAAGUUGAAGCG
UCCGCAUGUAGGAUCGCCACAAGGGAUUGUCUCAAUCCUUUGGGUUCAAAAGUAGAGACUCGGCUAAUCCAUCCUGACUG
UCGGAUCGGUGCAGACUAAAAUUAAAGACAGAAACUAAACAUGUAGAUUCAUGAGCGUAAUGCUGGCGGACGCGG
>Chrha_salex_0608 Chromohalobacter salexigens pre-tmRNA AAHZ01000020:50035-49656; NZ_AAHZ01000020:50035-49656
GGGGGCGACAUGGCUUCGACGCCGGUGACAAUCCCUGAGGUGCAUGCCGAGAGCGUAACGUAUCUCGUAAAUCCAACGUU
ACGAUUAAAUAGUCGCAAACGACGACAACUACGCUCAGGGCGCGCUGGCAGCGUAACAACUGCUAGCUUCUAGUCCGGCC
CGGAGGUGAUGUGCCCAUUCAUCACCGAUGGGAUACGAGCUCAGACUGAUGGGAUCGCGGUUGGCCCUGUCCUCGUGUCA
GCCGCUAAAACUUAGAGGAAUCGCGUCGCUGGAUCCUGCCCGUCGGAGCCAGGGACGUUAAAUCAGAAGACGGACCUAAG
CAUGUAGAGCCGAUGGGUGAGUGCCGGCGGACGGGGGUUCAAUUCCCCCCGCCUCCACCA
>Marbr_hydro_0333 Marinobacter hydrocarbonoclasticus tmRNA (ends unsequenced) U68077:22-343
GCCGGUGACGAACCCUUGGGUGCAUGCCGAGAUGGCAGCGAAUCUCGUAAAUCCAAAGCUGCAACGUAAUAGUCGCAAAC
GACGAAAACUACGCACUGGCGGCGUAAGCCGUUCCAGUCGUCCUGGCUGAGGCGCCUAUAACUCAGUAGCAACAUCCCAG
GACGUCAUCGCUUAUAGGCUGCUCCGUUCACCAGAGCUCACUGGUGUUCGGCUAAGAUUAAAGAGCUCGCCUCUUGCACC
CUGACCUUCGGGUCGCUUGAGGUUAAAUCAAUAGAAGGACACUAAGCAUGUAGACCUCAAGGCCUAGUGCUGGCGGACGC
GG
>Marbr_aquae_0705 Marinobacter aquaeolei tmRNA AALG01000009:11104-11469; NZ_AALG01000009:11104-11469
GGGGACGACUUGGCUUCGACGCCGGUGACGAACCCUUGGGUGCAUGCCGAGAUGGCAGCGAAUCUCGUAAAUCCAAAGCU
GCAACGUAAUAGUCGCAAACGACGAAAACUACGCACUGGCGGCGUAAGCCGUUCCAGUCGUCCUGGCUGAGGCGCCUAUA
ACUCAGUAGCAACAUCCCAGGACGUCAUCGCUUAUAGGCUGCUCCGUUCACCAGAGCUCACUGGUGUUCGGCUAAGAUUA
AAGAGCUCGCCUCUCGCACCCUGACCUUCGGGUCGCUUGAGGUUAAAUCAAUAGAAGGACACUAAGCAUGUAGACCUCAA
GGCCUAGUGCUGGCGGACGCGGGUUCAAUUCCCGCCGUCUCCACCA
>Micbu_degra_0334 Saccharophagus degradans tmRNA AABI03000007:121237-121625; NZ_AABI03000007:121237-121625
GGGGGCGAUUAGGAUUCGACGCCGGUAACAAAACCCGAAGUGCAUGUCGUGAGGGUAGCCAAUCACGUAAAUCCAAAGCU
GCAAAUUAUCAGUUGCCAAUGAUGACAACUACGGUGCUCAACUAGCUGCGUAAGUAGCUUUUUGUUACACCAUCUAGCGG
UACGCCGCUAGCGGUUUUUAACAAGGUGCCAGUACCGCGUUAACGACUGUCACUUAGAACUGGAUCGCAGUGAAGCCUGC
CUGGGGUGGAUCAGCUAAACUUUUACAGGAUCGCGCUUUUCGUCCCGCCCGCUGGGCUGUAAAGCGUUAAAUCAAUAAGC
GGUUCUAAGCAUGUAGAGCUGACGGCGGAGUACUGACGGACGGGGGUUCAAAUCCCCCCGCCUCCACCA
>Uncul_flatw_0638 Uncultured flatworm1 tmRNA (3-prime end unsequenced) BU276175:28-321
GGGGACGACAUGGCUUCGACGCUGGUAACAAAACCAAAGGUGCAUGUCGAGUGUACAGUGGCACUCGUACUCCAAUCGCU
GUAAUCAAUAGUUGCAAACGAUGACAACUACGGUGCUCAACUAGCUGCGUAAGCAGUGAAAGAUCACUUUUAGGGUUACG
ACCCUAUCGGUCUCUAGCAAGGUGCCUGUAUCGCGCUAUAGACUGUCAACUAGAACAGGAUCGUAAAGCGGCACACUCAG
GGUUGUUUUACUAAACUUAACUGAGAUCGCCAACCACGUCCUGCCCGUUGGGCUNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNU
>Gamprb_SAR1_0625 Gammaproteobacteria SAR-1 tmRNA AACY01081759:23361-23705
GGGGGCGUAUUAGGCUUUGACGUCUACCACGGAACCCAAAGUGCAUACCGAGCACGAACAUAACUCGUAAAAUAUUGUUU
AAAACAAAUAGUUGCAAAUAAUUACAACUAUAGUUUGGCAGCUUAAUGCCAACCUGUUAUCAUUUGUGACCUACAACAUU
UGAUAACGGUCAUUUUAGUAGGAUAUACUCUACCAGAGCCCACUUGUAGAGCGAAUUUAAGGGCUUAGCUUAGUGUGUCU
UGAUCAUCAGGCUACACCAAAGUGAAUUAAAUUGAUGAAUCUAAGUAUGUAGAGACUAGGGGAAAGUGAUGACGGACGUG
GGUUCAAAUCCCGCCGCCUCCACCA
>Colwe_psych_0335 Colwellia psychrerythraea tmRNA CP000083:3996724-3997073; NC_003910:3996724-3997073
GGGGCGGAUCUAGGAUUCGACAAGAUUCAUGAAACUCAAGGUGCAUGCCCAGGGGCGGUUUGCCUGGUAAAAAGCCGCAA
AACUAUAAUUGCUAACGACGAUACGUUCGCACUAGCCGCUUAGGCUAGCCAUCGCCUUGAAAUCUCUCCUAUUGGUUAGA
GGAUCGAUGGUCACCCCAAAUAGGAUAGCGAGGGAAGCACGCUUGAGGCUGAACCGCGAAAUAGUAUCAAGCUCACCAUG
ACGAAGCCUGUCGCUUGGCGUCUAAUUGGUUAAAUAAAUGAGCGACUAAGCAUGUAGUACCGAGAACGUAGGCUUUUUGG
ACGGGGGUUCGAUUCCCCCCCGCUCCACCA
>Psalt_halop_0336 Pseudoalteromonas haloplanktis tmRNA, version 1 (ends unsequenced) {ATCC14393} U68076:22-334
GGAAUUCAAGAAGCCCGAGGUGCAUGUCGAGGUGCGGUUUGCCUCGUAAAAAAGCCGCAAUUUAAAGUAAUCGCAAACGA
CGAUAACUACUCUCUAGCAGCUUAGGCUGGCUAGCGCUCCUUCCAUGUAUUCUUGUGGACUGGAUUUUGGAGUGUCACCC
UAACACCUGAUCGCGACGGAAACCCUGGCCGGGGUUGAAGCGUUAAAACUAAGCGGCCUCGCCUUUAUCUACCGUGUUUG
UCCGGGAUUUAAAGGUUAAUUAAAUGACAAUACUAAACAUGUAGUACCGACGGUCGAGGCUUUUCGGACGGGG
>Psalt_halo2_0711 Pseudoalteromonas haloplanktis tmRNA, version 2 {TAC125} CR954246:2232366-2232010; NC_007481:2232366-2232010
GGGGCUGAUUAGGAUUCGACGGAAUUCAAGAAGCCCAAGGUGCAUGUCGAGGUGCGGUUUGCCUCGUUAAACAGCCGCAA
CCUAAAGUAAUCGCAAACGACGAUAACUACUCUCUAGCGGCUUAGGCCAGCUAGCGCUCCUUCUAUGUAUUCUUGUGGAC
UAGAUUUUGGAGUGUCACCCUAACACCUGAUCGCGAUGGAAACCCUGGCCGGGGUUGAAGCGUUAAAACUAAGCGGCCUC
GCCUUUAUUUACCGUGUUUGUCCGGGACUUAAAGGUUAAUUAAAUGACAAUACUAAGCAUGUAGUACCGACGGUCGAGGC
UUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Psalt_atlan_0712 Pseudoalteromonas atlantica tmRNA AAKP01000003:198921-198565; NZ_AAKP01000003:198921-198565
GGGGCUGAUUUUGGAUUCGACAAGAUUCUUGAGGCUUUAGGUGCAUGCAGAGGAGCGGUUUGCCUCUUAAAAAGCCGCAU
UUAAAUAGUCGCAAACGACGAAAACUACGCUCUAGCCGCUUAAUAACCGGCUAAGCCCUUCCACUCAUACUCUUUCUGCU
AGUAGAGGUUCGGAAGGUCAUCCCAGCAGAAUAGCGAGGGAACCUUGUCUAAGGGUGAACCGCGAAAUAGUAUUAGGCCC
GCUAUGAGAAAUCCUGUCUGCCGGAGUUCGAAAUAGUUAAAUAAAAGACAGAAUAAGCAUGUAGUACCGACGGUUAACGU
UUUUUGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Shewa_oneid_0337 Shewanella oneidensis tmRNA AE014299:1538496-1538142; NC_004347:1538496-1538142
GGGGGCGAUUCUGGAUUCGACAGGAUUCACGAAACCCUGGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AGUUAUAGUUGCAAACGACGAUAACUACGCUCUAGCCGCUUAAUGCCGCUAGCCAUCUACCACACGCUUUGCACAUGGGC
AGUGGAUUUGAUGGUCAUCUCACAUCGUGCUAGCGAGGGAACCCUGUCUGGGGGUGAACCGCGAAACAGUACCGGACUCA
CCGUGUGGGAUCCUGUCUUUCGGAGUUCAAACGGUUAAACAAUAGAAAGACUAAGCAUGUAGCGCCUUGGAUGUAGGUUU
UCUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Shewa_putre_0616 Shewanella putrefaciens tmRNA AALB01000010:73913-74268; NZ_AALB01000010:73913-74268
GGGGGCGAUUCUGGAUUCGACAGGAUUCACGAAACCCUGGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAC
AGUUAUAGUUGCAAACGACGAUAACUACGCUCUAGCAGCUUAGGCUAGCUAGCCAUCUGACACAGGUCUCUCAAAUGGGC
GGUGUAUACAGAUGGUCAUCUUACAUUUGAUAGCGAGGGAACUCCGUCCGGGGGUGAACCGCGAAAUAGUACCGGACUCG
CCCGAUGAAAUCCUGUCUUUCGGAGUUUAUUCGGGUUAAUUAAAAGAGAGACUAAGCAUGUAGUGCCUUGGAUGUAGGUG
UUCUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Shewa_spPV4_0617 Shewanella PV-4 tmRNA AALS01000007:141603-141958; NZ_AALS01000007:141603-141958
GGGGGCGAUUCUGGAUUCGACAAGAUUCACGAAACCCUAGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAC
AGUUAUAGUUGCAAACGACGAUAACUACGCUCUAGCAGCUUAGGCUAGCUAGCCAUCUUGCUCACGUUUCUCAAAUGGGC
AGAGUAUUAAGAUGGUCACCUUUACAUUUGAUAGCGAGGGAACCAUGUUCAGGGGUGAACCGCGAAACAGUACUGAACUC
GCCAAUAACAAUCCUGUCUUUCGGAGUGUUGUUGGUUAACCAAUAGAAAGACUAAGCAUGUAGCGCCGAGGAUGUAGGCU
UUUUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Shewa_denit_0609 Shewanella denitrificans tmRNA AAIU01000022:28672-29026; NZ_AAIU01000022:28672-29026
GGGGGCGAUUCUGGAUUCGACAGGAUUCACGAAACCCAAGGAGCAUGUCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAC
CGUUAUAGUUGCAAACGACUCUAACUACUCUCUAGCAGCUUAGGCUAGCUAGCCAUCUGACCCAGGUUUCUCAAAUGGGC
GGGGUAUACAGAUGGUCAUAUAACAUUUGAUAGCGAGGGAACUCCGUCCGGGGGUGAACCGCGAAACAGUACCGGACUCG
CCAUGUAGCAUCCUGUCUUUCGGAGACUGCCUGGUUAACUAAAAGAGAGACUAAACAUGUAGCGCCGAGGAUGUAGGCUU
UCUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Shewa_frigi_0713 Shewanella frigidimarina tmRNA AAIV01000026:15795-15440; NZ_AAIV01000026:15795-15440
GGGGGCGAUUCUGGAUUCGACAGGAUUCACGAAACCCAAGGAGCAUGUCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAC
CGUUAUAGUUGCAAACGACUCUAACUACUCUCUAGCAGCUUAGGCUAGCUAGCCAUCAACCACACGUUUCGCACGUGGAC
AGUGGAUUCUGAUGGUCAUAUUACAGUGUGCUAGCGAGGGAACUCCGUCCGGGGGUGAACCGCGAAACAGUACCGGACUC
ACCAAGUAGCAUCCUGUCUUUCGGAGACUGCUUGGUUAAAUAAAAGAGAGACUAAACAUGUAGUGCCGAGGAUGUAGGCU
UUCUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Shewa_amazo_0714 Shewanella amazonensis tmRNA AAIN01000003:136255-136610; NZ_AAIN01000003:136255-136610
GGGGGCGAUUCUGGAUUCGACGGGAUUCGCGAAACUCCGGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AGUUAUAGUUGCAAACGACGAUAACUACGCUCUGGCUGCUUAAUUAGCGCCAGCCAUCUACCACAGGUCUCGCACAUGGG
CAGUGGAUUUGAUGGUCACCUUACAUCGUGCUAGCGAGGGAACCUUGUCUGGGGGUGAACCGCGAAACAGUUCCAGGCUC
ACCGUUAGAAAUCCUGUCUUUCGGAGUUCGAGCGGUUAAAUAAAAGAGAGACUAAGCAUGUAGCGCCUUGAGCGUAGGUU
UUUCGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Shewa_balti_0715 Shewanella baltica tmRNA AAIO01000026:8190-8545; NZ_AAIO01000026:8190-8545
GGGGGCGAUUCUGGAUUCGACAGGAUUCACGAAACCCUGGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAC
CGUUAUAGUUGCAAACGACUCUAACUACUCUCUAGCAGCUUAGGCUAGCUAGCCAUCUGACACAGGUCUCUCAAAUGGGC
AGUGUAUACAGAUGGUCAUCCUACAUUUGAUAGCGAGGGAACUCCGUCCGGGGGUGAACCGCGAAAUAGUACCGGACUCG
CCCGAUGAAAUCCUGUCUUUCGGAGUUUAUUCGGGUUAAUUAAAAGAGAGACUAAGCAUGUAGUGCCUUGGAUGUAGGUG
UUCUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Shew_SAR1_1_0626 Shewanella SAR-1 tmRNA, version 1 AACY01043347:19837-19483
GGGGGCGAUUCUGGAUUCGACAGGAUUCACGAAACCCUGGGAGCAUGCCGAGGGGCGGUUGGCCUCGUUAAAAGCCGCAA
AGUUAUAGUUGCAAACGACGAUAACUACGCUCUAGCCGCUUAAUGCCGCUAGCCAUCUACCACACGCUUCGCACAUGGGC
AGUGGAUUUGAUGGUCAUCUCACAUCGUGCUAGCGAGGGAACCCUGUCCGGGGGUGAACCGCGAAACAGUACCGGACUCA
CCGUUUGGGAUCCUGUCUUUCGGAGUUCAAACGGUUAAACAAUAGAAAGACUAAGCAUGUAGCGCCUUGGAUGUAGGUUU
UCUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Shewan_ANA3_0627 Shewanella ANA-3 tmRNA AACY01092819:194-548; AACY01092821:1413-1767; AALH01000007:79675-79321; NZ_AALH01000007:79675-79321
GGGGGCGAUUCUGGAUUCGACAGGAUUCACGAAACCCUGGGAGCAUGCCGAGGGGCGGUUGGCCUCGUUAAAAGCCGCAA
AGUUAUAGUUGCAAACGACGAUAACUACGCUCUAGCCGCUUAAUGCCGCUAGCCAUCUACCACACGUUUCGCACAUGGGC
AGUGGAUUUGAUGGUCAUCUCACAUCGUGCUAGCGAGGGAACCCUGUCCGGGGGUGAACCGCGAAACAGUACCGGACUCA
CCGUGUGGGAUCCUGUCUUUCGGAGUUCAAACGGUUAAACAAUAGAAAGACUAAGCAUGUAGCGCCUUGGAUGUAGGUUU
UCUGGACGCGGGUUCAAGUCCCGCCGCCUCCACCA
>Uncult_WW11_0338 Uncultured pondWW11 tmRNA (ends unsequenced) AF389985:20-331
ACAGGAUUCACGAAACCCUGGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCACAGUUAUAGUUGCAAACGAC
GAUAACUACGCUCUAGCAGCUUAGGCUAGCUAGCCAUCUGACACAGGUCUCUCAAAUGGGCGGUGUAUACAGAUGGUCAU
CUUACAUUUGAUAGCGAGGGAACUCCGUCCGGGGGUGAACCGCGAAAUAGUACCGGACUCGCCCGAUGAAAUCCUGUCUU
UCGGAGUUUAUUCGGGUUAAUUAAAAGAGAGACUAAGCAUGUAGUGCCUUGGAUGUAGGUGUUCUGGACGCG
>Idiom_loihi_0339 Idiomarina loihiensis tmRNA AE017340:1771213-1770855; NC_006512:1771213-1770855
GGGGCUGAUCUGGAUUCGACGGGAUACACGAAACCCAAGGUGCAUGCCGAGGUGAGGCAGGCCUCGUAAAAAGCCUCAAC
CUAAUAGUUGCAAACGACGACAACUACGCUCUAGCGGCUUAAUAACCCGCUAAGCCCAUCCCCCGGCGCUUUGUCUGCGA
GACCGGACCAGGAUGGCUCAAACUAAUGUAGACUCGCGUGGAGGCUUUGUCCGGAGCUGAAGCGUUAAAACCAAUCGGAC
UCGUCAGUUGUGAAGCCUGUCAGUCGGCGUCACACUGAUUAACUAAAAGACUGACUAAGCAUGUAGGACCGAGGAUGUAG
GUAUUGCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Phobm_phosp_0340 Photobacterium phosphoreum tmRNA (ends unsequenced) AY040837:1-325
AGGAUCACGAAGGCUUGUGGAGCAUGUCGAGGUGCGGUUUGCCUCGUUAAACAGCCGCAAAAAAAUAGUCGCAAACGACG
AAAACUACGCACUAGCAGCUUAAUACCCUGCUAAGAGCGCUCCUGCCCUAGCUUCCGCUUGUAAGACGGGGAAUAACAGG
GGUUCAAACCCAAACGAGAUAGCGAGGGAUUCUUUGACUAGAGAGAUGAACCGCGAAAUAGAAUUCUGGUAUGUAUUAGC
AUAGCGUGUCAAUUCGCAGUGACGAUACGAGAAUAAAGAUUGACUAAACAUGUAGCGCCAUCUGUUAGACUGAUUUUGGA
CGCGG
>Phobm_profu_0341 Photobacterium profundum tmRNA CR378665:70600-70233; NC_006370:766538-766171
GGGGCUGAUUCAGGAUUCGACAGGAUCAAGAAGGCUUGUGGAGCAUGCCGUGGGGCGGUUGGCCACGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUUCGCACUAGCAGCUUAAUAACCUGCUAGCGCACUUCUACCCUAGCUUCCGCUUG
UAAGACGGGGAAUCAUAGAAGUUCAAACCCAAACGAGAUAGCGAGGGAACCUUUGACUAGAGAGGUGAACCGCGAAAUAG
AAUUCUGGUAUGUAUUUACAUGGCGUGUCUGUUCGCAGUGUACUUACGAGAAUAAAGAUAGACUAAGCAUGUAGCGCCUA
UGGUUGGAUUGCUCUUGGACGCGGGUUCAAAUCCCGCCAGCUCCACCA
>Vibro_fisch_0342 Vibrio fischeri tmRNA CP000020:2243112-2243478; NC_006840:2243112-2243478
GGGGCUGAUUCAGGAUUCGACGGGAAUUUUGAAACCCGAGGAGCAUGUCGUGGGGCGGUUGGCCACGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUACGCACUAGCAGCUUAAUAACCUGCUGAGAGCUCUCCUGCCCUAGCUUCUGCUU
GUAAGACGGGGAAUAACAGGGGAUCAAACCCAAACGAGCUAGAACGGAUUCUCCCGCCUGAGAGAUGAACUUCGAAUUAU
AAUUCAGGAUAGCCAUAAGAUAGCGUGUCGGUUCGCAGUUUUACGGUGAAAUCAAAGAUCGACUAAACAUGUAGCGCCAA
CGGUGAACGAUUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Vibro_chole_0343 Vibrio cholerae tmRNA, version 1 U39068:12723-12357; U02372:1-132; AE004170:3459-3093; NC_002505:914657-914291; AAKF01000001:41564-41930; NZ_AAKF01000001:41564-41930; AAKG01000001:405399-405033; NZ_AAKG01000001:405399-405033; AAKH01000103:5308-5674; NZ_AAKH01000103:5308-5674; AAKJ01000029:5715-6081; NZ_AAKJ01000029:5715-6081
GGGGCUGAUUCAGGAUUCGACGGGAAUUUUGCAGUCUGAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCA
AAAAAAUAGUCGCAAACGACGAAAACUACGCACUAGCAGCUUAAUACCCUGCUCAGAGCCCUUCCUCCCUAGCUUCCGCU
UGUAAGACGGGGAAAUCAGGAAGGUCAAACCAAAUCAAGCUGGCGUGGAUUCCCCCACCUGAGGGAUGAAGCGCGAGAUC
UAAUUCAGGUUAGCCAUUCGUUAGCGUGUCGGUUCGCAGGCGGUGGUGAAAUUAAAGAUCGACUAAGCAUGUAGUACCAA
AGAUGAAUGGUUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCA
>Vibro_chol2_0716 Vibrio cholerae tmRNA, version 2 (5-prime end unsequenced) {V51} AAKI01000308:1-145; NZ_AAKI01000308:1-145
GGGAUGAAGCGCGAGAUCCAAUUCAGGUUAGCCAUUCGUUAGCGUGUCGGUUCGCAGGCGGUGGUGAAAUUAAAGAUCGA
CUAAGCAUGUAGUACCAAAGAUGAAUGGUUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCA
>Vibro_sEx25_0717 Vibrio Ex25 tmRNA AAKK01000005:7330-7697; NZ_AAKK01000005:7330-7697
GGGGCUGAUUUAGGAUUCGACGGGAAUUCAGAAGUCUGAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCA
AAAAAAUAGUCGCAAACGACGAAAACUACGCACUAGCAGCUUAAUAACCUGCUCAGAGCUCUCUCGCCCUAGCUUCCGCA
CGUAAGACGGGGAAUAACGAGGGAUCAAACCCAAACGCGCUAGCCCGGAUUCUCCCGCCUGAGAGAUGAACGGCGAAUUU
UAAUUCAGGCUAGUCAUUCAUUAGCGUGUCGGUUCGCAGGUGGGUGGCGAAAUUAAAGAUCGACUAAGCAUGUAGUACCA
AUGAUGAACGGUUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Vibro_parah_0344 Vibrio parahemolyticus tmRNA BA000031:674768-674401; NC_004603:674768-674401
GGGGCUGAUUUAGGAUUCGACGGGAAUUCAGAAGUCUGAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCA
AAAAAAUAGUCGCAAACGACGAAAACUACGCACUAGCAGCUUAAUACCCUGCUCAGAGCUCUCUCGCCCUAGCUUCCGCA
CGUAAGACGGGGAAUAACGAGAGAUCAAACCCAAACGCGCUAGCCCGGAUUCUCCCGCCUGAGAGAUGAACGGCGAAUUA
UAAUUCAGGAUAGUCAUUCAUUAGCGUGUCGGUUCGCAGGUGGAUGGUGAAUUUAAAGAUCGACUAAGCAUGUAGUACCA
AUGAUGAAAGGUUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Vibro_vulni_0345 Vibrio vulnificus tmRNA AE016795:355133-355499; NC_004459:355133-355499; BA000037:823422-823056; NC_005139:823422-823056
GGGGCUGAUUUAGGAUUCGACGGGAAUUUUGCAGUCUGAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCA
AAAAAAUAGUCGCAAACGACGAAAACUACGCACUAGCAGCUUAAUAAACUGCUCAGAGCCCUCUCGCCCUAGCUUCCGCU
UGUAAGACGGGGAAUCACGAGGGGUCAAACCAAAUCAAGCUGGCGUGGAUUCCCCCACCUGAGGGAUGAAGCGUAAGAUA
UAAUUCAGGUUAGCUAUUCAUUCGCGUGUCGGUUCGCAGGUGGUAGUGAAAUUAAAGAUCGACUAAGCAUGUAGUACCAA
UGAUGAAUGGUUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Aermo_hydr1_0346 Aeromonas hydrophila tmRNA, version 1 {PPD134/91} AY442269:10-369
GGGGCUGAUUCUGGAUUCGACAAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGCUAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAAAACUACGCACUGGCAGCUUAAUAACCUGCGCAGAGCCCUUCUACCCUAGCAUGCCUG
UGUCCUAGGGAAUCGGAAGGUCAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAAUCGA
GCUAGUCAAUUCGUGGCGUGUCUCUCCGCAGCGGGUUGGCGAAUGUAAAGAGUGACUAAGCAUGUAGUGCCAAGGAUGUA
GUAAUUUUGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Aermo_hydr2_0347 Aeromonas hydrophila tmRNA, version 2 {ATCC 7966} AACY01058472:1442-1083
GGGGCUGAUUCUGGAUUCGACAAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAAAACUACGCACUCGCAGCUUAAUAACCUGCGCUGAGCCCUUCUACCCUAGCUUGCCUG
UGUCCUAGGGAAUCGGAAGGUCAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAAUCGA
GCUAGUCAAUUCGUGGCGUGUCUCUCCGCAGCGGGUUGGCGAAUGUAAAGAGUGACUAAGCAUGUAGUGCCAAGGAUGUA
GUAAUUUUGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Aermo_salmo_0348 Aeromonas salmonicida tmRNA (ends unsequenced) U68075:22-336; AF440330:1-315; AY364898:1-315; AY364895:1-315; AY364896:1-307; AY364899:1-305; AY364897:1-298
AAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCAAAAAAAUAGUCGCAAACGACG
AAAACUACGCACUAGCAGCUUAAUAACCUGCAUAGAGCCCUUCUACCCUAGCUUGCCUGUGUCCUAGGGAAUCGGAAGGU
CAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAAUCGAGCUAGUCAAUUCGUGGCGUGU
CUCUCCGCAGCGGGUUGGCGAAUGUAAAGAGUGACUAAGCAUGUAGUACCGAGGAUGUAGUAAUUUUGGACGGGG
>Uncult_VLW3_0349 Uncultured creekVLW3 tmRNA (ends unsequenced) AF389968:20-335; AF389969:21-336; AF389970:20-335; AF389972:20-335; AF389971:20-335
ACAAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCAAAAAAAUAGUCGCAAACGA
CGAAAACUACGCACUCGCAGCUUAAUAACCUGCGCUGAGCCCUUCUACCCUAGCUUGCCUGUGUCCUAGGGAAUCGGAAG
GUCAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAAUCGAGCUAGUCAAUUCGUGGCGU
GUCUCUCCGCAGCGGGUUGGCGAAUGUAAAGAGUGACUAAGCAUGUAGUACCGAGGAUGUAGUAAUUUUGGACGGG
>Uncul_VLS13_0350 Uncultured pondVLS13 tmRNA (ends unsequenced) AF389973:21-336
ACAAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCAAAAAAAUAGUCGCAAACGA
CGAAAACUACGCACUCGCAGCUUAAUAACCUGCGCUGAGCCCUUCUACCCUAGCUUGCCUGUGUCCUAGGGAAUCGGAAG
GUCAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAAUCGAGCUAGUCAAUUCGUGGCGU
GUCUCUCCGCAGCGGGUUGGCGAAUGUAAAGAGUGACUACGCAUGUAGUACCGAGGAUGUAGUAAUUUUGGACGGG
>Uncultu_WW9_0351 Uncultured pondWW9 tmRNA (ends unsequenced) AF389974:20-335
ACAAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCAAAAAAAUAGUCGCAAACGA
CGAAAACUACGCACUCGCAGCUUAAUAACCUGCGCUGAGCCCUUCUACCCUAGCUUGCCUGUGUCCUAGGGAAUCGGAAG
GUCAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAAUCGAGCUAGUCAAUGCGUGGCGU
GUCUCUCCGCAGCGUGUUGGCGAAUGUAAAGAGUGACUAAGCAUGUAGUACCGAGGAUGUAGUAAUUUUGGACGGG
>Uncult_WW10_0352 Uncultured pondWW10 tmRNA (ends unsequenced) AF389975:20-335
ACAAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCAAAAAAGUAGUCGCAAACGA
CGAAAACUACGCACUCGCAGUUUAAUAACCUGCGCUGAGCCCUUCUACCCUAGCUUGCCUGUGUCCUAGGGAAUCGGAAG
GUCAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAAUCGAGCUAGUCAAUGCGUGGCGU
GUCUCUCCGCAGCGUGUUGGCGAAUGUAAAGAGUGACUAAGCAUGUAGUACCGAGGAUGUAGUAAUUUUGGACGGG
>Uncult_VLW5_0353 Uncultured creekVLW5 tmRNA (ends unsequenced) AF389976:19-332
GCAAGAUUCACGAAACCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCACUCGCAGCUUAAUAACCUGCGCUGAGCCCUUCUCCCCUAGCUUGCCUGUGUCCUAGGGAAUUGGAAGG
UCAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAAUCGAGCUAGUAAUGCGUGGCGUGU
CUCUCCGCAGCGUGUUGGCGAAUGUAAAGAGUGACUAAGCAUGUAGUACCGAGGAUGUAGUAAUUUUGGACGGG
>Uncult_VLW6_0354 Uncultured creekVLW6 tmRNA (ends unsequenced) AF389977:34-349
ACAAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCAAAAAAAUAGUCGCAAACGA
CGAAAACUACGCACUCGCAGCUUAAUAACCUGCGCUGAGCCCUUCUCCCCCAGCUUGCCUGUGUCCUAGGGAAUUGGAAG
GUCAUCCUUCACAGGAUCGUGUGGAAGUCCUGCUCGGGGCGGAAGCAUUAAAACCAUUCGAGCUAGUCAAUGCGUGGCGU
GUCUCUCCGCAGCGUGUUGGCGAAUGUAAAGAGUGACUAAGCAUGUAGUACCGAGGAUGUAGUAAUUUUGGACGGG
>Uncult_RCA4_0355 Uncultured cactusRCA4 tmRNA (ends unsequenced) AF389978:20-335; AF389979:20-335; AF389980:20-335
ACGGGACACUCGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAAUAAACCGCAAAAAAUAGUCGCAAACGAC
GAAACCUACGCUUUAGCAGCUUAAUAACCUGCUCGGAGCCCUUCUACCCUAGCUUGCCUAUGUCCUAGGGGAUUGGAAGG
UCAUCUUUCAUAGGAUCGCGUGGAAACCUUGUCUGGGGUGGAAGCGUUAAAACUAAUCAGACUAGUUAUUCAGUGGCGUG
UCGGUCCGCAGCUGGAUGGUGAAUGUAAAGAUUCGACUAAGCAUGUAGUACUGAGGAUGUAGGUUUUUCGGACGCG
>Uncult_RCA7_0356 Uncultured cactusRCA7 tmRNA (ends unsequenced) AF389981:20-334
ACGGGACACUCGAAACCCAAGGUGCAUGCCGAGGUCGGUAGGCCUCGUUAAUAAACCGCAAAAGAUAGCCGCAAACGACG
AAACCUACGCUUUAGCAGCUUAAUAACCUGCUCGGAGCCCUUCUACCCUAGCUUGCCUAUGUCCUAGGGGAUUGGAAGGU
CAUCUUUCAUAGGAUCGCGUGGAAACCUUGUCUGGGGUGGAAGCGUUAAAACUAAUCAGACUAGUUAUUCAGUGGCGUGU
CGGUCCGCAGCUGGAUGGUGAAUGUAAAGAUUCGACUAAGCAUGUAGUACUGAGGAUGUAGGUUUUUCGGACGCG
>Uncult_LEM1_0357 Uncultured lakeLEM1 tmRNA (ends unsequenced) AF389983:19-334; AF389982:20-335
ACGGGACACUCGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAAUAAACCGCAAAAAAUAGUCGCAAACGAC
GAAACCUACGCUUUAGCAGCUUAAUAACCUGCUCGGAGCCCUUCUACCCUAGCUUGCCUAUGUCCUAGGGGAUUGGAAGG
UCAUCUUUCAUAGGAUCGCGUGGAAGCCUUGUCUGGGGUGGAAGCGUUAAAACUAAUCAGACUAGUUAUUCAGUGGCGUG
UCGGUCCGCAGCUGGGUGGCGAAUGUAAAGAUUCGACUAAGCAUGUAGUACUGAGGAUGUAGGUUUUUCGGACGCG
>Uncult_LEM2_0358 Uncultured lakeLEM2 tmRNA (ends unsequenced) AF389984:20-334
ACGGUACACUAGAAAACCAAGGUGCAUACCGAGGUGCGGUAGCCUUCGUUAAUAAACCGCAAAAGAUAGUCGCAACGACG
AAACGCACGCUUUAGCAGCUUAAUAUGCUGCUAGGACUCCUUCUNNACUAGCUUGCUUAUGUCCUAGGGGAUUGAAAGGU
CAUCUUUCAUAGAGACGCGUGGAAGCCCUGUCUGGGGUGGAAGCGUCAAAACUAAUCAGGCAAGUUAUGCAAUGGCGUGG
CGGACCGGAGCUGGGUGGCGAAUGGAAAGAUUCGACUAAGCAUGUAGUACUGAGGAUGUAGUAUUUUCGGACGCG
>Wiggl_gloss_0359 Wigglesworthia glossinidia pre-tmRNA BA000021:122211-122575; NC_004344:122211-122575
GGGGCUGAUUAUGGAUUCGACGAAAUAAACAAAACUAAAGAUGCAUGUCGAGCAGAGGUGGACUCGUAAAACCUCAAAUU
GAUAAUUGCAAAACAUAAGUACAACGAGCCUGCUCUAUUAGCAGCUUAAUUAGAAUAAAAUCUUAGGCUCCUUCUUAGAU
AUAUUAUCUCUAGAUGUAUCAAUAGAAGUCAAAAUUAGAGAUCGCGAUAUGAACGGGCUUGUACGUUCCUACGCUAAAAU
AAUACAAGAUAAUUUUUAGUUCACACUUCUUUCUGUAGAACUAAAAAUAUUUAAGAAAGAAUAAACAUGUAGUAUCAAUA
GAAUUGAAGUUUCGGACGCGGGUUCAAAUCCCGCCAGCUCCAuau
>Bloch_flori_0360 Blochmannia floridanus pre-tmRNA BX248586:93694-94086; NC_005061:610694-611086
GGGGCUGAUUUAGGUUUCGACUGAAUGUCUUUGUGUUUGCAGUGCAUGUCGAGGGGAGAUAGGCCUCGUAAAAAAAUCUC
AAAAAAUAAUUGCAAAAAAUAAAUAUAAUGAACCUGUUGCAUUAGCAGCUUAAUUGGGUUAAUAACCUAAAGGUUCCCUC
UUAAUUUUUUUGUUACUCUUAACAAGAAAAUCAUUAUCUCAUAAGAGGUCUAUAAAUAAGAGCGCUCAUUAUAAAGUGCC
UAACUCUAUAAUGAUAAGAAUAAAAAUUAGAGCUAAUUGAUUAAUUGACAUGAUCUUAAGUCAUUUUUCAAUAAAAUAUU
AAAGAUCUAAACAUGUAGUAUCUGGAAAAUAUAAGAAUUCUGGACGCGGGUUCGAAUCCCGCCAGCUCCAuuu
>Bloch_penns_0718 Blochmannia pennsylvanicus tmRNA CP000016:678009-678400; NC_007292:678009-678400
GGGGCUGAUUUUGGAUUCGACGGAGUAUCUUGUUAUUUAAAGUGCAUGCCGAGGUGAGGCAGGCCUCGUAAAAAGCCUCA
AAAGAUAAAUGCAAAUAAUACUACAUAUAGAGAAUCUGUUGCUUUAGCAGCUUAAAUCAGACUAAUAUUCUGAAGGUUCC
CUCUCGUUUCAAUAUUUACUCUUAGAUAUUAAAAAAUAAAUAGAGAGGCCAUAUAAAUAAGAGUGCGCGUAAAUGCUUGC
UUUUGGCUUAACGUUAAGUAUAAAAAGCUAGUUGGUUAGUGAUUGGUCUUGAUAUAUCUACGCCAAUUAAAUGUAAUUCA
AGACCUAAGCAUGUAGGUUACUAAAAAUAAAAAGAAUUCUGGACGCGGGUUCGAACCCCGCCAGCUCCACCA
>Uncul_aphi1_0736 Uncultured aphid1 tmRNA DV750727:1-95; DV751908:1-94; DV750025:1-94; DV748737:1-94; DV748085:1-94; DV747796:1-94; DV751332:1-94; DV750760:1-93; DV749484:1-94; DV749388:1-94; DV748840:1-94; DY227688:1-85; DV748071:1-94; DV751532:1-88; DV747721:1-88; DV750846:1-88; DV747623:1-88; DV750776:1-88; DV750449:1-88; DV749349:1-88; DV747775:1-88; DV749512:1-87; DV748561:1-88; DV748517:1-88; DV747629:1-88; DV749072:1-86; DV751765:1-85; DV749068:1-85; DV751320:1-85; DV750211:1-85; DV748868:1-85; DV750788:2-85; DV750015:3-74; DV748472:1-94
GGGGCUGAUUCUGGAUUCGACGGGAUAAGCAAAGCCCAAGGUGCAUGCCGAGGGGCGGUUGCCUCGUAAAAAACCGUGAA
AAAAUAGU
>Uncul_aphi2_0737 Uncultured aphid2 tmRNA DW011176:1-230; DW013355:1-299
GGGGCUGUUUUUGGAUUUGACAAAAUUAUCAACAGAGUAAAGUGCAUGCCGAGGAACGGUUUGCCUCGAUAAAAGCCGUA
AAAUAAUAGCUGCAAAUAAUAAACAACACUACGCUUUAGCAGCUUAAAAAACUGUAUAAAGCCCUUUCUUCUCAGCCUCC
UCUCUUAGGACGAGAAAUAAAGAAAGGUCAAAAAAAGAGAAAAACAUGAACAUCAAGCUUGACGAUGACAUG
>Buchn_aphi1_0361 Buchnera aphidicola pre-tmRNA, version 1 {APS} BA000003:202977-202609; BD061520:202977-202609; AR409405:202977-202609; NC_002528:202977-202609; CN752701:1-290; CN750153:1-303X; CN753166:1-304X; DV739631:1-304X; DV741509:1-303X; DY230073:1-105; DY229286:1-104
GGGGCUGUUUUUGGAUUUGACAAAAUUAUCAACAAAGUAAAGUGCAUGCCGAGGAACGGUUUGCCUCGAUAAAAGCCGUA
AAAAAAUAAUUGCAAAUAAUAAACAAAACUACGCUUUAGCAGCUUAAAAAACUGAAUAAAGCCCUUCCUUCUUAUCCUCC
UUCUCUUAGGAUGAGAAAACAGGAAGGUCAGAAAAAGAGAAAAACGUGGAUAUCAAGCUUGACGAUAACACGAAGUAGUU
UUUUCAAGCUAUAUACCUAAUAUGUGUUUUUCCAAAUUAGGUAAUGAAUUCAAUAAAGAAAAAACUAAGCAUGUAGGGCU
UUAUUAGUAGAAAUUUUGGACGCGGGUUCGAAUCCCGCCAGCUCCAaaa
>Buchn_aphi2_0362 Buchnera aphidicola pre-tmRNA, version 2 {Sg} AE013218:203736-203361; NC_004061:203736-203361
GGGGCUGUUUUUGGAUUCGACAAAGUUAUCAAAAAAGUAAAGUGCAUGCCGAGGAACGGUUUGCCUCGAUAAAAAACCGU
AAAAAAAUAGCUGCAAAUAAUAAACAAAACUACGCUUUAGCAGCUUAAAAAACUGUAUAAAGCCCUUUCAUCUCUGACUU
CUCUCUUGAGAACGAGAAAUUUUUAAGAAAGGCCGACAUUUAAAGAGAAAAAUGUGAGCACUAUGCUUGAUAGUGACACA
AAAUUAAUUUUUCAAGCUAUAAGCUUAAAAUGAGUUUUUCCAAAUUAAGCAAUGAAAAAAUAAAGAAAAACUAAGCAUGU
AGUAUCUUUAUUUAUAGAAAUUUUGGACGCGGGUUCAAAUCCCGCCAGCUCCAaaa
>Buchn_aphi3_0363 Buchnera aphidicola pre-tmRNA, version 3 {Bp} AE016826:200304-199938; NC_004545:200304-199938
GGGGCUGAUAUUGGAUUUGACAAAAUUAUUGAAAACUGAUGUGCAUGCCGAGGAUGGUUUGCCUCGUUAAAAAACCAUAA
AAAAUAGUAGCAAAACAAAAUCAAUACGCUUUAGCAGCUUAAUAAUCUGAAUAAAGCCCUUCUUUUAAACAUAUUCUCUU
AAUGUUUAAUUUAUAUAGAAGGUUAAUCUAAAGAGAUCGCAACUCAAAUCUAUUUUGAAAGAUUUUUUGUUGCUAAAUAA
AAACUUCAAAAUAUAUAUCUAUAAUGAGUCUAUACAUCGAUAGAUAAGAAAAGAUAAUAGACUAAGCAUGUAGUAUCUGA
AGUCGUAAAAAUUUUGGACGCGGGUUCGAAUCCCGCCAGCUCCAaaa
>Phorh_asymb_0364 Photorhabdus asymbiotica tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUUGCAAACGACAACGAAUACGCACUAGUAGCUUAAUAACCUGCAUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGGGAGGUCAAACCUAAAAGAGAUCGCGUGGAUGCCUUGCCUGGGGUUGAAGCGUUAAAUCUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCUAUCCGCAGCUGGCAAGUGAAUGUAAAGAUUAGACUAAGCAUGUAGUACCAAGGA
UGUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Phorh_lumin_0365 Photorhabdus luminescens tmRNA BX571870:186841-187204; AX770909:307914-307551; NC_005126:4006061-4006424
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAAAUACGCACUAGCAGCUUAAUAACCUGCGCAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCUUGCCUGGGGUUGAAGCGUUAAAUCUAAU
CAGGCUAGUUUGUGAGUGGCGUGUCUGUCCGCAGCUGGCAAGCGAAUGUAAAGAUUAGACUAAGCAUGUAGUACCAAGGA
UGUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Shige_dyse1_0366 Shigella dysenteriae tmRNA, version 1 {M131649} CP000034:2587105-2587467; NC_007606:2587105-2587467
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAC
GUAGGAAUUCCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Shige_dyse2_0726 Shigella dysenteriae tmRNA, version 2 {1012} AAMJ01000009:124706-124344; NZ_AAMJ01000009:124706-124344
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAC
GUAGGAAUUCCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Shige_boydi_0695 Shigella boydii tmRNA AAKA01000034:22499-22137; NZ_AAKA01000034:22499-22137; CP000036:2764363-2764725; NC_007613:2764363-2764725
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAC
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Shige_flexn_0367 Shigella flexneri tmRNA AE005674:2754133-2754495; NC_004337:2754133-2754495; AE014073:2748766-2749128; NC_004741:2748766-2749128
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Shige_sonne_0368 Shigella sonnei tmRNA CP000038:2901772-2901410; NC_007384:2901772-2901410
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Esche_coli1_0369 Escherichia coli tmRNA, version 1 {K12, DH10B, K1} X16382:152-514; D12501:1355-1717; U03737:1-92; S69243:1-91; U36840:4547-4909; U00096:2753615-2753977; NC_000913:2753615-2753977; U68074:1-363; AP009048:2754249-2754611; AF177910:470-533; AF440334:1-310; AJ304858:47204-46842; AJ831374:5962-5715; AAAA02044339:3223-3266; BF635364:1-34; AG020186:570-208; CL691437:491-129X; CL664753:735-910X; CL665684:169-1X; CL665807:169-1X; AAKB01000016:74768-75130; NZ_AAKB01000016:74768-75130; AAJV01000039:39469-39107; NZ_AAJV01000039:39469-39107; AAJU01000006:9049-9411; NZ_AAJU01000006:9049-9411; AAJW01000050:22507-22145; NZ_AAJW01000050:22507-22145; AAJT01000024:4647-5009; NZ_AAJT01000024:4647-5009; AAJX01000011:7549-7911; NZ_AAJX01000011:7549-7911; AAJY01000001:2795869-2796231; NZ_AAJY01000001:2795869-2796231; AAHY01773677:1-245; AAMI01000451:217-165; AAMK01000028:39572-39210; NZ_AAMK01000028:39572-39210
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Esche_coli2_0370 Escherichia coli tmRNA, version 2 {CFT073} AE014075:3018179-3018541; NC_004431:3018179-3018541
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCACAGCUGGCAAGCGAAUGUAAAGACURACUAAGCAUGUAGUACCGAGGAU
GUAGAAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Esche_coli3_0371 Escherichia coli tmRNA, version 3 {O157_H7, 042} AE005174:3545451-3545813; NC_002655:3545451-3545813; BA000007:3475602-3475964; NC_002695:3475602-3475964; AC171136:14618-14256
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAC
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Esche_coli4_0719 Escherichia coli tmRNA, version 3 {E24377A} AAJZ01000001:688997-689359; NZ_AAJZ01000001:688997-689359
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGAUGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Entbr_cloac_0372 Enterobacter cloacae tmRNA (ends unsequenced) AY491434:1-319
GGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUUGCCUCGUUAAAAGCCGCAAAAAAAUAGUCGCAAACGACGA
AAACUACGCUUUAGCAGCUUAAUAACCUGCUCUGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGAUGGGGAUCAAAGAGA
GGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUAAUCAGGCUAGUUCGUUAGUGGC
GUGUCUGUCCGCAGCUGGCGUGCGAAUGUAAAGACAAACUAAGCAUGUAGUACCGAGGAUGUAGAAAUUUCGGACGCGG
>Entbr_aerog_0373 Enterobacter aerogenes tmRNA (ends unsequenced) AY491435:1-318
GGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGACGA
AAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAG
GUCAAACUCAAAAGAGAUCGCGCGGAUGCCCUGCCUGGGGUUGAAGUGCUAAAACUAAUCAGGCUAGUUCGUUAGUGGCG
UGUCUGUCCGCAGCUGGCGUGCGAAUGUAAAGACAAACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCGG
>Entbr_sakaz_0615 Enterobacter sakazakii tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAACUAAU
CAGGCUAGUCUGGUAGUGGCGUGUCCGUCCGCAGCUGCCAGGCGAAUGUAAAGACCGGACUAAGCAUGUAGUACCGAGGA
UGUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Provi_rettg_0374 Providencia rettgeri tmRNA (ends unsequenced) AF440353:1-310; AX048553:1-310; AX048552:1-310
GGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGACGA
AAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCUUGGACGGGGAUCAAGAGAGG
UCAAACCCAAAAGAGAUCGCGUGGAUGCCUUGCCUGGGGUUGAAGCGUUAAACUUAAUCAGGAUAGUUUGUUGGUGGCGU
GUCUGUCCGCAGCUGGCAAAUGAAUUCAAAGACUAGACUAAGCAUGUAGUACCGAGGAUGUAGAAAUUUC
>Serra_marc1_0375 Serratia marcescens tmRNA, version 1 (ends unsequenced) {BH} AY911527:1-319
GGGAUUUGCGAAGCCCUAGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGACGA
AAACUACGCUUUAGCAGCUUAAUACCCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAG
GUCAAACCCAAAAGAGAUCGCGUGGACGUCCUGCCUGGGGCUGAAGCGUUAAACUCAAUCAGGCUAGUCUGUCAGUAGCG
UGUCCAUCCGCAGCUGGCCGGCGAAUGUAAAGAUUGGACUAAGCAUGUAGUGCCGACGGUGUAGUAAUUUCGGACGGGG
>Serra_marc2_0376 Serratia marcescens tmRNA, version 2 {Db11} AAAA02039738:1593-1956
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAGCCCUAGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUACCCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGUCCUGCCUGGGGCUGAAGCGUUAAACUCAAU
CAGGCUAGUCUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGCGAAUGUAAAGAUUGGACUAAGCAUGUAGUGCCGACGG
UGUAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Panto_stewa_0377 Pantoea stewartii tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUGUGAAGCCUUAGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUGAGAGCCCUCUCUCCCUAGCCUCCACUCU
UAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGCGUUAAACUUAAUC
AGGCUAGUCUGUCAGUGGCGUGUCCGUCCGCAGCUGACCGGCGAAUGUAAAGACUGGACUAAGCAUGUAGUGCCGACGGU
GUAGUAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Prots_mirab_0378 Proteus mirabilis tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAGAUAGUCGCAAACGACAAUCAAUAUAAAGCACUAGCAGCUUAAUAACCUGCCUAGAGCCUUCUCUCCCUAGCUUCCG
CUCUUAAGACGGGGAUAAAGAGGAGUCAAACCCAAAAGAGAUCGCGUGGAUGCCUAGCUUGGGGUUGAAGCGUUAAAUUU
AAUCAAGCUAGCUUAUUUGUGGCGUGUCUGUCCGCAGCAAGUAAGUGAAUUUAAAGACUAGACUAAGCAUGUAGUGCCGC
GGAUGUAGAAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Prots_vulga_0379 Proteus vulgaris tmRNA (ends unsequenced) AY846304:1-321
GGAAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAGAUAGUCGCAAACGACAA
UCAGUACGAAGCACUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGA
GAGGUCAAACCCAAAAGAGAUCGCGUGGAAACCUAGCUUGGGGUUGAAGCGUUAAAUAUAAUCAAGCUAGCUUAUUUGUG
GCGUGUCUGUUCGCAGCAAGUAAGUGAAAUUAAAGACAGACUAAGCAUGUAGUGCCGCGGAUGUAGGAAUUUCGGACGGG
G
>Klebs_pneum_0380 Klebsiella pneumoniae tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUCUGAGCCCUCUCUCCCUAGCUUCCGCUCU
UAAGACGGGGAUCAAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAUCUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCUGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUGCCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Klebs_aerog_0667 Klebsiella aerogenes tmRNA (ends unsequenced) AX048500:1-312; AX048501:1-312
GGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGACGA
AAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCCUAAGACGGGGAAUAAAGAGA
GGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUAAUCAGGCUAGUUUGUCAGUGGC
GUGUCCGUCCGCAGCUGGCCAGCGAAUGUAAAGACUGGACUAAGCAUGUAGUGCCGAGGAUGUAGGAAUUUC
>Erwin_carot_0381 Erwinia carotovora tmRNA BX950851:927307-926945; NC_004547:927307-926945
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCAAAGCCCAAGGUGCAUGCCGAGGGGCGGUUUGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGGGCUAAAUCUAAU
CAGGCUAGUUUGUUAGUGGCGUGUCUGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGACGGU
AGAGUAGUUCCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Erwin_amylo_0382 Erwinia amylovora tmRNA
GGGGCUGAUUCUGGAUUCGACAGGAUUUGCAAAGCCCUAGGAGCAUGCCGAGGGGCGGUUUGCCUCGUUAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUUCGCACCUGCUGCUUUAGCAGCUUAAUCAGCUUAAUAAACUGAAGGUGUCCUCU
CUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGGUCAAAACUAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUU
GAAGCGUUAAAUCCAAUCAGGCUAGUUUGUUAGUAGCGUGUCCGUUCGCAGCUAACCGGCGAAUGUAAUAACUGGACUAA
GCAUGUAGUGCCGACGGUGUAGUAAUUCUGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Erwin_chrys_0383 Erwinia chrysanthemi tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUUCGCACCUGCUGCUUUAGCAGCUUAAUCAGCCUAAGAAACUGAAGGUGUCCUCU
CUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGGUCAAACCUAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUU
GAAGCGUUAAAUCCAAUCAGGCUAGUUUGUUAGUGGCGUGUCUGUCCGCAGCUGGCAAGCGAAUGUAAAGACCAGACUAA
GCAUGUAGUACCGACGGUGUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Salmo_bongo_0384 Salmonella bongori tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAGACCCUGCCUGGGGUUGAAGCGUUAAAACGAAU
CAGGCUAGUCUGGUAGUGGCGUGUCGGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Salmo_ente1_0386 Salmonella enterica tmRNA, version 1 {Typhi, Typhimurium} AL627276:57262-57624; NC_003198:2759262-2759624; AE008822:20763-20889; AF075955:785-423X; NC_003197:2843947-2844309; AE014613:2734487-2734849; NC_004631:2734487-2734849; AF389953:1-356; AF389954:1-355X; AY319520:1371-1009; AY316313:1114-752; AB234611:1-121
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAACCUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGCGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAACGAAU
CAGGCUAGUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Salmo_ente2_0387 Salmonella enterica tmRNA, version 2 {Paratyphi} CP000026:2661750-2662112; NC_006511:2661750-2662112
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGCGGAUGCCCUGCCUGGGGUUGAGGCGUUAAAACGAAU
CAGGCUAGUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Salmo_ente3_0388 Salmonella enterica tmRNA, version 3 {Enteritidis, Dublin, Pullorum, Gallinarum} AF440354:1-314; AX048668:1-314; AX048667:1-314; AX048609:1-314; AX048608:1-314
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAACCUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAACGAAU
CAGGCUAGUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Salmo_ente4_0389 Salmonella enterica tmRNA, version 4 (ends unsequenced) {arizonae} AF389960:20-340
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCUGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGA
CGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUCAAAG
AGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAACGAAUCAGGCUAGUCUGGUAGU
GGCGUGUCCGUCCGCAGGUGCCAGGCGAAUGUAAAGACAGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGC
G
>Salmo_ente5_0390 Salmonella enterica tmRNA, version 5 {diarizonae}
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAACCUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCUUGCCUGGGGUUGAAGCGUUAAAACGAAU
CAGGCUAGUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGCGAAUGUAAAGACAGACUAAGCAUGUCCUUCCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Salmo_ente6_0677 Salmonella enterica tmRNA, version 6 {Choleraesuis} AE017220:2861122-2861484; NC_006905:2861122-2861484
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAA
AAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGCGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAACGAAU
CAGGCUAGUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAU
GUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Citbr_roden_0391 Citrobacter rodentium tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUCAGAGCCCUCUCUCCCUAGCUUCCGCU
CUUAAGACGGGGAUCAAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAACUA
AUCAGGCUAGUCUGGUAGUGGCGUGUCCGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGG
AUGUAGGAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Uncult_RCA1_0392 Uncultured cactusRCA1 tmRNA (ends unsequenced) AF389942:20-339
ACAAGAUUCACGAAACCCAAGGUGCAUGCCGAGGUGCGGUAGGCCUCGUUAACAAACCGCAAAAAAUAGUCGCAAACGAC
GAAAACUACGCACUAGCAGCUUAAUACCCUGCUUAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUAAAGAG
AGGUCAAACCCAAAAGAGAUCGCAUGGAAGUCCUGCCUGGGGCUAAAGUGCUAAAUCUAAUCAGGCUAGUUUGUUAGUGG
CGUGUCCAUCCGCAGCUGACCGGCGAAUGUAAAGAUUGGACUAAGCAUGUAGUGCCGACGGUGUAGCAAUUUCGGACGGG
>Uncult_VLS1_0393 Uncultured pondVLS1 tmRNA (ends unsequenced) AF389943:20-338; AF389944:20-338
ACAGGAUUUGCAAAGCCCUAGGAGCAUGCCGAGGGGCGGUUUGCCUCGUAAAAAGCCGCAAAAAAUAGUUGCAAACGACG
AAAACUACGCACUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCUUCCGUUCUUAAGACGGGGAUCAAGAGA
GGUCAAACCUAAAAGAACUCGCGUGAAUACCUUGCCUGGGGUUGAAGCGCUAAAAUCUAAUCAGGCUAGUUUGUCAGUGG
CGUGUCCGUUCGCAGCUGACCGGCGAAUGUAAAGAUGGACUAAGCAUGUAGUGCCGACGGUGUAGUAAUUCUGGACGCG
>Uncult_VLS3_0394 Uncultured pondVLS3 tmRNA (ends unsequenced) AF389945:21-339
ACAGGAUUUGCAAAGCCCUAGGAGCAUGCCGAGGGGCGGUUUGCCUCGUAAAAAGCCGCAAAAAAAUAGUUGCAAACGAC
GAAAACUACGCACUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCUUCCGUUCUUAAGACGGGGAUCAAGAG
AGGUCAAACCUAAAAGAACUCGCGUGAAUACCUUGCCUGGGGUUGAAGCGCUAAAAUCUAAUCAGGCUAGUUUGUCAGUG
GCGUGUCCGUUCGCAGCUGACCGGCGAAUGUAAAGAUGGACUAAGCAUGUAGUGCCGACGGUGUAGUAAUUCUGACGCG
>Uncult_VLS4_0395 Uncultured pondVLS4 tmRNA (ends unsequenced) AF389946:20-338
ACAGGAUUUGCAAAGCCCUAGGAGCAUGCCGAGGGGCGGUUUGCCUCGUAAAAAGCCGCAAAAAAAUAGUUGCAAACGAC
GAAAACUACGCACUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCUUCCGUUCUUAAGACGGGGAUCAAGAG
AGGUCAAACCUAAAAGAACUCGCGUGAAUACCUUGCCUGGGGUUGAAGCGCUAAAAUCUAAUCAGGCUAGUUUGUCAGUG
GCGUGUCCCUCCGCAGCGUGUUGCGAAUGUAAAGAGUGACUAAGCAUGUAGUACCGAGGAUGUAGUAAUUUUGGACGGG
>Uncultu_WW1_0396 Uncultured pondWW1 tmRNA (ends unsequenced) AF389947:20-338; AF389967:1-102X
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGGGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUAAAGAG
AGGUCAAACCCAAAAGAGAUCGCGCGGAUGUCCUGCCUGGGGCUGAAGUGCUAAAACUAAUCAGGCUAGUUCGUUAGUGG
CGUGUCUGCCGCAGCUGGCGUGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCG
>Uncult_RCA2_0397 Uncultured cactusRCA2 tmRNA (ends unsequenced) AF389948:20-338
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGAUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCUCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUAAAGAG
AGGUCAAACCCAAAAGAGAUCGCGCGGAUGUCCUGCCUGGGGCUGAAGUGCUAAAACUAAUCAGGCUAGUUCGUUAGUGG
CGUGUCUGUCCGCAGCUGGCGUGCGAAUGUAAAGACUGACUAAGCAUGUAGUGCCGAGGAUGUAGGAAUUUCGGACGCG
>Uncultu_WW2_0398 Uncultured pondWW2 tmRNA (ends unsequenced) AF389949:20-337
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGGGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUAAAGAG
AGGUCAAACCCAAAAGAGAUCGCGCGGAUGUCCUGCCUGGGGCUGAAGUGCUAAAACUAAUCAGGCUAGUUCGUUAGUGG
CGUGUCUGUCGCAGCUGGCGUGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCG
>Uncultu_WW3_0399 Uncultured pondWW3 tmRNA (ends unsequenced) AF389950:21-339
ACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCACCCUAGCUUCCGCUCUUAAGACGGGGAUAAAGAG
AGGUCAAACCCAAAAGAGAUCGCGCGGAUGUCCUGCCUGGGGCUGAAGUGCUAAAACUAAUCAGGCUAGUUCGUUAGUGG
CGUGUCUGUCCGCAGCUGGCGUGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCG
>Uncultu_QL1_0400 Uncultured hotspringQL1 tmRNA (ends unsequenced) AF389951:20-337
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAUAGUCGCAAACGUCG
AAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUAAAGAGA
GGUCAAACCCAAAAGAGAUCGCGCGGAUGUCCUGCCUGGGGCUGAAGUGCUAAAACUAAUCAGGCUAGUUCGUUAGUGGC
GUGUCUGUCCGCAGCUGGCGUGCGAAUGUAAAGACUGACUAAGCAUGUAGUGCCGAGGAUGUAGGAAUUUCGGACGUG
>Uncultu_WW4_0401 Uncultured pondWW4 tmRNA (ends unsequenced) AF389952:45-363
ACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GGAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUAAAGAG
AGGUCAAACCCAAAAGAGACCGCGCGGAUGUCCUGCCUGGGGCUGAAGUGCUAAAACUAAUCAGGCUAGUUCGUUAGUGG
CGUGUCUGUCCGCAGCUGGCGUGCGAAUGUAAAGACUGACUAAGCAUGUAGUGCCGAGGAUGUAGGAAUUUCGGACGCG
>Uncult_VLS6_0402 Uncultured pondVLS6 tmRNA (ends unsequenced) AF389955:20-339
ACGGGAUUUGCGAAACCCAAGAUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUCAAAGA
GAGGUCAAACCCAAAAGAGAUCGCGUGGAGGCCCUGCCUGGGGUUGAAGCGUUAAAUCUAAUCAGGCUAGUCUGGUAGUG
GCGUGUCUGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCG
>Uncultu_FS2_0403 Uncultured swampFS2 tmRNA (ends unsequenced) AF389956:21-340
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUCAAAGA
GAGGUCAAACCCAAAAGAGAUCGCGUGGAGGCCCUGCCUGGGGUUGAAGCGUUAAAUCUAAUCAGGCUAGUCUGGUAGUG
GCGUGUCUGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCG
>Uncultu_WW5_0404 Uncultured pondWW5 tmRNA (ends unsequenced) AF389957:20-339
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUCAAAGA
GAGGUCAAACCCAAAAGAGAUCGCGUGGAGGCCCUGCCUGGGGUUGAAGCGUUAAAACUAAUCAGGCUAGUCUGGUAGUG
GCGUGUCUGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUGCCGAGGAUGUAGGAAUUUCGGACGCG
>Uncultu_WW6_0405 Uncultured pondWW6 tmRNA (ends unsequenced) AF389958:20-339
ACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUCUGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUCAAAGA
GAGGUCAAACCCAAAAGAGAUCGCGUGGAGGCCCUGCCUGGGGUUGAAGCGUUAAAACUAAUCAGGCUAGUCUGGUAGUG
GCGUGUCUGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGCGCCGAGGAUGUAGGAAUUUCGGACGCG
>Uncult_VLW1_0406 Uncultured creekVLW1 tmRNA (ends unsequenced) AF389959:20-339
ACGGGAAUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGGGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUCAAAGA
GAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAACUAAUCAGGCUAGUCUGGUAGUG
GCGUGUCCGUCCGCAGGUGCCAGGCGAAUGUAAAGACAGACUUAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCG
>Uncult_VLS7_0407 Uncultured pondVLS7 tmRNA (ends unsequenced) AF389961:20-339
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUCAAAGA
GAGGUCAAACCCAAAAGAGAUCGCGUGGAUGCCCUGCCUGGGGUUGAAGCGUUAAAACGAAUCAGGCUAGUCUGGUAGUG
GCGUGUCCGCCCGCAGGUGCCAGGCGAAUGUAAAGACAGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCG
>Uncult_VLS8_0408 Uncultured pondVLS8 tmRNA (ends unsequenced) AF389962:20-338
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCGCGUAAAAAGCCGCAAUAAAUAGUCGCAAACGACG
AAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGA
GGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAUCAGGCUAGUUUGUUAGUGG
CGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACGCG
>Uncult_VLS9_0409 Uncultured pondVLS9 tmRNA (ends unsequenced) AF389963:20-338
ACGGGAUUUGCGAAGCCCUAGGAGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUACGCUUUAGCAGCUUAAUACCCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAG
AGGUCAAACCCAAAAGAGAUCGCGUGGAUGUCCUGCCUGGGGCUGAAGCGUUAAACUCAAUCAGGCUAGUCUGUCAGUAG
CGUGUCCAUCCGCAGCUGGCCGGCGAAUGUAAAGAUUGACUAAGCAUGUAGUGCCGACGGUGUAGUAAUUUCGGACGGG
>Uncult_VLW2_0410 Uncultured creekVLW2 tmRNA (ends unsequenced) AF389966:19-337
ACGGGAUUGUGAAGCCUUAGGAGCAUGCCGAGGGGCGGUUUGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGACG
AAAACUACGCACUAGCAGCUUAAUAACCUGCUUAGAGCCUUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGA
AGUCAAACCCAAAAGAGCUCGUGUGGAUGUCUUGCCUGGGGCUGAAGCACUAAAACUAAUCAGGAUAGUUUGGUAAUGGC
GUGUCUAUCCGCAGUUGCCCGGCGAAUGUAAAGAUAUGACUAAGCAUGUAGUGCCGACGGUGUAGUAAUUUCGGACGCG
>Uncultu_WW7_0411 Uncultured pondWW7 tmRNA (ends unsequenced) AF389964:20-338
ACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAUAGUCGCAAACGAC
GAAAACUGCGCUUUAGCAGCUUAAUAACCUGCUAAGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAAUAAAGA
GAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUAAUCAGGCUAGUUUGUCAGUG
GCGUUCCUCCGCAGCUGGCCAGCGAAUGUAAAGACUGGACUAAGCAUGUAGUGCCGAGGAUGUAGGAAUUUCGGACGCG
>Uncultu_WW8_0412 Uncultured pondWW8 tmRNA (ends unsequenced) AF389965:20-340
ACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAAAUAUAGUCGCAAACG
ACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUCUGAGCCCUCUCUCCCUAGCUUCCGCUCUUAAGACGGGGAUCAAA
GAGAGGUCAAACCCAAAAGAGAUCGCGUGGAGGCCCUGCCUGGGGUUGAAGCGUUAAAUCUAAUCAGGCUAGUCUGGUAG
UGGCGUGUCUGUCCGCAGGUGCCAGGCGAAUGUAAAGACUGACUAAGCAUGUAGUACCGAGGAUGUAGGAAUUUCGGACG
C
>Yersi_pesti_0413 Yersinia pestis tmRNA AJ414146:126951-126588; NC_003143:1245951-1245588; AE013908:10909-11272; NC_004088:3388875-3389238; AE017130:266324-266687; NC_005810:1136978-1137341; AAKS01000002:63566-63929; NZ_AAKS01000002:63566-63929
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGUGCGGUGGCCUCGUAAAAAACCGCAAA
AAAAAUAGUUGCAAACGACGAAAACUACGCACUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCUAAAAGAGCUCGUGUGGAAACCUUGCCUGGGGUGGAAGCAUUAAAACUAAU
CAGGAUAGUUUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGCGAAUGUAAUGAUUGGACUAAGCAUGUAGUGCCGACGG
UGUAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Yersi_frede_0720 Yersinia frederiksenii tmRNA AALE01000007:213547-213909; NZ_AALE01000007:213547-213909
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGUGCGGUGGCCUCGUAAAAAACCGCAAA
AAAAUAGUCGCAAACGACGAAAACUACGCACUAGCAGCUUAAUACCCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUCU
UAGGACGGGGAUCAAGAGAGGUCAAAACUAAAAGAGCUCGUGUGGAAACCUUGCCUGGGGUGGAAGCAUUAAAACUAAUC
AGGAUAGUUUGUCAGUGGCGUGUCCAUCCGCAGCUGGCCGGCGAAUGUAAUGAUUGGACUAAGCAUGUAGUACCGACGGU
GUAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Yersi_pseud_0414 Yersinia pseudotuberculosis tmRNA BX936398:1359891-1359528; NC_006155:1359891-1359528; AAKT01000001:4333625-4333262; NZ_AAKT01000001:4333625-4333262
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGUGCGGUGGCCUCGUAAAAAACCGCAAA
AAAAAUAGUUGCAAACGACGAAAACUACGCACUAGCAGCUUAAUAACCUGCUUAGAGCCCUCUCUCCCUAGCCUCCGCUC
UUAGGACGGGGAUCAAGAGAGGUCAAACCUAAAAGAGCUCGUGUGGAAACCUUGCCUGGGGUGGAAGCAUUAAAACUAAU
CAGGAUAGUUUGUCAGUAGCGUGUCCAUCCGCAGCUGGCCGGCGAAUGUAAUGAUUGGACUAAGCAUGUAGUGCCGACGG
UGUAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Yersi_enter_0415 Yersinia enterocolitica tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGUGCGGAGGCCUCGUAAAAAACCGCAAA
AAAAAUAAUUGCAAACGACUCGCAAUACGAAUCUGCUGCUUUAGCAGCUUAAUCAGCCUAAGAAACUGAAGAUUCCCUCU
CUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGGUCAAACCUAAAAGAGAUCGCGUGGACACCUUGCCUGGGGUG
AAAGCGUUAAACCCAAUCAGGAUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUAACCGGCGAAUGUAAUGACUGGACUAA
GCAUGUAGUGCCGACGGCGUAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Yersi_inmed_0721 Yersinia intermedia tmRNA AALF01000015:36188-36568; NZ_AALF01000015:36188-36568
GGGGCUGAUUCUGGAUUCGACGGGAUUCGCGAAACCCAAGGUGCAUGCCGAGGUGCGGAGGCCUCGUAAAAAACCGCAAA
AAAAAUAAUUGCAAACGACUCGCAAUACGAAUCUGCUGCUUUAGCAGCUUAAUCAGCCUAAGAAACUGAAGAUUCCCUCU
CUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGGUCAAACCUAAAAGAGAUCGCGUGGACACCUUGCCUGUGGUG
AAAGCGUUAAACCCAAUCAGGAUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUAACCGGCGAAUGUAAUGACUGGACUAA
GCAUGUAGUGCCGACGGCGUAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Yersi_molla_0722 Yersinia mollaretii tmRNA AALD01000003:4044-3664; NZ_AALD01000003:4044-3664
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGUGCGGAGGCCUCGUAAAAAACCGCAAA
AAAAAUAAUUGCAAACGACUCGCAAUACGAAUCUGCUGCUUUAGCAGCUUAAUCAGCCUAAGAAACUGAAGAUUCCCUCU
CUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGGUCAAACCUAAAAGAGAUCGCGUGGACACCUUGCCUGGGGUG
AAAGCGUUAAACCCAAUCAGGAUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUAACCGGCGAAUGUAAUGACUGGACUAA
GCAUGUAGUGCCGACGGCGUAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Yersi_berco_0723 Yersinia bercovieri tmRNA AALC01000015:62411-62791; NZ_AALC01000015:62411-62791
GGGGCUGAUUCUGGAUUCGACGGGAUUUGCGAAACCCAAGGUGCAUGCCGAGGUGCGGAGGCCUCGUAAAAAACCGCAAA
AAAAAUAAUUGCAAACGACUCGCAAUACGAAUCUGCUGCUUUAGCAGCUUAAUCAGCCUAAGAAACUGAAGAUUCCCUCU
CUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGGUCAAACCUAAAAGAGAUCGCGUGGACACCUUGCCUGGGGUG
AAAGCGUUAAACCCAAUCAGGAUAGUUUGUUAGUGGCGUGUCCGUCCGCAGCUAACCGGCGAAUGUAAUGACUGGACUAA
GCAUGUAGUGCCGACGGCGUAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Uncul_weevi_0639 Uncultured weevil-associated tmRNA (3-prime end unsequenced) CN612381:8-221
GGGGCUGAUCCUGGAUUCGACGGGAUUUGUGAAACUCAAGGUGCAUGCCGAGGUGAGGUUGGCCUCGUAAAAAAGCCUCA
AAAAAAAAUAAUUGCAAACGACUCGCAAUACGAAUCUGCUGUGUUAGCAGCUUAAUCAGCCUAAUAAACUGAAGAUUCCC
UCUCUCCCUAGCCUCCUCUCUUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAA
>Mannh_haemo_0416 Mannheimia haemolytica tmRNA
GGGGCUGAUUUUGGAUUCGACGGGAUUGGCGAAGCCCAAGGUGCAUGUCGAGGUGCGGUAGGCCUCGUAAACAAACCGCA
AAAUAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCUUUAAAGCCUUAUCUCCUCAGCUUCCGC
UCGUAAGACGAGGGCAAAGAUAAGUCACCCAAAACGAGAUCGUGUGGACGCCGCCGCUUUAGGAUCGAAACACUAAAUUA
AAUAAAGCUAGUUUAUUCAUUGCGUGUCUGUCCGCUGUGAAUAAGCGAAAUUAAAGACUAGACUAAACAUGUAGUACUGA
AGGUAGAGAAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Mannh_succi_0417 Mannheimia succiniciproducens tmRNA AE016827:1128104-1128470; NC_006300:1128104-1128470
GGGGCUGAUUCUGGAUUCGACGGGAUUGGCGAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCUCCCUAGCUUCCGCU
CGUAAGACGGGGAUCAAGCGGAGUCAAACCUAAACGAGAUCGUGUGGACGCUUCGGCUUGGAGAUCGAAACACUAAAUUG
AAUCAAGCUAGUUUAUUCUUCGCGUGUCUGUCCGCAGGGGGUAAAUGAAAUUAAAGACUAGACUAAACGUGUAGUGCUGA
AGGUAGAGUAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Haemp_ducre_0418 Haemophilus ducreyi tmRNA, version 1 {35000HP} AE017143:71003-70637; NC_002940:71003-70637
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGUCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAACAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCGCCCUAGCUUUCGCU
CGUAAGACGGGGAGCACGCGGAGUCAAACCAAAACGAGAUCGUGUGGACGCUUCGGCUUGUAGAUCGAAACACCAAAUUG
AAUCAAGCUAGUUUAUUUCUUGCGUGUCUGUCCGCUGGAGAUAAGCGAAAUUAAAGACCAGACUAAACGUGUAGUACUGA
AGAUAGAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Haemp_ducr2_0668 Haemophilus ducreyi tmRNA, version 2 (ends unsequenced) {NCTC 10945} AX048594:1-331; AX048595:1-331
ACGGGAUUAGCGAAGUCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAACAAACCGCAAAAAAAUAGUCGCAAACGAC
GAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCGCCCUAGCUUUCGCUCGUAAGACGGGGAGCACGCG
GAGUCAAACCAAAACGAGAUCGUGUGGACGCUUCCGCUUGUAGAUGAAACACUAAAUUGAAUCAAGCUAGUUUAUUUCUU
GCGUGUCUGUCCGCUGGAGAUAAGCGAAAUUAAAGACCAGACUAAACGUGUAGUACUGAAGAUAGAGUAAUUUCGGACCC
GGGUUCGACUC
>Haemp_infl1_0419 Haemophilus influenzae tmRNA, version 1 {Rd, 10810} L42023:1357929-1357564; AR632719:1357323-1356958; BD426631:1357323-1356958; AR274513:1357323-1356958; NC_000907:1357929-1357564; AY599475:1932-1567
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCGCUCCAGCUUCCGCU
CGUAAGACGGGGAUAACGCGGAGUCAAACCAAAACGAGAUCGUGUGGAAGCCACCGUUUGAGGAUCGAAGCACUAAAUUG
AAUCAAACUAGCUUAAGUUUAGCGUGUCUGUCCGCAUGCUUAAGUGAAAUUAAAGACGAGACUAAACGUGUAGUACUGAA
GGUAGAGUAAUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCA
>Haemp_infl2_0420 Haemophilus influenzae tmRNA, version 2 {R2866} AADP01000001:1018447-1018812; NZ_AADP01000001:1018447-1018812
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCGCUCCAGCUUCCGCU
CGUAAGACGGGGAUAACGCGGAGUCAAACCAAAACGAGAUCGUGUGGAAGCCACCGUUUGAGGAUCGAAGCACUAAAUUA
AAUCAAACUAGCUUAAGUUUAGCGUGUCUGUCCGCAUGCUUAAGUGAAAUUAAAGACGAGACUAAACGUGUAGUACUGAA
GGUAGAGUAAUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCA
>Haemp_infl3_0421 Haemophilus influenzae tmRNA, version 3 {R2846} AADO01000004:108669-109034; NZ_AADO01000004:108669-109034
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCAAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCGCUCCAGCUUCCGCU
CGUAAGACGGGGAUAACGCGGAGUCAAACCAAAACGAGAUCGUGUGGAAGCCACCGUUUGAGGAUCGAAGCACUAAAUUG
AAUCAAACUAGCUUAAGUUUAGCGUGUCUGUCCGCAUGCUUAAGUGAAAUUAAAGACGAGACUAAACGUGUAGUACUGAA
GGUAGAGUAAUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCA
>Haemp_infl4_0422 Haemophilus influenzae tmRNA, version 4 {86-028NP} CP000057:1701595-1701960; CQ872938:578-213; NC_007146:1701595-1701960; CQ873160:271847-272212
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCGCUCCAGCUUCCGCU
CGUAAGACGGGGAUAACGCGGAGUCAAACCAAAACGAGAUCGUGUGGAAGCCACCGUUUGAGGAUCGAAGCACUAAAUUG
AAUCAAACUAGCUUAAGUUUAGCGUGUCUGUCCGCAUGCUUAAGUGAAAUUAAAGACGAGACUAAACGUGUAGUGCUGAA
GGUAGAGUAAUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCA
>Haemp_somnu_0423 Haemophilus somnus tmRNA AABO02000006:59036-59402; NZ_AABO02000006:59036-59402; AACJ01000014:8785-9151; NZ_AACJ01000014:8785-9151
GGGGCUGAUUUUGGAUUCGACGGAAUUAGCGAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAACAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCUCAUAGCCUUCACUCCCUAGCUUUCGCU
CGUAAGACGGGGAUAAAGUGGAGUCAAAUCCAAACGAGAUCGUGUUGAAGCCGCCGCUUUAGGAUCGAAGCAUUAAAUUG
AAUAAAGCUAGUUUUUUGAUGGCGUGUCUGUCCGCAGUCAAUUUACGAAAUUAAAGAUUAGACUAAACGUGUAGGACUGA
AGGUAGAGUAAUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCA
>Pasta_multo_0424 Pasteurella multocida tmRNA AE006115:421-55; NC_002663:906024-905658
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCUCAUAGCCUUCUCUCCCCAGCUUCCGCU
CGUAAGACGGGGAUCAAGAGGAGUCAAAUUCAAACGAGAUCGCGUGGACGCCUCCGCUUGAGGAUCGAAGCGUUAAAUUG
AAUCAAGCUAGUUUAUCUAUCGCGUGUCUGUCCGCAGUGGGUAAAUGAAAUUAAAGACGAGACUAAACGUGUAGUACUGA
AGGUAGAGUAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Actbl_actin_0425 Actinobacillus actinomycetemcomitans tmRNA
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGCCCGAAGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCCUUUAGCCUUCGCUCCCCAGCUUCCGCU
CGUAAGACGGGGAUAAAGCGGAGUCAAACCAAAACGAGCUCGUGUGGAAGCCACCGUUUGAGGAUCGAAGCAUUAAAUUA
AAUCAAACUAGCUUAAUUGUCGCGUGUCCGUCCGCAGGAUUAAGUGAAUUUAAAGACCGGACUAAACGUGUAGUGCUAAC
GGCAGAGGAAUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCA
>Actbl_succi_0724 Actinobacillus actinomycetemcomitans tmRNA AAKC01000004:34785-35151; NZ_AAKC01000004:34785-35151
GGGGCUGAUUCUGGAUUCGACGGGAUUGGCGAAGCCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCAUUUAGCCUUCGCUCCCCAGCUUCCGCU
CGUAAGACGGGGAUCAAGCGGAGUCAAACCUAAACGAGAUCGUGUGGACGCUUCGGCUUGGAGAUCGAAACACUAAAUUG
AAUCAAGCUAGUUUAUUCUUCGCGUGUCUGUCCGCAGGGGAUAAAUGAAGUUAAAGACCAGACUAAACGUGUAGUGCUGA
AGGUAGAGUAAUUUCGGACGCGGGUUCAACUCCCGCCAGCUCCACCA
>Actbl_pleu1_0426 Actinobacillus pleuropneumoniae tmRNA, version 1 {sv.1, sv.7} AACK01000032:16802-17167; NZ_AACK01000032:16802-17167; CQ829409:242-616X
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGUCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAACAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCUCAUAGCCUUAUCGCCUCAGCUUCCGCU
CGUAAGACGAGGGCAACGAUAAGUCACCCAAAACGAGAUCGUGUGGACGCCGCCGUUUGAGGAUCGAAACACUAAAUUGA
AUCAAACUAGCUUAUUUCUUGCGUGUCUGUCCGCUGGAGGUAAGUGAAAUUAAAGACCAGACUAAACGUGUAGUGCUGAA
GAUGGAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Actbl_pleu2_0427 Actinobacillus pleuropneumoniae tmRNA, version 2 {sv.5}
GGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGUCCAAGGUGCACGUCGAGGUGCGGUAGGCCUCGUAAACAAACCGCA
AAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCUCAUAGCCUUAUCGCCUCAGCUUCCGCU
CGUAAGACGAGGGCAACGAUAAGUCACCCAAAACGAGAUCGUGGGGACGCCGCCGUUUGAGGAUCGAAACACUAAAUUGA
AUCAAACUAGCUUAUUUCUUGCGUGUCUGUCCGCUGGAGGUAAGUGAAAUUAAAGACCAGACUAAACGUGUAGUGCUGAA
GAUGGAGUAAUUUCGGACGGGGGUUCAAAUCCCCCCAGCUCCACCA
>Magcocc_MC1_0428 Magnetococcus sp. tmRNA AAAN03000001:217426-217791; NZ_AAAN03000001:217426-217791
GGGGGUGAACUGGCUUCGACGGGGUGUGGAACGGUUAGCAAGGCGACUCGGAAUGGUACCUACGUACAGGACCAAACUUU
ACAAUUGCCAAUGACGAGCACUACGCUCCGGCUUUUGCAGCUGCAUAAAGUAGUUGUACAAAGCGGGGUCUGAACCCGGG
CCCGGCAACAGAAGCUUUUAGCGGGGUUAAGCCGGAACUGUGUAGGCCGGUGUAAAUCCAGGGACACCCAGUUCUCCGAG
GUAACGGGGGCUAUGUGGUCAGCCAGCCUGAGACGCCACAAAGCAGUAGGGUUGGCAAAAUGGUCGUGAUUCCUUCUAGC
UUAAUACAUAUUUCGGACCGGGGUUCGACUCCCCGCACCUCCACCA
>Uncult_HF10_0731 Uncultured marine_HF10 tmRNA DU743688:115-455
GGGGGUGAACUGGCUUCGACUUUGAAGCGAGCCUCUCAGUAGCGAGCUGAGGGUCCUAGGGCCUCAUUAAAAACGUAGGA
AAAAAAAGAUAACUGCCAAACCUAAAUUGGCCGUAGCAGCUUAAUUGUUGCUCGUCGACUAUCGGGGUUCCCACCUCGGA
UAGUAUCGGCGUCGAAAUGUGGGAUGCUAAGUUAGUUUACCGGCUAGCUUUCAAGAUUUAAGGUAAAAACUAUUGAGAAU
UUGUUUCUGGUGACUCUCUCAAUAGUAUUUCACCAGAUGCGCUCGGAGAAGCUGUUAGGUAGCUUAAAAGGACCGGGGUU
CGACUCCCCGCACCUCCACCA
>Prbr_SAR1_1_0629 Proteobacteria SAR-1 tmRNA, version 1 AACY01013710:5723-5369
GGGGGCGACUUGGCUUCGACAGCAGAUACAAACCCUCAAGUGCAUGUCGAGAAGGUAGUAAUUCUCGUAAAUAAAUUGCU
GCAAACUUGUUAGUUGGCGAAAACGCAGACUACGCUUUAGCCGCUUAAUUGGCUAACUGUCCUUGGUAACGUGCUCGUGC
GCCUCCAAAGACAGACGACUACACGAGAUGCUGGAAUUGUUCUUCUCAUUGACAAUUUCUUAAGAAUUAAAUUGAGAUCG
UUUUUUGAUCCCUGUUUAUCGGGUGUAAAAGAUUAAAUUAAUAGAUAAAACUAAACAUGUAGAUCUUGUGGCAGAGUACU
GAUGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Prbr_SAR1_2_0630 Proteobacteria SAR-1 tmRNA, version 1 AACY01117420:7657-7313; AACY01491144:432-776
GGGGGCGUAUUAGGCUUUGACGUCUACCACGGAACCUAAAGUGCAUAUCGAGCAUGAACAUAACUCGUUAAAUACUGUUU
AAAACAAAUAGUUGCAAAUAAUUACAACUAUAGUUUGGCAGCUUAAUGCCAACCUGUUAUCAUUUGUGGCCUACAACAUU
UGAUAACGGUCAUUUUAGUAGGAUAUACUCUACCAGCGCCCACUUGUAGAGUGAAUUUAAGGGCUUAGCUUAAUGUGUCU
UGAUCAUCAGGCUACAUUAAAGUGAAUUAAAUUGAUGAAUCUAAGUAUGUAGAUACUAAGGGAAAGUGAUGACGGACGUG
GGUUCAAAUCCCGCCGCCUCCACCA
>Prbr_SAR1_3_0631 Proteobacteria SAR-1 pre-tmRNA, version 1 AACY01081395:5902-5553
GGGGGCGAUCGGUUUCGACGAAAUAUGCAUCUUUCUAAAUGGCAUGCCGAGUCCCAGAAUCUCGUAAAUAAUCUGGAAAA
ACCAUAAAUGCCGAUAACGGCUACAUGGCCGCUGCUUAAGUAAGUGGUCCGUCCUUAGUUUAGUGCGUCUAUGGCUUAGC
UAAAGGGCGUCAAAUACAUAGACUGGUUCUGGUUGUGUCUGUGAUAUCAGGAUGAGAAUUAAACAGACUGUGUUUAUAAU
AGUUUUGUCAUCAGGACAGUUAUAAGCAAGAUUAAUCUGAUUGACUAAGCGUGUAGAUAUUUUUUUAGGUUCUAUCUCGG
ACGGGAGUUCGAUUCUCCCCGCCUCCACaa
>Uncul_phako_0725 Uncultured phakopsora1 tmRNA AC165062:759-1127
GGGGGCGACCUGGCUUCGACGGGGAGAGAGAAUUCGAGAGCGCGUGCCGAGGUCCCCGACAACCUCGCUAAUCCUCGGGA
AAAAAAUCAAACGCCAACGAUAACUCGUAUGCGUUGGCCGCCUAAAGAGAUUUAGGUAGCCCGUUGGCGUCCGUGGGGCC
UACAACGCGGACGCCGACGCCAUCUACAGCAGGCUAGCCGAUCACUCUUGUUCAGGGGCGGCCGGCGAAACUCUCUGAAC
UGGUCCAAUCCGGAUCCUGUCAGUCGGAGCUGGUGAGGAUGAGAAAGCCGUAGCAUAGACUGACUACGCACGUAGUGGUC
UCGUAGGACCUAUUCUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Lawso_intra_0429 Lawsonia intracellularis tmRNA
GGGGACGCACUGGUUUCGACGGGGAUGUGGAAACCAAAGUGGCAGGUCGAGGCGCCGCUGGCCUCGUAAAAAGCGGCAAC
AAUGUAAUUGCAAACAACAAUUACGACUACGCUCUUGCUGCAUAAGUAAUAGCGUACCUGGCUAUUUAAAUAGCCACGUC
AAUCCUGCUGAUGUCUGAUAAGCUGGUGCGGCGACAAUCAUCAGGCUAGCAGCCUAUUGUGUUUACUGGAUAGUCUGCGA
AAUUAUUACAGUAAACUUGUUUUGAUCUGCCUGGCUAAGGGCUAGAAUCAAAAUAAGAUGUAAACUUAGCCUAAACCUGU
AGAUACUUUGUGUGGAACUUUCUCGGACGCGGGUUCGAUUCCCGCCGUCUCCACCA
>Desvb_desu1_0430 Desulfovibrio desulfuricans tmRNA, version 1 (ends unsequenced) {ATCC 27774} U68081:22-355
GGGGACGUGGAAGCCGUAGCGGCAGGUCGAGGCGCCGCUGGCCUCGUAAAAAGCGGCACAAAAGUAAUUGCCAACAACGA
UUACGACUACGCUUACGCUGCCUAAUAACAGCGAGGCAAUGACCGUUUAACGGUCGCGCCGAUCAGGGCCAUGCCUGAUA
ACCCUGAUUGGCGACACUUAUCAGGCUGGCGAAAACCGGCUCUCGCCGGGGUUUUUCGCGAGGAGUUUACCGGCGGGAUU
GCUGCGUUGUGCCUGGUCAGGGGCCAACAGCGCGGUGAAAUACAUACUUGACCUAAACCUGUAGAUGCUUCGUGUGGAAU
GUUCUCGGACGGGG
>Desvb_desu2_0431 Desulfovibrio desulfuricans tmRNA, version 2 {G20} CP000112:1988490-1988131; NC_007519:1988490-1988131
GGGGGCGCACUGGUUUCGACGGGGAUAAAGAAGCCGGAGUGGCAGGUCGAGGCGCCGCUGGCCUCGUUAAAAGCGGCACA
AAUGUAAUUGCCAACAACGAUUACGAAUACGCAAUGGCAGCCUAAUUAGGCUUGCCGCACUGAUUGGCUGACGUCAGAUA
CGCCGACCAGUGACAAACUUAUCCGACUGGCACCCAAAGCCGUCUGUCGCAGCGGGUGUAAGAUUUUUUAAGACAGACUU
GCCGCCGGUAGCCCGAUCAGGGGCAUCACCGGAUGGCGAGCUUGAAUACCUGAUCUAAACCUGUAGAAGCUUCGAGUGGA
CUGUUCUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Desvb_vulga_0432 Desulfovibrio vulgaris tmRNA AE017285:1922270-1922621; NC_002937:1922270-1922621
GGGGGCGCACUGGUUUCGACGGGGACGUAGAAGCCGGAGUUGCAGGCCGAGGCGCCGCUGGCCUCGUAAAAAGCGGCACA
AAAGUAAUUGCCAACAAUUACGACUACGCUCUGGCUGCUUAAUUGACGGCCACGUCGAACCGGUUCACGCCUGAUAGACC
GGUGAGACGUAACUUCAUCAGGCUGGCAUCUGACGGCGCUCGCCGCGAAGGGUGCGAGAAAAACAGGUGAGCUGGUCGAA
GGUUGCCUGGUCGGGGGCGAAACCUGAGAUGACGAUUGUACUCGACCUAAGCCUGUAGACGCUUCGUGUGGAACAUUCUC
GGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Destl_pschr_0433 Desulfotalea psychrophila tmRNA CR522870:569610-569245; NC_006138:569610-569245
GGGGGCGAAACGGCUUCGACGGGGAUGUAUAAGCUCUACGUUGCAUGUCGAGCAACUGCCAGCUCGUAAAAAAGGCGGAA
ACUAAUAUAAUCGCAGACGAUUAUAACUACGCAGUAGCAGCUUAAUAACUGUCAUACUGCCGUCUCUCCAGUCCUCCGCU
CAUGAGGGUUGGGUCCGAGGCGUCGACCAAAAUGAGCUAGCAAUCGGGUGGUGUUCUGGUCGCCCCGGCGCGAAAAUAUA
CAGAAUAGCGUUAUAGUAUCCCUGUUCCGACGGAAGCUAAAUCGCGAAAACUAAGUGGGAACUAAACAUGUAGAUACGAG
AGGGGAGCAUUUGCGGACGCGGGUUCGACUCCCGCCGCCUCCACCA
>Uncul_cion1_0434 Uncultured ciona tmRNA AACT01039607:1457-1864
GGGGGUGAUUCGGAUUCGACGACGGUAUCGAACCCUUAGGUGCAUGCCGAGGGCGUAGUGGUUCUCGUUAAUCAAAACAC
UACAAACCUAUUAGUUGCCACAUUGACAACUACUGGAAGUGCAAACGACGAGUUCUUUGACGCUCGUCUUCGUGCUUAAU
CGUAGCUAAACCCUACGAGCUUCCCAGUCCGUCCGGCUCGUCUGCUGGCUGGUUUUUCGGACUGUCAUCGUAAGCGGACU
CGCCACGUUCAGCAGGUCUCUGGCUGACGGGUUAAAACUUGUGGGAAUCGCGCUGCAGAACCCCGACCACUGGGUCGCUG
UGGUGUUAAAUUUAAACGUGGAUCUAAGCAUGUAAAGCCGAAGGCUGAGAGCUGGCGGACGCGGGUUCGACUCCCGCCGC
CUCCACCA
>Syntr_acidi_0732 Syntrophus aciditrophicus tmRNA CP000252:1802340-1801985; NC_007759:1802340-1801985
GGGGGCGUUACGGUUUCGACGGGGAUAGUUGAAGCUGUAGAAGCGUACCGAGGUUCCUACAGGCCUCGUUAAACAGGUAG
GAAAACAAUACUCGCAAACGACUACGAGUACGCAUUAGCCGCUUAGUCGGCUAACGUUCUUUCUGAUUUUUCCUGUCGGA
UCAGAGGGGGCGUAAUUUCAGGCAGGAUAGUCCUAACCUUUUCCUGUGGGGAACAGGGCGAAAUUCACAUGGGAUAGCAA
UCAGUAAAGCCUGCCUUUGGGCGUUACAGAGUGCGAAUGACAAAACAAAGGAUACGUACGUAGAAACUGCAGUGGAAUAU
UUUCGGACGCGGGUUCGACUCCCGCCGCCUCCACCA
>Geobr_sulfu_0436 Geobacter sulfurreducens tmRNA AE017180:1874135-1874490; NC_002939:1874135-1874490
GGGGGUGUACAGGUUUCGACGGGGAUAGGAAGCUGAUGGUUGCAUGCCGAGGUCCGGGCUGGCCUCGUUAAAAAGCCCGG
GGCGAAUUACACGCCGAUAAUUACGACUACGCUGUAGCAGCUUAAUAACCUGCUACCGAUCCGCUGAGCCUCUCCCACGG
GUGAAGAUGGAUCGUCAUUUUAGUGGGAUAGUUGCGGGGAGGGUCCACGGCCCCAAGGCGAAACCUUAGUGGAAUCGCUU
CCCGGAAAUCCCUGCCAGGGGAGAGUCGGGCGGCUAAAUCAAAUCCUGGUAUAAGCAUGUAGACGCCUUCGGUGUAUGAU
CUUCGGACGCGGGUUCGACUCCCGCCACCUCCACCA
>Geobr_metal_0437 Geobacter metallireducens tmRNA CP000148:1848574-1848929; NC_007517:1848574-1848929
GGGGGUGUACAGGUUUCGACGGGGAUAGGAAACUAAAGGUUGCAUGCCGAGGUCCGGGCUGGCCUCGUUAAAAAGCCCGG
GGCGAAUUACACGCCGAUAAUUACGACUACGCCGUAGCAGCUUAAUACCCUGCUACCGAUCCGCCGAGCCUCUCCCACGG
GUGAAGAUGGAUCGUUAUUUCAGUGGGAUAGUCAAGGGGAGUGCCCGCGGCCCCAAGGCGAAACUUUAGCAGGAUCGCUU
CCCGGAAAUCCCUGCCAGGGGAGAGUCGGGCGGCUAAAUCAAAUCCUGGCAUAAGCAUGUAGACGCCUUCUGUGUAUGAU
CUUCGGACGCGGGUUCGACUCCCGCCACCUCCACCA
>Desfm_aceto_0438 Desulfuromonas acetoxidans tmRNA AAEW01000011:9-360; NZ_AAEW01000011:9-360
GGGGGCGCCAAGGUUUCGACGGGGAUUGGAAGCUAAGGUUGCAUGUCGGAGUGGGCAGGCUCCGUUAAAAAGCCCAUCUU
AUACAAACGCCGAUACUGACGUUUCGUACGCACUGGCAGCUUAAGUCUGCCACGUCUCUAGUCUCUUCGCCUGCGGGUUU
CUAGCGACGUCAAUUUAGUAGGCUGGUUGUUGUUCAAGUCCGUGGUUCAACAGCGAGAUCUAAACGGAAUCGCCACAUGU
AAGAGCCUGUCUGUGGGGGCUGCAUGCGGUUAAAUUUAAAACACAGACUACACAUGUAGACGCCUUAAGUGAAAGAUUUU
CGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Bvora_marin_0439 Bacteriovorax marinus tmRNA
GGGGGUGCCCUGGUUUCGACGGGUUGCUAGAAGUUUUGUGGGCGUGUCCAGGCUGGUGUCCAAGGUCCUGGUUAAAAGGA
GACCAAACCAUAAUUGCAGAAUCUAAUUUUGCUCCAGCUAUGGCCGCUUAAUUUAAUUAACGCCGCCGCUUUAAGUAGCU
UGAGGGGUUAGCAUCCAAUAAACAGAAGCUAACAUCCCAGUGGUAACAACUGGCUAACUUGUUACGCAGCAACUGCCAUG
CAAUGCUGUUGAAAAAACAAGUGGGGUUUGUCGAGUUCGCGUAAUUCGAACAGUCUUGUCUUCUGACGAUAAAUGAAGAC
UACGCACGUAGUCCGCACUAUGGAAAUCAACUCGGACGCGGGUUCGAUUCCCGCCACCUCCACCA
>Bdell_bacte_0440 Bdellovibrio bacteriovorus tmRNA BX842656:106010-105665; NC_005363:3581623-3581278
GGGGGCGUACUGGCUUCGACGUGGGUGCUGAAGCAUAAGGAGCAUACCGGGGCGGAUGAGGACCUCGUUAAAAACGUCCA
CUUUGUAAUUGGCAACGAUUACGCACUUGCAGCUUAAUUAAGCAGCACGAUCAACCUUGUGGUGGUUCCGCACUUGGAUU
GAUCGUCAUUUAGGGACCUCGGCGUGUUGGGUUUUCUCCAGCAGACAUGCUUAAAUUUACUGGGGGAGAGGUCUUAGGGA
UUUUGUCUGUGGAAGCCCGAGGACCAAUCUAAAACACUGACUAAGUAUGUAGCGCCUUAUCGUGGAUCAUUUGCGGACGG
GGGUUCAAUUCCCCCCGCCUCCACCA
>Myxoc_xanth_0435 Myxococcus xanthus pre-tmRNA AR619489:1092-1457
GGGGGCGACCUGGUUUCGACGGGGGCAUUGAAGUUCGAGACGCGUGCCGAGCUUGUCAGGUAGCUCGUAAAUUCAACCCG
GCAAAGACACAAAAGCCAACGACAACGUUGAGCUCGCGCUGGCUGCCUAAAAACAGCCCAUAGUGCGCGGUCCCCCCGCC
CUCGGCCUGUGGGGUUGGGACAGACCGUCAUAAUGCAGGCUGGCUGCCGAGGGUGCCUGGACCCGAGGUGGCGAGAUCUU
CCCAGGACCGGCUCUGAGUAUCCCGUCCGUGGGAGCCUCAGGGACGUAGCAAAUCGCGGACUACGCACGUAGGGUCGAAG
AGCGGACGGCUUUCGGACGCGGGUUCGAUUCCCGCCGCCUCCACug
>Wolin_succi_0446 Wolinella succinogenes tmRNA BX571661:326505-326873; NC_005090:1720954-1721322
GGGGUCGACUUGGAUUUCGACGGGAGCUAAAUAGCCUCGGUUGCAUGUCGGCAUGGGCACGCCGUAAAACUACCCGCAAU
CAAUAAACGCAAACAACGCAAACUACGCUCCCGCUUACGCCAAAGCUGCGUAAGUCUAACUCUUCGGAGCCGUCAAGCCU
CACAAUGCUAACUAGUGGGGAUUUGGCGUAACUUUGUUAGCCGCUCUCUCGUCUCAUCCGAAGCGAGGGAAAAGAUUAGG
AUUGCCCAUCACUUCCGCCUUGGGGGCUUGAGCAAAGCGAUGGAAAGAGCUUUCAACCCCAUCUAAGCAUGUAGAGACUG
GGGUGGGUUUGGCUUUCGGACUGGGGUUCGAUUCCCCACGACUCCACCA
>Campbr_lari_0447 Campylobacter lari tmRNA AAFK01000004:45127-44769; NZ_AAFK01000004:45127-44769
GGGGACGACUUGGCUUCGACAGGAGUAGAGUGGCCUUGGUGGCAUGUCGCUUUGAGCAAAGCGUAAAAAGCUCAAAUUAA
AAUUAAACGCAAACAACGUUAAAUUCGCUCCUGCUUAUGCUAAAGCUGCGUAAGUUCAGUUGAGCCUGAAUUUUAAGUGA
UACUAUCUAGCUUAGAAUUUGGUCAUUUUUGAUAGUGUAGAUUGAAAUUUGACAAAUUUUAAUUGAAAUUAAAGUCUUAG
UCUAGCUUGAAAUUUUGGAAGGUGAGUUUGGCUAGAUGAAUUUUUCACCUUUGCUAAGCAUGUAGAUGCCGUGGUUGUUU
UAUUUUUGGACAGGGGUUCAAUUCCCCUCGUCUCCACCA
>Campb_upsal_0448 Campylobacter upsaliensis tmRNA AAFJ01000006:109216-108858; NZ_AAFJ01000006:109216-108858
GGGGACGACCUGGCUUCGACAGGAGUAGUUUGACUAGGAUGGCAUACCGCUUUGGGCAAAGCGUAAAAAGCCUAAAUAAA
AUUAAACGCAAACAACGCGAAAUUUGCUCCUGCUUACGCUAAAGUUGCGUGAGUUCAGUUGAGCCUAGAGCUUGAGUGAU
ACUAUCUAGCUUAAGUUUUAGUCAUCUUUGGUAGUGUAGUUUUAAGACUUGACGCACCUUAAAGUGAAGUUUAGUCUAGU
CAAAUUUGUAAGUUUUGGAAGAUGAGCGGAAUUUGAUGAAAGAGUCAUCUUUGCUAAGUAUGUAGAGGUCUUUUUUGGGC
UAUUUUUGGACAGGGGUUCAAUUCCCCUCGUCUCCACCA
>Campb_fetus_0449 Campylobacter fetus tmRNA, version 2 {23D} AY211269:26461-26101; AANR01000002:340682-340322; NZ_AANR01000002:340682-340322
GGGGGUGACUUGGCUUCGACAGGAGUAGUGGAGUCACGGCGGCAUGCAGCUUUGGGCAAAGCUUAAAAAGCCCAAAAUAA
AAUUAAACGCAAACAACGUUAAAUUCGCUCCUGCUUACGCUAAAGCUGCGUAAGUCCAGUUGAGCCCUGCGAAACUUCAA
UGCUAUCUAGAAGCUUUAGCGGGUAAUUUUUGAUAGCUUAGAUUAAAGAAUUGACGAAUCUAUAAUUGAAAUUUAGUCUU
AGCUUAGCUAAACGCUUUGGGAAGUGAGCGAAGCUAAGUGAAACUCUCACUUCUGCUAAGCAUGUAGAGGCUAUGAAUCU
AUUAUUUUUGGACUGCAGUUCGAUCCUGCACACCUCCACCA
>Campb_fetu2_0669 Campylobacter fetus tmRNA, version 2 (ends unsequenced) AX048586:1-309; AX048587:1-309
AGGAGUAAGUCUGCUUAGAUGGCAUGUCGCUUUGGGCAAAGCGUAAAAAGCCCAAAUAAAAUUAAACGCAAACAACGUUA
AAUUCGCUCCUGCUUACGCUAAAGCUGCGUAAGUUCAGUUGAGCCUGAAAUUUAAGUCAUACUAUCUAGCUUAAUUUUCG
GUCAUCUUUGAUAGUGUAGCCUUGCGUUUGACAAGCGUUGAGGUGAAAUAAAGUCUUAGCCUUGCUUUUGAGUUUUGGAA
GAUGAGCGAAGUAGGGUGAAGUAGUCAUCUUUGCUAAGCAUGUAGAGGUCUUUGUGGGAUUAUUUUUGG
>Campbl_coli_0450 Campylobacter coli tmRNA, version 1 {RM2228} AAFL01000002:28456-28814; NZ_AAFL01000002:28456-28814; AX048591:1-311; AX048590:1-311
GGGAGCGACUUGGCUUCGACAGGAGUAAGUCUGCUUAGAUGGCAUGUCGCUUUGGGCAAAGCGUAAAAAGCCCAAAUAAA
AUUAAACGCAAACAACGUUAAAUUCGCUCCUGCUUACGCUAAAGCUGCGUAAGUUCAGUUGAGCCUGAAAUUUAAGUCAU
ACUAUCUAGCUUAAUUUUCGGUCAUUUUUGAUAGUGUAGCCUUGCGUUUGACAAGCGUUGAGGUGAAAUAAGGUCUUAGC
CUUGCUUUUGAGUUUUGGAAGAUGAGCGAAGUAGGGUGAAGUAGUCAUCUUUGCUAAGCAUGUAGAGGUCUUUGUGGGAU
UAUUUUUGGACAGGGGUUCGAUUCCCCUCGCUUCCACCA
>Campb_coli2_0670 Campylobacter coli tmRNA, version 2 (ends unsequenced) {BM2509} AX048589:1-309; AX048588:1-309
AGGAGUAAGUCUGCUUAGAUGGCAUGUCGCUUUGGACAAAGCGUAAAAAGUCCAAAUUAAAAUUAAACGCAAAUAACGUU
AAAUUUGCUCCUGCUUACGCUAAAGCUGCGUAAGUUCAGUUGAGCCCGAAACUCAAGUGAUGCUAUCUAGCUUGAAUUUU
GGUCAUCUUUGAUAGUGUAGAUUGAAAAUUGACAACUUUUAAUCGAAGUUAAAGUCUUAGUCUAGCUUGAAAUUUUGGAA
GGUGAGUUUAGCCAGAUGAAGUUUUCACCUUUGCUAAACAUGUAGAAGUCUUUGUGGGGUUAUUUUUGG
>Campb_jejun_0451 Campylobacter jejuni tmRNA AL139078:71393-71035; NC_002163:1293658-1293300; AF440332:1-307; CP000025:1448922-1448564; NC_003912:1448922-1448564; AANT01000001:325810-326168; AANQ01000001:325522-325880; NZ_AANQ01000001:325522-325880; AANJ01000005:81649-82007; NZ_AANJ01000005:81649-82007
GGGAGCGACUUGGCUUCGACAGGAGUAAGUCUGCUUAGAUGGCAUGUCGCUUUGGGCAAAGCGUAAAAAGCCCAAAUAAA
AUUAAACGCAAACAACGUUAAAUUCGCUCCUGCUUACGCUAAAGCUGCGUAAGUUCAGUUGAGCCUGAAAUUUAAGUCAU
ACUAUCUAGCUUAAUUUUCGGUCAUUUUUGAUAGUGUAGCCUUGCGUUUGACAAGCGUUGAGGUGAAAUAAAGUCUUAGC
CUUGCUUUUGAGUUUUGGAAGAUGAGCGAAGUAGGGUGAAGUAGUCAUCUUUGCUAAGCAUGUAGAGGUCUUUGUGGGAU
UAUUUUUGGACAGGGGUUCGAUUCCCCUCGCUUCCACCA
>Helcb_pylo1_0441 Helicobacter pylori tmRNA, version 1 {ATCC 43504} (ends unsequenced) U68082:22-361
AGAUUUCUUGUCGCGCAGAUAGCAUGCCAAGCGCUGCUUGUAAAACAGCAACAAAAAUAACUGUAAACAACACAGAUUAC
GCUCCAGCUUACGCUAAAGCUGCGUGAGUUAAUCUCCUUUUGGAGCUGGACUGAUUAGAAUUUCUAGCGUUUUAAUCGCU
CCAUAACCUUAAGCUAGACGCUUUUAAAAGGUGGUUCGCCUUUUAAACUAAGAAACAAGAACUCUUGAAACUAUCUUAAG
GUUUUAGAAAGUUGGACCAGAGCUAGUUUUAAGGCUAAAAACUAACCAAUUUUCUAAGCAUUGUAGAAGUUUGUGUUUAG
GGCAAGAUUUUUGGACUGGG
>Helcb_pylo2_0442 Helicobacter pylori tmRNA, version 2 {26695} AE000511:838812-838427; NC_000915:838812-838427; AX790035:225-610
GGGGCUGACUUGGAUUUCGACAGAUUUCUUGUCGCACAGAUAGCAUGCCAAGCGCUGCUUGUAAAACAGCAACAAAAAUA
ACUGUAAACAACACAGAUUACGCUCCAGCUUACGCUAAAGCUGCGUGAGUUAAUCUCCUUUUGGAGCUGGACUGAUUAGA
AUUUCUAGCGUUUUAAUCGCUCCAUAACCUUAAGCUAGACGCUUUUAAAAGGUGGUUCGCCUUUUAAACUAAGAAACAAG
AACUCUUGAAACUAUCUCAAGGUUUUAGAAAGUUGGACCAGAGCUAGUUUUAAGGCUAAAAAACCAACCAAUUUUCUAAG
CAUUGUAGAAGUUUGUGUUUAGGGCAAGAUUUUUGGACUGGGGUUCGAUUCCCCACAGCUCCACCA
>Helcb_pylo3_0443 Helicobacter pylori tmRNA, version 3 {J99} AE001439:801377-800992; NC_000921:801377-800992; AX191746:7009-6624
GGGGCUGACUUGGAUUUCGACAGAUUUCUUGUCGCACAGAUAGCAUGCCAAGCGCUGCUUGUAAAACAGCAACAAAAAUA
ACUGUAAACAACGCAGAUUACGCUCCAGCUUACGCUAAAGCUGCGUGAGUUAAUCUCCUUUUGGAGCUGGACUGAUUAGA
AUUUCUAGCGUUUUAAUCGCUCCAUAACCUUAAGCUAGACGCUUUUAAAAGGUGGUUCGCCUUUUAAACUAAGAAACAAG
AACUCUUGAAACUAUCUCAAGGUUUUAGAAAGUUGGACCAGAACUAGUUUUAAGGCUAAAAAGCUAAUCAAUUUUCUAAG
CAUUGUAGAAGUUUGUGUUUAGGACAAGAUUUUUGGACUGGGGUUCGAUUCCCCACAGCUCCACCA
>Helcb_muste_0444 Helicobacter mustelae tmRNA DQ250625:1-310
GGGGCUGAUUUGGCUUUCGACAGGAAUUGUAUCGCUUGGAUUGCAUGUCGGUAGGCAUACCGUAAUCCUGCCAGCUUAAA
UUAAACGCAAACAACAAAAAUUACGCUCCAGCUUACGCAAAAGUAGCGUAGGUUUAUCUCUGUUUUGGAGCCGAUCUUUU
UGCCAUAUCUACUAACAAAAAAGGUCGUUAUUUCGUAGGUUGCGCUUUUUUGUGUCAUCAAAAAAGCAAAGAUAAGACUG
CUUGCCUGCAAAAGAUUUUGAAAGUUGAAUCUAGCGGGCAAAAAGAUUAUUCAACUUUGCUAAGCAUGUAGAGAUCCUUG
UAGAUAUAAUUUUUGGACUGGGGUUCGAUCCCCCACAGCUCCACCA
>Helcb_hepat_0445 Helicobacter hepaticus tmRNA AE017125:1767632-1768000; NC_004917:1767632-1768000; DQ250623:1-314
GGGGCUGAUUGGCUUUCGACAGGAGCAAAGAGACUUAAGUGCAUGUGAGCUGGUAAGCUCUAAAACUACCACAAAUAAAU
AAACGCAAACAACGCAAAUUACGCUCCAGCUUACGCAAAAGUCGCGUAAGUUUAUCACACUUUUGGAGUCGGCUUAAGAA
CUUCUAAUCUAGCUAGAAUCUUUCAAGCUGUAAUCUUUGCUAGAUGCUCUUUUUGUCAUACCUUAGCAAAAAGAAAAGAA
UAAGGUUGCUUGUGGGAUUUAUCUUGGGGUGUUGGAUAACCACGAAAAGAAAACAAUACCUACUAAACAUGUAGAUUCUU
AAGAAGCUCAAGCUUUUGGACUGGGGUUCAACUCCCCACAGCUCCACCA
>Helcb_ganma_0729 Helicobacter ganmani tmRNA (ends unsequenced) DQ250622:1-314
GAAUUAGAUAGCUCUAGCUGCAUGCCGACUUGUGUUAUGUCGUAAAACUAGCAUAUAAAUAUAAACGCAAACAACGCAAA
UUACGCUCCUGCUUACGCUAAAGUUGCGUAAGUUUAAUUAGCUUUUGGAGCUGUUUUUGAACAAGGAUUCUAGCGACUUU
UCAAAAACAUCAUUUUAGCUAGAUGCGCCUUGCACUACCGAAUGCAAGUUUAAGUUUAGGUUGCCUUGAAGCAUUAUUUU
UGGAAGUUUGGUGUUUUUAAGAAAGAUUUAAAAUCCAAAUAAGCAUGUAUAUCGGCUGUUGUUGGUCUAGUUUU
>Alkph_metal_0733 Alkaliphilus metalliredigenes pre-tmRNA AAKU01000110:6473-6828; NZ_AAKU01000110:6473-6828
GGGGGCGUACUGGUUUCGACGGGGGUUUAGAGUCAUUAGUGGCGAGCCGUGUUUAGCUUGGGAUCACGUAACAAACUGAG
CAAUAAAUACAAACGCAAACGAUAAUUAUUCACUAGCUGCAGCGUAAUAGCACAGCUCGUUUCUCCUAGGCUUCCCACAG
UCUAGACAGAAACGUCAUCUUAGUGGGGAACGUCUUAAGGCUGUCGCGACCUUAAGUUGUACAAUUGUGACUAGCUGAUC
UUAAAACCCGUUGCUAGGUGUUAGGUAAAGCGAAAUUCUAAAGUAGCAACUACGCUCGUAGAAGCUGAUGGUGAAGGGCC
UUCGGACAGGGGUUCGAUUCCCCUCGCCUCCACCA
>Clost_aceto_0593 Clostridium acetobutylicum pre-tmRNA AE001437:832978-833336; NC_003030:832978-833336
GGGGGCGCUUUUGGUUUCGACGGGGAUGAUGUUACGUUUGAGAAGCGAGUCGAGGGAACCUGUGGACCCGCGUUAAAAAA
CUAUAGGCCUUAAAAAUAAAGGAUAACGAAAAUAAUUUAGCUUUAGCUGCGUAGUCAGCUAACGUCAGCCUGAGAGUCCC
GCGACUCAGAGUCUGGCGUCGACAGCGGGGAACCGAGCCUUACAAAGCUUUGAGUAAGGAACGGAAUUUAUGAAGCUACU
GAAGUGAAAAGCUUGUUUGUAGGCGUUUCAUGGAGGGAAUGUUAAAAUACAAACUGCACUCGGAGAUGCUUAAAUGAAAC
CAUUUUCGGACAGGGGUUCGAUUCCCCUCGCCUCCACua
>Clost_perf1_0594 Clostridium perfringens tmRNA, version 1 {ATCC 13124}
GGGGGCGUUUUGGCUUCGACGGGGGUAAGAUGGGUUUGAUAAGCGAGUCGAGGGAAGCAUGGUGCCUCGAUAAUAAAGUA
UGCAUUAAAGAUAAACGCAGAAGAUAAUUUUGCAUUAGCAGCUUAAUUUAGCGCUGCUCAUCCUUCCUCAAUUGCCCACG
GUUGAGAGUAAGGGUGUCAUUUAAAAGUGGGGAACCGAGCCUAGCAAAGCUUUGAGCUAGGAACGGAAUUUAUGAAGCUU
ACCAAAGAGGAAGUUUGUCUGUGGACGUUCUCUGAGGGAAUUUUAAAACACAAGACUACACUCGUAGAAAGUCUUACUGG
UCUGCUUUCGGACACGGGUUCGACACCCGUCGCCUCCACCA
>Clost_perf2_0595 Clostridium perfringens tmRNA, version 2 {13} BA000016:1526404-1526044; NC_003366:1526404-1526044
GGGGGCGUUUUGGCUUCGACGGGGGUAAGAUGGGUUUGAUAAGCGAGUCGAGGGAAGCAUGGUGCCUCGAUAAUAAAGUA
UGCAUUAAAGAUAAACGCAGAAGAUAAUUUUGCAUUAGCAGCUUAAUUUAGCGCUGCUCAUCCUUCCUCAAUUGCCCACG
GUUGAGAGUAAGGGUGUCAUUUAAAAGUGGGGAACCGAGCCUAGCAAAGCUUUGAGCUAGGAACGGAAUUUAUGAAGCUU
ACCAAAGAGAAAGUUUGUCUGUGGACGUUCUCUGAGGGAAUUUUAAAACACAAGACUACACUCGUAGAAAGUCUUACUGG
UCUGCUUUCGGACACGGGUUCGACACCCGUCGCCUCCACCA
>Clost_perf3_0671 Clostridium perfringens tmRNA, version 3 (ends unsequenced) AX048592:1-313; AX048593:1-313
ACGGGGGUAGGAUGGGUUUGAUAAGCGAGUCGAGGGAAGCAUGGUGCCUCGAUAAUAAAGUAUGCAUUAAAGAUAAACGC
ACGAGAUAAUUUUGCAUUAGCAGCUUAAGUUAGCGCUGCUCAUCCUUCCUCAAUUGCCCACGGUUGAGAGUAAGGGUGUC
AUUUAAAAGUGGGGAACCGAGCCUAGCAAAGCUUUGAGCUAGGAACGGAAUUUAUGAAGCUUACCAAAGAGGAAGUUUGU
CUGUGGACGUUCUCUGAGGGAAUUUUAAAACACAAGACUACACUCGUAGAAAGUCUUACUGGUCUGCUUUCGG
>Clost_therm_0596 Clostridium thermocellum tmRNA AABG04000021:23563-23949; NZ_AABG04000021:23563-23949
GGGGGCGUAUUGGUUUCGACGGGAUUGUUGAAGCUUGAGUAGCGGGUAGAGGAUUCUCGUUGGCCUCUUUAAAAAACGAG
AAACUAAAAUAAACGCUAACGAAGAUAAUUACGCUUUAGCUGCUGCCUAAUAUAGGCAGCCCGUCAGUCCAGGGUUCCUG
CGCCUUGGGUAGCUGGCGUCAUUAAGUCAGGCCUUUUGAGUGGGAAGGUUAAACUCUAGAACUGUCACAGUGGUAGCCUU
GAGCUGUGAUGGAUUUUAAAGGCUACUGAUAUCCAAAGCCUGCCCAUGGGCGUUGGGUUGAGGGAAUUUUUAAAACAUGG
GCUGCACCCGGAGAAGCUCUUGUGGAUACGAUUUCGGACAGGGGUUCGACUCCCCUCGCCUCCACCA
>Clost_botul_0597 Clostridium botulinum pre-tmRNA (with Group I intron)
GGGGGCGCAAUGGUUUCGACGGGGGCAAAUUGCUCCUGGGAAGCGAGUCGAAGGGAUCCUGUACCUGCGUUAAAAAACUG
GGAACUUAAAUAUAAUUGCAAACGAUAAUUUUGCAUUAGCUGCCUAAUAGUUGCAGCUCGUCAGCCUAAGAGUCCCACGA
CUUAGGGUCUGGCGUCGACAGUGGGGAACCGAGUCUUACAAAGCUUUGAGUAAGGAACGGAAUUAAUGAAGCUACUGAAU
CUAGGAGCCUGUUUAUCGGCGCUUAGAGGAGGGAAUGUAAAAGGAUAAACUGCACUCGGAGAUGCCCAGGGGUUGCUGCU
UUCGGACAGGGGUUCGAUucaaaagagucgccuuaugaagugauucauaagugaaaacuuggcuuuaucggugaaaccga
aacguaaagacgucggcaauaccgagugguauguggggaaacccaacagccguguaucgacucauagguuucuaaccuua
agaaaugaaauuuucuuaaguaagaaauacuaggauagaaguuuuaaacuauaauauagcuucuauaacaugccaaggua
cuuaaaacuuauaaguuuuaagcacgagauauagucagugccauuagagauaauggaauagcaugUCCCCUCGCCUCCAC
CA
>Clost_tetan_0598 Clostridium tetani pre-tmRNA (with Group I intron) AE015927:379582-380223; NC_004557:379582-380223
GGGGGCGUAAAUGGUUUCGACGGGGGCAAGUUGCUCCUGAGAAGCGAGUCGAGGGGUCCUGGGCCCGCGUUAAAAAACUG
GGAAAAAUUAUAAACGCAGACGAUAAUUUCGUUUUAGCUGCCUAAUUAGUGCAGCUCGUCCUACUUGGGAGUCCCACGAC
CUAAGAUAGGGCGUCAAUUAGUGGGGAACCGAGCUCUACAAAGCUUUGAGUAGAGAACGGAACUUAUGAAGCUACUGAAU
CUAGAAACCUGUUUAUCGGUGUCUAGAGGAGGGAAUGUUAAAAGGUAAACUGCACUCGGAGAUGCUCAGGGGUUACUGCU
UUCGGACAGGGGUUCGAUucauaagagucgccuuaugaagugauucauaagugaaaacuuggcuuuaucggugaaaccga
aacgugaagacgucggcaauaccgagugguauguggggaaacccaacagccguguaucgacucauagguuucuaaccuua
agaaauaaagcuuucuuaaguaagaaauacuaggauagaaguuugaaacuauaauauagcuucuauaacacgccaaggca
cuuaaaaccuauaauuuuuaagugcaauauauagucagugccauuagaaauaguggaauagcaugUCCCCUCGCCUCCAC
CA
>Clost_diffi_0599 Clostridium difficile tmRNA
GGGGGCGUAAAGGUUUCGACGUGGGUUUGGAACUUGAGGCUGCAUGUCGUGUUACUCUGGGUCACGUAAAAACUGGGGAA
CUUUAAAAUAAACGCAGACGAUAAUUUCGCGAUAGCAGCCUAGUUGCUGCUCGUCCCUCUUAGUCCUCCUGCCGACUAAG
ACUGGACGUCAUUAUGCAGGGAACUACUUUAGGGGUGUCUCGACUUGAAGUAGAUUAAUUGGGACUGGCUAAGCAUAGAG
CCUGCCACUUGGCGCUAUGUGAGGUGAGAUAUUAGUGAAGUUGGCUAAGCAUGUAGAUGCAGCAAGGAAAAGAUUUGCGG
ACAGGGGUUCGACUCCCCUCGUCUCCACCA
>Clost_diff2_0734 Clostridium difficile tmRNA AAML01000143:25109-24760
GGGGGCGUAAAGGUUUCGACGUGGGUUUGGAACUUGAGGCUGCAUGUCGUGUUACUCUGGGUCACGUAAAAACUGGGGAA
CUUUAAAAUAAACGCAGACGAUAAUUUCGCGAUAGCAGCCUAGUUGCUGCUCGUCCCUCUUAGUCCUCCUGCCGACUAAG
ACUGGACGUCAUUAUGCAGGGAACUACUUUAGGGGUGUCUCGACCUGAAGUAGAUUAAUUGGGACUGGCUAAGCAUAGAG
CCUGCCACUUGGCGCUAUGUGAGGUGAGAUAUUAGUGAAGUUGGCUAAGCAUGUAGAUGCAGCAAGGAAAAGAUUUGCGG
ACAGGGGUUCGACUCCCCUCGUCUCCACCA
>Rumin_albus_0592 Ruminococcus albus tmRNA
GGGGAUGUAAAGGUUUCGACGGGGGUCUUGAAGGGCGAUAAGCGAGUGGAGGAGCGCACUCUCCUUAAACGGCGUACGUU
UUAAAUUAGACGACAACGAUAAUUUUGCAAUGGCAGCCUAAGGGCAGCCCGUCUUGCCUGAGAGUACCACGGCUUGGGUA
AAGGCGUCGACUAGUGGUGAACGUCGGCAGGCGAUGACUGUGACCUGUCGGUGUAUUGCAGUCUACCAAAGCGAGGGGCG
UGUCUGUUUGCCCGUGCGGAGGGAAACGGCGCAAGCCGAAAUAACCGACUAGACUCGUAGAAAUUCGCGUGAAUGGGCUU
UCGGACAGGAGUUCGAUUCUCCUCAUCUCCACCA
>Destb_hafni_0590 Desulfitobacterium hafniense tmRNA AAAW03000296:1155-803; NZ_AAAW03000296:1155-803
GGGGGUGCACUGGCUUCGACGGGGGUCGCAAAAUCGCUUGGCGCAUGCCGAGGGGUAGCUUUCCUCGUAAAACAGCUGCA
AAACUCUAGUUGCCAACGACGACNAACUACGCUCUCGCCGCUUAAGGCGUAAGCCCCGAAACUGCUUGUGUCCGUGCUCG
CAGCGUAGGGUCACUAUCACGGAAUCGCCGGGAGCGGCCGCCUGCCAGCUCCCGUUCAACCUAUAGCAGGCUGGUCCUUG
GAUGCGCUUCGCGCGCCGUGCUGUCCCGGGACGAGAUCUAACGGAGCGCUAAGCAUGUAGUGCCGGGGAUGGAGUGCCUU
CGGACGGCGGUUCGAUUCCGCCCACCUCCACCA
>Caldc_sacch_0735 Caldicellulosiruptor saccharolyticus tmRNA AALW01000007:48310-48342; NZ_AALW01000007:48310-48342
GGGGGCGUGUUUUGGAAUUCGACGGGGGCAGUCGGAUUCCAAAUAGCGGGUAGUGGUUUUCUCGGUACCACUAUAAAAAA
CCGAGAAGAAAAAUAACUGCAGACAAAGCUGAACUCGCUUUAGCUGCAUAAGAUAAGCAGCUAACGUCCGCCGGAGGUGC
CCACGGCCUCCGAGUCGGGCGCCAACCCACGUGGGGCACCGAAAGUAAGGUCGCCUGAGCCUUACUUUUGGGUCAAAUCU
CAGGCUGGGGAAGAAAAAGCCUGUCAGUGGGCGUUUUCUUCCCGAGAAUUUAAGUACACUGACUGCACCCGGAGAAGUUU
GGAGUUCGAUGCCUUCGGACGGGGGUUCAAAUCCCCCCGCCUCCACCA
>Crbth_hydro_0591 Carboxydothermus hydrogenoformans tmRNA CP000141:258392-258750; NC_007503:258392-258750
GGGGGCGUAAAGGGUUCGACGGGGGAGCGAAGGGCCGAAAGUAGCGAGGCGAGGACCCCAUCUUACCUCGUUAAAAAUGG
UGGGAAAAGAUAACUGCCAACGAAAACUACGCUUUAGCUGCUUAAUAACGCAGCUACGUCCUGACGGAAGCUUGCCCGGG
GCUUCUGUCGGGGCGUGACCGGACCGGGCUGGCUUAUGAAGGGUGUCCCGGCUCUUCAUAAGCGAGAUUUUACGGGAUAG
CCCGAUUGUGGCCUGCCGGUAGGCACCAAUCGGGUGAAAGCAAAAAUACCGGCUGCCCUCGGAGAAGCUUUCGGUUCUUG
UCCUCCGGACGGUGGGUUCGAUUCCCCCCGCCUCCACCA
>Helio_mobil_0589 Heliobacillus mobilis tmRNA (ends unsequenced) AY040838:1-306
GGGGAACGUGUUUGCUUGGGAUGCGAGCCGGGUUGCCGCCAGGACCGUAAAAAGGGCGGAAGGCUUUAAUUGCCGAAGAU
AACUACGCUUUAGCUGCUUAAUUGCAGUCGAACCUCUUCUCCUCUGUGCUCUCGGUGAGGAUGUAAGGGGUCAUUUAAGA
GAGCUGGCUUCGACCAAUUCUCGGAGGUCCAAGCGAGAUUUAUCGAAUAGCCUGACCAACCUCUGUCUGCCGUGCGGAAG
GAAGGCGAAAUCUAAAACGACAGACUACGCUCGUAGUGUCCUUUGUGGGCAUUUCUUCGGACGCGG
>Thana_tengc_0586 Thermoanaerobacter tengcongensis tmRNA AE013063:8484-8834; NC_003869:989409-989759
GGGGGUGUGUUGGUUUCGACGGGGGCGGUCGAGGUAAAAGUAGCGAGCCGAGUUCUCCACCAGCUCGUAAAAAAGGUGGA
AAAAAAUAAACGCAGACAGAGAACUCGCUUACGCUGCCUAAUUAAAGGCGGCCGUCCAGCCUGAAAUGCCCACGUUUCAG
GACUGGGCGUCAAAAGAGUGGGGAACUGGUUUUGCCUGCGCCUCGGGGCAAAACCGGAAUAAUGAGGCUACCGAAGCGGU
UAUCCUGUCGCUGGGAGAACCGCUGAGGGAAAGCUAAAACAGCGACUGCGCUCGGAGAAGCUUUUACCGGGACGCCUUCG
GACCGGGGUUCGAAUCCCCGCACCUCCACCA
>Copth_prote_0587 Coprothermobacter proteolyticus tmRNA
GGGGGCGAAAAGGUCUCGACGGCGAGUCGGAGCCUUGAGCUGCAGGCAGGGUUGGCUGCCACACCUUAAAAAGGGUAGCA
AGGCAAAAAUAAAUGCCGAACCAGAAUUUGCACUAGCUGCUUAAUGUAAGCAGCCGCUCUCCAAACUGAGGCUGCAUAAG
UUUGGAAGAGCGUCAACCCAUGCAGCGGCUCUUAAGCAGUGGCACCAGCUGUUUAAGGGUGAAAAGAGUGGUGCUGGGCA
GUGCGGUUGGGCUUCCUGGGCUGCACUGUCGAGACUUCACAGGAGGGCUAAGCCUGUAGACGCGAAAGGUGGCGGCUCGU
CGGACGCGGGUUCGAUUCCCGCCGCCUCCACCA
>Moore_therm_0588 Moorella thermoacetica tmRNA CP000232:284252-284609; NC_007644:284252-284609
GGGGGCGUAAUGGUUUCGACGGGGGUAGCAUUGGCAGUAGUAGCCAGGCGAGAUCCCACCGGCUCGUUAAACGGUGGAAC
GGCUAUUAAGUGCCGACGAUAAUUUAGCUCUGGCUGCUUAAUUAAAAAGUAGCCCAUCCGUCUGGUCCUGGCCUGCGGGG
ACCAGUACCGGGUGUCAAAUCUAGCAGGCUACCGGCAAGGCCCCGGCCCGGGGGCCUGAAGGGAAUCUCAAGCGGGCUGG
CCCGAGGGUAUCCGGUUUCCGGGAGACCCGACGGCGAGAUUGAAAACGGAAACUAUCCUGGUAGAAGCUACUGUGGAUGU
ACCUUCGGACGGGGGUUCGACUCCCCCCGCCUCCACCA
>Mespl_floru_0571 Mesoplasma florum tmRNA AE017263:242816-242409; NC_006055:242816-242409
GGGGAUGUCCUGGUUUCGACAGGAUACUCUGGUCAUAUAAUAGCAGUGGUGUGGUAGACCAUAAUACUUCUAGGUUUGAU
AAAAUGCAAACAAAAACGAAGAAAACACAAACGAAGUUCCAACAUUUAUGUUAAAUGCUGGACAAGCAAAUUACGCUUUC
GCUUAAUUUGACUUAAAUACAAAUAUACGUUUGGCAAUUUUUAAUAGUCUUGGAAUCUGUUAAUUAUUGUACAUACCAAU
UCCAAUAGAAAUUAUGAUCGUAAUAAAUAAUUUUGAAACUCAAUUACGGAUGUUAUAUUAGUCUUUUGAUAAUUUUAUUU
AAUAUAGCAAAUUAGAAAAUUAUCUAAACUGUAGAAUUUAUAUGAUUCGGUAUUUUGGACGUGGGUUCGAUUCCCACCAU
CUCCACCA
>Spipl_kunke_0572 Spiroplasma kunkelii tmRNA
GGGGAUGUUCCGGUUUCGACAGGAAUGAUCUACUAAUAUUGGCAGUAGUUUAGUAGACUAUAAUGCUACUAGGUUUGAAG
AAACGCAAGCAAAAAACAAAAAGAAGACAAAAUUGAAAUGCCAGCUUUUAUGAUGAACAAUCAAUUAGCAGUAUCAAUGU
UAGCAGCUUAAUUCCUCGCUGUUAGAGGAUCGCUAGCCGUAAUAGUAGUUAAUUGUAGAUUAUUAACUAUUAUCGUAUCU
CAAGUCUUAAUCUAAUAGAAAUUCUAAUUGAUAAUGUUAGAAUUUUGAAAGUCUUAUUAUCUAAUUAUUUAAUUAGUUGU
CUAAUCCUAUUAUUAAAUAAUGAAAAAAAGAUGAUUAGACUAAACUGUAGAAGAUAUUAGAAUGUUAUUUGUGGACGCGG
GUUCAAUUCCCGCCAUCUCCACCA
>Mycpl_capri_0573 Mycoplasma capricolum tmRNA S67602:1-411; D13067:138-548; CP000123:876502-876092; NC_007633:876502-876092
GGGGAUGUCAUGGAUUUGACAGGAUAUCUUUAGUACAUAUAAGCAGUAGUGUUGUAGACUAUAAAUACUACUAGGUUUAA
AAAAACGCAAAUAAAAACGAAGAAACUUUUGAAAUGCCAGCAUUUAUGAUGAAUAAUGCAUCAGCUGGAGCAAACUUUAU
GUUUGCUUAAUAACUACUAGUUUAGUUAUAGUAUUUCACGAAUUAUAGAUAUUUUAAGCUUUAUUUAUAACCGUAUUACC
CAAGCUUAAUAGAAUAUAUGAUUGCAAUAAAUAUAUUUGAAAUCUAAUUGCAAAUGAUAUUUAACCUUUAGUUAAUUUUA
GUUAAAUAUUUUAAUUAGAAAAUUAACUAAACUGUAGAAAGUAUGUAUUAAUAUAUCUUGGACGCGAGUUCGAUUCUCGC
CAUCUCCACCA
>Mycpl_mycoi_0574 Mycoplasma mycoides tmRNA BX842642:196112-196522; NC_005364:196112-196522
GGGGAUGUCAUGGAUUUGACAGGAUAUAACCAGUACAUAUAAGCAGUAGUGUUGUAGACUAUAAAUACUACUAGGUUUGA
AAAAACGCAGACAAAAACGAAGAAAACUUUGAAAUGCCAGCAUUUAUGAUCAACAAUGCAUCAGCUGGAGCAAACUAUAU
GUUUGCUUAAUAACUACUUAGUUUAGUUAUAGUAUUUCACGCAUUAUAGAUAUUUUAGGCUUUAUUUAUAAUCGUAUUAC
CCAAGUCUAAUAGGAUAUAUGAUUGCAAUAAAUAUAUCUGAAAUUAAUUGCAAAUGGUAUUUAACCUUUAGUUAAUUUUA
GUUAGAUACUUUAAUUAGAAAAUUAACUAAACUGUAGAAAGUAUGUAUUAGUGUAUCUUGGACGCGAGUUCGAUUCUCGC
CAUCUCCACCA
>Urepl_parvu_0575 Ureaplasma parvum tmRNA AE002154:2543-2131; NC_002162:688884-688472
GGGGAUGUCACGGUUUCGACGUGACACAUUAAUUUUUAAUUGCAGUGGGGUUAGCCCCUUAUCGCUUUCGAGGCAUUUUA
AAUGCAGAAAAUAAAAAAUCUUCUGAAGUAGAAUUAAACCCAGCGUUUAUGGCUUCAGCUACUAAUGCAAACUACGCUUU
UGCGUACUAAUUAGUUAUUAGUAGAAACGUUCAUUAACAUAAUUACUAUUGGUUGGUUUUUGGGCUUAUUUUACAAUAGU
UUUAAAUUUAAAAUUCUUAUUUGUUGUUUAAAUUUAAAUAGAUUUAACAAAUAGUUAGUUAAUUUUAAAUUUGUUUUAUU
AGUUAUUAACUACACUAUUUUUAAUAAAACUAAACUGUAGAUAUUAUUAAUUAUGUGUUGCGGAAAGGGGUUCGACUCCC
CUCAUCUCCACCA
>Mycpl_pulmo_0576 Mycoplasma pulmonis tmRNA AL445565:151623-152009; NC_002771:800423-800809
GGGGAUGUAAUGGUUUCGACAGGCAUUUAUAACCUUAUAAUGCAGUAGUUUGGCAGACUAUAAUGCUACUAGGCGUUUCA
AUAAACGGAACAAAAAAACAAGAAAAUGACUAUCAAGAUUUAAUGAUUAGUCAAAAUCUAAACCAAAAUCUAGCUUUUGC
UAGCGUUUAGCAGCUAGUUGCUCCAUUAUAUGUUCUGGAUAAUGGAAGCAUGCCUAAGAACUUAGUGAAGUUGCUCUAGC
GUCAAUUUCAUGAAAUUUAGCUAGUUGAUUUAAUAGAAUUUUGUUCAAUUUUUUCUAUUAAAUCAACAAUUAAAAAUUGG
AAUAAACUGUAGAUUUAUAAGCAUUGUGAAUGUGUGGACCCGGGUUCGACUCCCGGCAUUUCCACCA
>Mycpl_mobil_0577 Mycoplasma mobile tmRNA AE017308:634688-634313; NC_006908:634688-634313
GGGGGUGUAAUGGAUUUGACAUGCAUAAGGUUUAUUAGACUGCAGUACUAUGGUAGAGUAUAAGACCACUAGGCUUUUUC
AAACGGAAAAGAAAAACAAUUAGAAGUUUCUCCUUUAUUAAUGAGUUCUUCACAAUCAAAUCUAGUUUUUGCUUAAUUAA
AAAUUAGUCGCUUCUAAGUGGUGUUGCUACAUUUAUAAGUGUUGUUUAGCAAAUAUAGUUUUAUGAUCUAAUUAAAUAAG
ACCGAAUAAAAAAUUAGUUAAUAUAAAUGUUUUUAGUUAAGUUUCGAUUUUAUAUUAAUAUCAAAAUUUAGCUAAACUGU
AGAUGUCUCUUAAAUUUUAUGUGUGGACCCGGGUUCAACUCCCGGCAUCUCCACCA
>Uncul_toxo1_0640 Uncultured toxoplasma1 tmRNA (5-prime end unsequenced) AF092791:1-359
CUUCGACAUACAUAAAAGGAUAUAAAUUGCAGUGGUCUUGUAAACCAUAAGACAAUUUCUUUACUAAGCGGAAAAGAAAA
CAAAAAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAAAAAACUAGUAGAC
CAAUUUGCUUCUCACGAAUUGUAAUCUUUAUAUUAGAGAAUAGUUAAAAAUCUGAUCACUUUUUAAUGAAUUUAUAGAUC
ACAGGCUUUUUUAAUCUUUUUGUUAUUUUAGAUAAAGAGUCUUCUUAAAAAUAACUAAACUGUAGUAAUUUAUAUUUAAU
UAUGUGUGGACCCSGGUUCAACUCCCGGVAUCUCCACCA
>Uncul_toxo2_0641 Uncultured toxoplasma2 tmRNA (5-prime end unsequenced) AF092786:1-360
CUUCGACAUACAUAAAAGGAUAUAAAUUGCAGUGGUCUUGUAAACCAUAAGACAAUUUCUUUACUAAGCGGAAAAGAAAA
CAAAAAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAAAAAACUAGUAGAC
CAAUUUGCUUCUCACGAAUUGUAAUCUUUAUAUUAGAGAAUAGUUAAAAAUCUGAUCACUUUUUAAUGAAUUUAUAGAUC
ACAGGCUUUUUUAAUCUUUUUGGUAAUUUUAGAUAAAGAGUCUUCUUAAAAAUAACUAAACUGUAGUAAUUUAUAUUUAA
UAAUGUGUGGACCCGGGUUCAACUCCCGGCAUCUCCACCA
>Uncul_humn4_0646 Uncultured human4 tmRNA (5-prime end unsequenced) AF120328:3-362
GCUUCGGCAUACAUAAAAGGAUAUAAAUUGCAGUGGUCUUGUAAACCAUAAGACAAUUUCUUUACUAAGCGGAAAAGAAA
ACAAAAAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAAAAAACUAGUAGA
CCAAUUUGCUUCUCACGAAUUGUAAUCUUUAUAUUAGAGAAUAGUUAAAAAUCUGAUCACUUUUUAAUGAAUUUAUAGAU
CACAGGCUUUUUUAAUCUUUUUGUUAUUUUAGAUAAAGAGUCUCCUUAAAAAUAACUAAACUGUAGUAAUUUAUAUUUAA
UUAUGUGUGGACCCGGGUUCAACUCCCGGCAUCUCCACCA
>Uncul_humn5_0647 Uncultured human5 tmRNA (ends unsequenced) CB113832:1-225
UUGCAGUGGUCUUGUAAACCAUAAGACAAUUUCUUUACUAAGCGGAAAAGAAAACAAAAAAGAAGAUUAUUCAUUAUUAA
UGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAAAAAACUAGUAGACCAAUUUGCUUCUCACGAAUUGUAAUC
UUUAUAUUACAGAAUAGUUAAAAAUCUGAUCACUUUUUAAUGAAUCUAUAGAUCACAGGCUUUUUNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCUUUUU
>Uncul_humn6_0648 Uncultured human6 tmRNA (3-prime end unsequenced) BF990150:19-336
GGGGGUGUACUGGCUUCGACAUACAAAAGGAUAUAAUUGCAGUGGUCUUGUAAACCAUAAGACAAUUUCUUUACUAAGCG
GAAAAGAAAACAAAAAAGAAGAUUAUUCAUUAUUAAUGAAUGCUUCAACUCAAUCAAAUCUAGCUUUUGCAUUUUAAAAA
ACUAGUAGACCAAUUUGCUUCUCACGAAUUGUAAUCUUUAUAUUAGAGAAUAGUUAAAAAUCUGAUCACUUUUUAAUGAA
UUUAUAGAUCACAGGCUUUUUUAAUCUUUUUGUUAUUUUAGAUCAAGAGUCUUCUUAAAAAUAACUAAACUGUUGUAA
>Mycpl_penet_0578 Mycoplasma penetrans tmRNA BA000026:384147-384551; NC_004432:384147-384551
GGGGAUGUCACGGUUUCGACAUGAAUGGUUGAUCUUCAAAUGCAGCAGGGUAAGCCCUUUACAGCUGUCGAGGCUAAUAA
AUGCUAAGAACAAUAAAAACGAAGCUGUUGAAGUAGAAUUAAACGACUUUGAAAUCAACGCUUUAAGCCAAAACGCUAAU
UUAGCUUUAUACGCUUAAUUACAUUUGGUAAUAAGUUCAUAUCUUUUUCUAGGUAGGUAUGAAUGUUUAAUAACUAGAUA
GCUAAUUUAAUUCCUAUAACAAUUAGUGAAGUUCGUUAGGAUUACUUUUAUUUAUGGGUUGUUCUUUGCCUCUAUUUAAA
AGGACAUAUUAAAGUUAGAACUAAGCUGUAGAUUUUGUCGCAUUGCUAUUUGUGGAAACGGGUUCGACUCCCGUCAUCUC
CACCA
>Mycpl_arthr_0579 Mycoplasma arthritidis tmRNA
GGGGGUGUAAUGGCUUCGACAGGCACUGGAUUUAAUAAAUUGCAGUGGUUGGUAACCUAAAACCAUCUAGGCUUUUUUAA
ACGGAAACUUAGAAACUUCUGAAGACAAGAAACUUGAUCUUCAAUUUGUGAUGAACUCACAAACACAACAAAAUCUACUA
UUUGCUUAAUAAAUCGUAGUCAGGCGAAUAUAUUAGUUUCAAAUAUUUGCUUUGUCGCUUAGGAACUAUGCCUUAACUAA
AGUAGCUAAGUUAAGUGUUAAAUAAUUGCUACUCAAAUUUAUUGACAUUUGUUAAUUAGAUAAAUAAAUGGGUCUUUCAC
UUAAUUAACUAAACUUGUAGACAUUUAUUAAUGAAAGUGUGUGGACCGGGGUUCGAUUCCCCGCAUCUCCACCA
>Mycpl_genit_0580 Mycoplasma genitalium tmRNA L43967:406542-406929; AR300198:406541-406928X; NC_000908:406541-406928X; AY911530:1-350; AAGX01000013:8741-9128; NZ_AAGX01000013:8741-9128
GGGGAUGUUUUGGGUUUGACAUAAUGCUGAUAGACAAACAGUAGCAUUGGGGUAUGCCCCUUACAGCGCUAGGUUCAAUA
ACCGACAAAGAAAAUAACGAAGUGUUGGUAGAUCCAAAUUUGAUCAUUAACCAACAAGCAAGUGUUAACUUUGCUUUUGC
AUAAGUAGAUACUAAAGCUACAGCUGGUGAAUAGUCAUAGUUUGCUAGCUGUCAUAGUUUAUGACUCGAGGUUAAAUCGU
UCAAUUUAACCUUUAAAAAUAGAACUUGUUGUUUCCAUGAUUGUUUUGUGAUCAAUUGGAAACAAGACAAAAAUCCACAA
AACUAAAAUGUAGAAGCUGUUUGUUGUGUCCUUUAUGGAAACGGGUUCGAUUCCCGUCAUCUCCACCA
>Mycpl_pneum_0582 Mycoplasma pneumoniae tmRNA U00089:571825-572211; NC_000912:571825-572211
GGGGAUGUAGAGGUUUUGACAUAAUGUUGAAAGGAAAACAGUUGCAGUGGGGUAUGCCCCUUACAGCUCUAGGUAUAAUA
ACCGACAAAAAUAACGACGAAGUUUUGGUAGAUCCAAUGUUGAUCGCUAACCAACAAGCAAGUAUCAACUACGCUUUCGC
UUAGAACAUACUAAAGCUACACGAAUUGAAUCGCCAUAGUUUGGUUCGUGUCACAGUUUAUGGCUCGGGGUUAACUGGUU
CAACUUAAUCCUUAAAUUAUGAACUUAUCGUUUACUUGUUUGUCUUAUGAUCUAAAGUAAGCGAGACAUUAAAACAUAAG
ACUAAACUGUAGAAGCUGUUUUACCAAUCCUUUAUGGAAACGGGUUCGAUUCCCGUCAUCUCCACCA
>Mycpl_hyop1_0583 Mycoplasma hyopneumoniae tmRNA, version 1 AE017332:424708-424285; NC_006360:424708-424285; AE017244:434781-434358; NC_007332:434781-434358
GGGGGUGUUUUGGUUUUGACAAUUAAAAAAAAUUUCUAAGAUGCAGUGGUUUGGUAGACCAUAAUACCGAAAUAAUCAAA
ACGCAAAAAAUUCAAAAAAAUCUCCAAACGAAGCAAAAAUUGAUUACCCAUUUUUAUCAUAUAACCAAUUAAAUUUUGCA
UACGUUUAAUCAAUUUAUUAUAAUAUAUCCUUAAAAAUUUAAAUUUUAUCAUGUAUACGGGCCUCCCAUUUCUGUAGCUU
GAAAAAUAUUUAAAUUUAGAUAAUCAAACUUAUAAGAUUAUCCUCCUUAGUUUUAUUUAAGAAUGCUUACUCCUUUACUU
AUUCUUAAUUUUAAAUAAACUUUUUAUUUCUAGUAGCUUGAAAACUGUCGACUCUAUUAAUUUUUUUUAUUUGGAUCGGG
GUUCGAUUCCCCGCACCUCCACCA
>Mycpl_hyop2_0738 Mycoplasma hyopneumoniae tmRNA, version 2 AE017243:418298-417866; NC_007295:418298-417866
GGGGGUGUUUUGGUUUUGACAAUUAAAAAAAAUUUCUAAGAUGCAGUGGUUUGGUAGACCAUAAUACCGAAAUAAUCAAA
ACGCAAAAAAUUCAAAAAAAUCUCCAAACGAAGCAAAAAUUGAUUACCCAUUUUUAUCAUAUAACCAAUUAAAUUUUGCA
UACGUUUAAUCAAUUUAUUAUAAUAUAUCCUUAAAAAUUUAAAUUUUAUCAUGUAUACGGGCCUCCCAUUUCUGUAACUU
GAAAAAUAUUUAAAUUUAGAUAAUCAAACUUAUCAAACUUAUAAGAUUAUCCUCCUUUCAAUUUAUUAUAAUAUAUCCUU
AAAAAUUUAAAUUUUAUCAUGUAUACGGGCCUCCCAUUUCUGUAACUUGAAAACUGUCGACUCUAUUAAUUUUUUUUAUU
UGGAUCGGGGUUCGAUUCCCCGCACCUCCACCA
>Mycpl_galli_0584 Mycoplasma gallisepticum tmRNA AE015450:507776-507369; NC_004829:507776-507369
GGGGAUGUCAAGGCUUCGACAUGAUUGAUAAACUUAUUAGUUCAGUAGGGUCUGCCCUUUAUAGCUCAAGGUAAUAAUAA
CCGACAAAACUUCUAAAGAACUAGCUGACGAAAACUUUGUUUUAAAUCAGUUAGCAUCAAACAACUACGCUUUAAACUUC
UAAAUAAAUAAUAAAUAGCGUACUAGGUUUUUUAAAAACCUAGAUUUAUAGGAUAAAACUAGAUUUUGUAACUCGUUUUU
AGUUUUACUAUUAAUACUGAUUAAUUAGUUUUUUGACCCAACGAUUACUACGAACCAAGAUGUUGAUACUUAUCACUUGG
UUUGAGCUUCAUAAGUAUCUAAACUGUAAAUAAAACUAAUUUGCUGAGUCGAUUGUGGAAACGGGUUCGAUUCCCGUCAU
CUCCACCA
>Phtpl_aste1_0585 Phytoplasma asteris tmRNA, version 1 AP006628:770004-770426; NC_005303:770004-770426
GGGGAUGUUUUGGAUUUGCCAGGUAACGAAAUUUAUAUAGCAUAUCUUGGUUACGCAAGUAAAAACGUCGAGGUUAUAAU
AACCGGAAAUAACAAACAAACUGUAACAAAUACACAAGAUUUUGCUGGACAAACUCCAGUUUAUCAAAUGAAUUUUGCAA
ACAGUUUUUCUUCACAAUUAGCUUUUGCUUAAAUAAAUAAGCAAAAACCGCACUUAAAUUAACUUACGAUUUAAGGAAGG
CAAUAAGGUAAGUUUUGCUAAUUGGGUUUGUCUUUGCUCUUUUAGCAAAUAUCAAAAAGACUAGUAAUUUAUGGAUUUUG
UUUGUUUUUUCAUAAAUUGCGAACUUACAAAAUAAACUAAAUAUGUAGAAUAUAUAAAUUAAAGUGAUUUUGUACAUGGG
UUCGACUCCCAUCAUCUCCACCA
>Phtpl_aste2_0739 Phytoplasma asteris tmRNA, version 2 CP000061:83685-83260; NC_007716:83685-83260
GGGGAUGUUUUGGAUUUGCCAAGGUCAACGAAAUUUAUAUAGCAUAUCUUGGUUAUGCAAGUAAAAACGUCGAGGUUAUA
AUAACCGGAAAUAAAAAACAAACUGCAACAAAUACACAAGAUUUUGCUGGACAAACUCCAGUUUAUCAAAUGAAUUUUGU
AAACAGUUUUUCUUCACAAUUAGCUUUUGCUUAAAUAAAUAAGCAGAACCCGCACUUAAAUUAACUUACGAUUUAAGGAA
GGAAAUAAGGUAAGUUUUGCUAUUUGAGUUUGUCUUUGCUCUUUUAAGCAAAUAUCAAAAAGACUAGUAAUUUAUGGAUU
UUGUUUGUUUUUUCAUAAAUUGCAAAACCACAAAAUAAACUAAAUAUGUAGAAUAUAUAAAUUAAAGUGAUUUUGCACAU
GGGUUCGACUCCCAUCAUCUCCACCA
>Paeni_larva_0486 Paenibacillus larvae pre-tmRNA
GGGGGCGUUUUUGGAUUCGACGGGGAUAGUUCGAGCAUGGGUAGCGGGUAGUGGGGACGCGUCCGCUUUAUCAACGCUAA
CGCCAAAUUUAAACGGCAAACAACAAAACAACUACGCUUUAGCAGCUUAAUAACCUGCUUGCGUGCUCCUGCUUUGCAUC
GCCCAUGUGCCAAGUUAGGGGCUCAACUUUAGUGGGCUACGCUGUCUAGUCUCCGCCUGAGGCUAGCUGAAGAAGACAAU
CAGGCUGACCUGUGAGAAAGCCGGUUACGGGGCGGGCUUACAGGUGACAUUAAAACCGUGACUACACCCGUAGAAGCCUA
UGUGGCGUUAUCUUUGGACACGGGUUCGACUCCCGUCGCCUCCAuau
>Paeni_macer_0487 Paenibacillus macerans tmRNA (ends unsequenced) AY911524:1-315
AGGGAUAGUUCGAGCUUAGGUUGCGAGUCGAGGGGAUCGGCCUCGUUAAAACGUCAAAGCCUAUAACUGGCAAACAACAA
AACAACUUCGCUUUAGCUGCUUAAUAGCGCUUAGCGGUUCCUCCCUCCAUUGCCCAUGUGGUAGGGUAAGGGACUCACUU
UAAGUGGGCUACGCCGGAUUCCACCGUCUGAGGAAGAAGGAAGAGAACAACCAGACUAGCUCAUCGGACGCCCGUCAGCA
GGCAGAAGAAUGAGCGAAUCGCGAAUAUGUUGACUACACUCGUAGAAGCUUAAGUGCCGAUGUUUCUGGACGUGG
>Bacil_anthr_0488 Bacillus anthracis tmRNA AAAC01000001:176409-176055; NZ_AAAC02000001:176409-176055; AE016879:4834737-4834383; NC_003997:4834737-4834383; AAEQ01000042:30182-29828; NZ_AAEQ01000042:30182-29828; AAER01000034:105304-105658; NZ_AAER01000034:105304-105658; AE017334:4834863-4834509; NC_007530:4834863-4834509; AE017225:4836072-4835718; NC_005945:4836072-4835718; AAES01000020:28815-28461; NZ_AAES01000020:28815-28461; AAEN01000018:224470-224824; NZ_AAEN01000018:224470-224824; AAEO01000027:224535-224889; NZ_AAEO01000027:224535-224889; AAEP01000006:53-407; NZ_AAEP01000006:53-407
GGGGACGUUACGGAUUCGACAGGGAUAGUUCGAGCUUAGGUUGCGAGUCGAGGGGAUCGGCCUCGUUAAAACGUCAAAGC
CUAUAAUUGGCAAACAAAACAAUCUUUCUUUAGCUGCUUAAUUGCACUAAAGGUUCCUCCCUCCAUCGUCCAUGUGGUAG
GGUAAGGGACUCAAACUAAGUGGACUACGCCGGAGUUCGCCGUCUGAGGACAAAGGAAGAGAACAACCAGACUAGCAACU
UGGAAGCCUGUCGAUAGGCCGAAGAGUUCGCGAAAUGCUAAUAUAUCGACUACACUCGUAGAAGCUUAAGUGCCGAUAUU
UUUGGACGUGGGUUCGACUCCCACCGUCUCCACCA
>Bacil_thur1_0489 Bacillus thuringiensis tmRNA, version 1 (ends unsequenced) AY491433:1-311
AGGGAUAGUUCGAGCUUAGGUUGCGAGUCGAGGGGAUCGGCCUCGUUAAAACGUCAAAGCCUAUAAUUGGCAAACAAAAC
AAUCUUUCUUUAGCUGCUUAAUUGCACUAAAGGUUCCUCCCUCCAUCGUCCAUGUGGUAGGGUAAGGGACUCAAACUAAG
UGGACUACGCCGGAGUUCGCCGUCUGAGGACAAAGGAAGAGAACAACCAGACUAGCAACUUGGAAGCCUGUCGAUAGGCC
GAAGAGUUCGCGAAAUGCUAAUAUAUCGACUACACUCGUAGAAGCUUAAGUGCCGAUAUUUUUGGACGUGG
>Bacil_thur2_0490 Bacillus thuringiensis tmRNA, version 2 {97-27} AE017355:4856870-4856516; NC_005957:4856870-4856516
GGGGACGUUACGGAUUCGACAGGGAUAGUUCGAGCUUAGGUUGCGAGUCGAGGGGAUCGGCCUCGUUAAAACGUCAAAGC
CUAUAAUUGGCAAACAAAACAAUCUUUCUUUAGCUGCUUAAUUGCACUAAAGGUUCCUCCCUCCAUCGUCCAUGUGGUAG
GGUAAGGGACUCAAACUAAGUGGACUACGCCGGAGUUCGCCGUCUGAGGACAAAGGAAGAGAACAACCAGACUAGCAACU
UGGAAGCCUGUCGAUAGGCCGAAGAGUUCGCGAAACGCUAAUAUAUCGACUACACUCGUAGAAGCUUAAGUGCCGAUAUU
UUUGGACGUGGGUUCGACUCCCACCGUCUCCACCA
>Bacil_cere1_0491 Bacillus cereus tmRNA, version 1 {ATCC 14579, G9241} AE016877:5030657-5030303; NC_004722:5030657-5030303; AAEK01000016:66183-66537; NZ_AAEK01000016:66183-66537
GGGGACGUUACGGAUUCGACAGGGAUAGUUCGAGCUUAGGUUGCGAGUCGAGGGGAUCGGCCUCGUUAAAACGUCAAAGC
CUAUAAUUGGCAAACAAAACAAUCUUUCUUUAGCUGCUUAAUUGCACUAAAGGUUCCUCCCUCCAUCGUCCAUGUGGUAG
GGUAAGGGACUCAAACUAAGUGGACUACGCCGGAGUUCGCCGUCUGAGGACAAAGGAAGAGAACAACCAGACUAGCAACU
UGGAAGCCUGUCGAUAGGCCGAAGAGUUCGCGAAAUGCUAAUAUAUCGACUACACUCGUAGAAGCUUAAGUGCCGAUAUU
UUUGGACGUGGGUUCGACUCCCACCGUCUCCACCA
>Bacil_cere2_0492 Bacillus cereus tmRNA, version 2 {ATCC 10987} AE017194:4827856-4827502; NC_003909:4827856-4827502
GGGGACGUUACGGAUUCGACAGGGAUAGUUCGAGCUUAGGUUGCGAGUCGAGGGGAUCGGCCUCGUUAAAACGUCAAAGC
CUAUAAUUGGCAAACAAAACAAUCUUUCUUUAGCUGCUUAAUUGCACUAAAGGUUCCUCCCUCCAUCGUCCAUGUGGUAG
GGUAAGGGACUCAAACUAAGUGGACUACGCCGGAGUUCGCCGUCUGAGGACAAAGGAAGAGAACAACCAGACUAGCAACU
UGGAAGCCUGUCGAUAGGCUGAAGAGUUUGCGAAAUGCUAAUAUAUCGACUACACUCGUAGAAGCUUAAGUGCCGAUAUU
UUUGGACGUGGGUUCGACUCCCACCGUCUCCACCA
>Bacil_cere3_0493 Bacillus cereus tmRNA, version 3 {ZK} CP000001:4909622-4909268; NC_006274:4909622-4909268
GGGGACGUUACGGAUUCGACAGGGAUAGUUCGAGCUUAGGUUGCGAGUCGAGGGGAUCGGCCUCGUUAAAACGUCAAAGC
CUAUAAUUGGCAAACAAAACAAUCUUUCUUUAGCUGCUUAAUUGCACUAAAGGUUCCUCCCUCCAUCGUCCAUGUGGUAG
GGUAAGGGACUCAAACUAAGUGGACUACGCCGGAGUUCGCCGUCUGAGGACAAAGGAAGAGAACAACCAGACUAGCAACU
UGGAAGCCUGUCGAUAGGCCGAAGAGUUCGCGAAACGCUAAUAUAUCGACUACACUCGUAGAAGCUUAAGUGCCGAUAUU
UUUGGACGUGGGUUCGACUCCCACCGUCUCCACCA
>Bacil_megat_0494 Bacillus megaterium tmRNA (ends unsequenced) AF019911:1-242
AGGGUAGUUCGAGCUUAGGUUGCGAGUCGAGGAGAUGGCCUCGUUAAAACAUCAACGCCAAUAAUAACUGGCAAAUCUAA
CAAUAACUUCGCUUUAGCUGCAUAAUAGUAGCUUAGCGUUCCUCCCUCCAUCGCCCAUGUGGUAGGGUAAGGGACUCACU
UUAAGUGGGCUACGCCGGAGUUCGCCGUCUGAGGACGAAGGAAGAGAAUAAUCAGACUAGCGACUGGGACGCCUGUUGGU
AGGCAGAACAGCUCGCGAAUGAUCAAUAUGCCAACUACACUCGUAGACGCUUAAGUGGCCAUAUUUCUGGACGUGG
>Bacil_halod_0495 Bacillus halodurans pre-tmRNA BA000004:3652617-3652257; NC_002570:3652617-3652257
GGGGACGUUCUGGAUUCGACAGGAAUAGGUCGAGCUUAAGUGGCGAGCCGAGGUGGCGAACUCGUUAAAACGCCAUCGCC
AAUAACUGGCAAAGAAAACAACAACUUCGCAUUAGCUGCCUAAGCUAGCAAAUGCGGUUCCGCCCUCCAUCGCCCAUGUG
GUAGGUGUCGGGACUCACUUUUAGUGGGCUACGCCUCUCACCCUCCGUCUGUGGGUGAAGGAAGAGAUUUAUCAGACUAG
CCUUACGGAAGCCUGUCGCUGGGCUGAAGUAACGGCGAAAUGCGAAUACAGUGACUACGCUCGUAGAAGCUUAAGUACUC
GUUAUUUCUGGACGUGGGUUCGAUUCCCACCGUCUCCAuuu
>Bacil_claus_0496 Bacillus clausii pre-tmRNA AP006627:3123303-3122949; NC_006582:3123303-3122949
GGGGACGUUUUGGAUUCGACAGGGAUAGGUCGAGCUUGCGUUGCGAGCCGAGGGGUCGGCCUCGUAAAAACGCACAAGCC
AAUAACUGGCAAAGAAAACAACAACUUCGCUCUAGCUGCAUAAGCUAAGCGGUCUCUCCUCUCCAUCGCCCAUGUGGAGU
GGCUGAGACUCAACUUUAGUGGGAUACGCCUUUCUCCCCCCGCCUGAGGGAGAAGGAAGAGACUAAUCAGGCUAGCUGCA
CGGAGGCCUGUCUUUGGGCUGAAGUGCUAGCGAAAUACGAAUACAAAGACUACGCUCGUAGAAGCGUAAGUGUCGUUAUC
UCUGGACGUGGGUUCAAUUCCCACCGUCUCCAuau
>Bacil_subti_0497 Bacillus subtilis pre-tmRNA D25231:121-484; AY911528:1-319; Z99121:35763-35401; NC_000964:3450101-3449739; AF375588:1-314; AF440331:1-311
GGGGACGUUACGGAUUCGACAGGGAUGGAUCGAGCUUGAGCUGCGAGCCGAGAGGCGAUCUCGUAAACACGCACUUAAAU
AUAACUGGCAAAACUAACAGUUUUAACCAAAACGUAGCAUUAGCUGCCUAAUAAGCGCAGCGAGCUCUUCCUGACAUUGC
CUAUGUGUCUGUGAAGAGCACAUCCAAGUAGGCUACGCUUGCGUUCCCGUCUGAGAACGUAAGAAGAGAUGAACAGACUA
GCUCUCGGAAGGCCCGCCCGCAGGCAAGAAGAUGAGUGAAACCAUAAAUAUGCAGGCUACGCUCGUAGACGCUUAAGUAA
UCGAUGUUUCUGGACGUGGGUUCGACUCCCACCGUCUCCAuac
>Bacil_liche_0498 Bacillus licheniformis pre-tmRNA CP000002:3469350-3468995; NC_006270:3469350-3468995; AE017333:3469521-3469166; NC_006322:3469521-3469166
GGGGACGUUACGGAUUCGACAGGGACGGAUCGAGCUUGAGCUGCGAGCCGAGAGGCGAUCUCGUAAAAACGCACCUAAAU
AUAACUGGCAAAUCUAACCAGAACUUAGCACUAGCUGCCUAAUUAGCGCAGCGAGCUCUUGCCCGCAUCGCCUAUGUGCC
GGUUAAGAGCCCAUAACGAAGUAGGCUACGCUUGCGCCCCCGUCUGAGGGCGCAGGAAGAGACUCAUCAGACUAGCUCUC
CUAGGGCCCGCCCGCAGGCACGAAGAUGAGCGAAACUAAAUAUGCAGGGCUACGCUCGUAGACGCUGAAGCAAUCGACGU
UUCUGGACGUGGGUUCGACUCCCACCGUCUCCAucu
>Geobl_stear_0499 Geobacillus stearothermophilus pre-tmRNA AY911529:1-308
GGGGACGAUCCGGAUUCGACAGGGGUAGGUCGAGCUUAAGCGGCGAGCCGAGGGGGACGUCCUCGUAAAAACGUCACCUA
AAGAUAACUGGCAAACAAAACUACGCUUUAGCUGCCUAAUUGCUGCAGCUAGCUCCUCCCGCCAUCGCCCGCGUGGCGUU
CGAGGGGCUCAUAUGAAGCGGGCUACGCCCAAAUCCGCCGCCUGAGGAUGAGGGAAGAGAUGAACCAGGCUAGCCGCCGG
GAGGCCUGUCGGUAGGCGGAACGGACGGCGAAGCGAAAUAUACCGACUACGCUCGUAGAUGCUUAAGUGGCGAUGCCUCU
GGACGUGGGUUCGACUCCCACCGUCUCCAuuu
>Geobl_kaust_0500 Geobacillus kaustophilus pre-tmRNA BA000043:3063829-3063478; NC_006510:3063829-3063478
GGGGACGAUCCGGAUUCGACAGGGGUAGGUCGAGCUUAAGCGGCGAGCCGAGGGGGACGUCCUCGUAAAAACGUCACCUA
AAGAUAACUGGCAAACAAAACUACGCUUUAGCUGCCUAAUUGCUGCAGCUAGCUCCUCCCGCCAUCGCCCGCGUGGCGUU
CGAGGGGCUCAUAUGAAGCGGGCUACGCCCAAAUCCGCCGCCUGAGGAUGAGGGAAGAGACGAACCAGGCUAGCCGCCGG
GAGGCCUGUCGGUAGGCGGAACGGACGGCGAAGCGAAAUAUACCGACUACGCUCGUAGAUGCUUAAGUGGCGAUGCCUCU
GGACGUGGGUUCGACUCCCACCGUCUCCAuuu
>Exiguoba_sp_0501 Exiguobacterium sp. pre-tmRNA AADW02000022:4016-4374; NZ_AADW02000022:4016-4374
GGGGACGUUACGGAUUCGACGGGGGUAGUUCGGUCUUCUGUGGCGUGUCGAGGGGUCGGCCUCGUUAAAACGCAUCAGCC
AUAACUGGCAAAACUAACACACAACUCGCAGCAGCUUAAUAGCUACUACGGAUCCUAGCAGCCGUCGCCUGGUCGGCUGA
UUUCUAGGGUCUCACUUUAAACAGGCUACGCUUGGACCCUUCCGUCUGGAGGGAAAGAGAAGAGAUGGAAUCAGACUGGU
CGGACGGACGCCUGUCAAUUGGCAGCCUGACGACGAGAUCCCAAUAAAUUGACUACACACGUAGAAGCUUAAGUAUACGA
UGCCUUCGGACGUGGGUUCGACUCCCACCGUCUCCAuac
>Ocebl_iheyi_0502 Oceanobacillus iheyensis tmRNA BA000028:2479403-2479040; NC_004193:2479403-2479040
GGGGACGUUACGGAUUCGACAGGGAUAGAUUGAGCUCAGGUUGCACGUCGAGGUUACGGCUCGUAAAACGUUAUGCCUAA
AUAUAACUGGCAAAGAAACUAAUCAACCUGUUUUAGCAGCUGCGUAAGUAGCCUAAAACGAUCCUUCCUGGCAUCGCCCG
UGUGGCAGAUUGAAGGGUCUCAAAUUAAGCGGGCUAUGCUACGAUCCUCCGCCUGGGGAUUUGUAGAUGAAUCUAAUCAG
GCUAGCUCCAUGAAAGCCUGUUGGUAGGCCAACAUGAGAGCGAAUGAUAAUAUACCAACUACGCGUGUAGAAGCCUGAGU
GGCGAUAUCCUUGGACGAGGGUUCGACUCCCUCCGUCUCCACCA
>Stapc_sapro_0503 Staphylococcus saprophyticus tmRNA (ends unsequenced) AF375585:1-311
GGUUCCAUGAGCUAGUUAAGCGUGUCGAAGGGUUGUCUUCGUCACCAACACACACAGUUAUAAUAACUGGCAAAGAAAAC
AAUAAUUUCGCAGUAGCUGCGUAAUAGCACUCUGCAUCGCCUAACGGUAUCUCCUAUGUACCGUUAACGCGAUUCAACCU
AUAGUAGGAUACGCUAGGCACUGCCGUUUGAAGUCUGCCUAGAAGAGAUUAAUCAAACUAGCAUAAUGACGGAUGUCUAU
CACCUCCCAUUAUGCGAAACCUAUUGAUAGACUACGCACGUAGAAGUGCUAGUAUCAGAACCUCUGGACGC
>Stapc_xylos_0504 Staphylococcus xylosus tmRNA (ends unsequenced) AF375587:1-311
GGUUCCAUGAGCUAGUUAAGCGUGUCGGAGGGUUGUCUUCGUCACCAACACACACAGUUAUAAUAACUGGCAAAGAAAAC
AAUAAUUUCGCAGUAGCUGCGUAAUAGCACUCUGCAUCGCCUAACGGUAUCUCCUAUGUACCGUUAACGCGAUUCAACCU
AUAGUAGGAUACGCUAGGCACUGCCGUUUGAAGUCUGCCUAGAAGAGAUUAAUCAAACUAGCAUAAUGACGGAUGUCUAU
CACCUCCCAUUAUGCGAAACCUAUUGAUAGACUACGCACGUAGAAGUGCUAGUAUCAGAACCUCUGGACGC
>Stapc_aure1_0505 Staphylococcus aureus pre-tmRNA, version 1 {COL, NCTC 8325, NCTC6571} CP000046:875955-876316; NC_002951:875955-876316; AC074317:11254-10893; AF440355:1-315; AR535622:4130-4491; AR354066:4130-4491; AR539648:330-31X; AR358092:330-31X; AR538685:117-1X; AR357129:117-1X; AR538678:127-1X; AR357122:127-1X; AR538557:222-1X; AR357001:222-1X
GGGGACGUUCAUGGAUUCGACAGGGGUCCCCCGAGCUCAUUAAGCGUGUCGGAGGGUUGUCUUCGUCAUCAACACACACA
GUUUAUAAUAACUGGCAAAUCAAACAAUAAUUUCGCAGUAGCUGCCUAAUCGCACUCUGCAUCGCCUAACAGCAUUUCCU
AUGUGCUGUUAACGCGAUUCAACCUUAAUAGGAUAUGCUAAACACUGCCGUUUGAAGUCUGUUUAGAAGAAACUUAAUCA
AACUAGCAUCAUGUUGGUUGUUUAUCACUUUUCAUGAUGCGAAACCUAUCGAUAAACUACACACGUAGAAAGAUGUGUAU
CAGGACCUUUGGACGCGGGUUCAAAUCCCGCCGUCUCCAuau
>Stapc_aure2_0506 Staphylococcus aureus pre-tmRNA, version 2 {MRSA252} BX571856:883681-884042; NC_002952:883681-884042
GGGGACGUUUCUGGAUUCGACAGGGGUCCCCCGAGCUCAUUAAGCGUGUCGGAGGGUUGUCUUCGUCAUCAACACACACA
GUUUAUAAUAACUGGCAAAUCAAACAAUAAUUUCGCAGUAGCUGCCUAAUCGCACUCUGCAUCGCCUAACAGCAUUUCCU
AUGUGCUGUUAACGCGAUUCAACCUUAAUAGGAUAUGCUAAACACUGCCGUUUGAAGUCUGUUUAGAAGAAACUUAAUCA
AGCUAGCAUCAUGUUGGUUGUUUAUCACUUUUCAUGAUGCGAAACUUUUCGAUAAACUACACACGUAGAAAGAUGUGUAU
CAGGACCUCUGGACGCGGGUUCAAAUCCCGCCGUCUCCAuau
>Stapc_aure3_0507 Staphylococcus aureus pre-tmRNA, version 3 {MSSA476} BX571857:837496-837857; NC_002953:837496-837857
GGGGACGUUCAUGGAUUCGACAGGGGUCCCCCGAGCUCAUUAAGCGUGUCGGAGGGUUGUCUUCGUCAUCAACACACACA
GUUUAUAAUAACUGGCAAAUCAAACAAUAAUUUCGCAGUAGCUGCCUAAUCGCACUCUGCAUCGCCUAACAGCAUUUCCU
AUAUGCUGUUAACGCGAUUCAACCUUAAUAGGAUAUGCUAAACACUGCCGUUUGAAGUCUGUUUAGAAGAAACUUAAUCA
AGCUAGCAUCAUGUUGGUUGUUUAUCACUUUUCAUGAUGCGAAACCUUUCGAUAAACUACACACGUAGAAAGAUGUGUAU
CAGGACCUCUGGACGCGGGUUCAAAUCCCGCCGUCUCCAuau
>Stapc_aure4_0508 Staphylococcus aureus pre-tmRNA, version 4 {Mu50} BA000017:867990-868351; NC_002758:867990-868351
GGGGACGUUCAUGGAUUCGACAGGGGUCCCCCGAGCUCAUUAAGCGUGUCGGAGGGUUGGCUUCGUCAUCAACACACACA
GUUUAUAAUAACUGGCAAAUCAAACAAUAAUUUCGCAGUAGCUGCCUAAUCGCACUCUGCAUCGCCUAACAGCAUUUCCU
AUGUGCUGUUAACGCGAUUCAACCUUAAUAGGAUAUGCUAAACACUGCCGUUUGAAGUCUGUUUAGAAGAAACUUAAUCA
AGCUAGCAUCAUGUUGGUUGUUUAUCACUUUUCAUGAUGCGAAACCUUUCGAUAAACUACACACGUAGAAAGAUGUGUAU
CAGGACCUCUGGACGCGGGUUCAAAUCCCGCCGUCUCCAuua
>Stapc_aure5_0509 Staphylococcus aureus pre-tmRNA, version 5 {MW2} BA000033:839013-839374; NC_003923:839013-839374
GGGGACGUUCAUGGAUUCGACAGGGGUCCCCCGAGCUCAUUAAGCGUGUCGGAGGGUUGUCUUCGUCAUCAACACACACA
GUUUAUAAUAACUGGCAAAUCAAACAAUAAUUUCGCAGUAGCUGCCUAAUCGCACUCUGCAUCGCCUAACAGCAUUUCCU
AUAUGCUGUUAACGCGAUUCAACCUUAAUAGGAUAUGCUAAACACUGCCGUUUGAAGUCUGUUUAGAAGAAACUUAAUCA
AGCUAGCAUCAUGUUGGUUGUUUAUCACUUUUCAUGAUGCGAAACCUUUCGAUAAACUACACACGUAGAAAGAUGUGUAU
CAGGACCUCUGGACGCGGGUUCAAAUCCCGCCGUCUCCAuua
>Stapc_aure6_0510 Staphylococcus aureus pre-tmRNA, version 6 {N315} BA000018:843797-844158; NC_002745:843797-844158
GGGGACGUUCAUGGAUUCGACAGGGGUCCCCCGAGCUCAUUAAGCGUGUCGGAGGGUUGGCUUCGUCAUCAACACACACA
GUUUAUAAUAACUGGCAAAUCAAACAAUAAUUUCGCAGUAGCUGCCUAAUCGCACUCUGCAUCGCCUAACAGCAUUUCCU
AUGUGCUGUUAACGCGAUUCAACCUUAAUAGGAUAUGCUAAACACUGCCGUUUGAAGUCUGUUUAGAAGAAACUUAAUCA
AGCUAGCAUCAUGUUGGUUGUUUAUCACUUUUCAUGAUGCGAAACCUUUCGAUAAACUACACACGUAGAAAGAUGUGUAU
CAGGACCUCUGGACGCGGGUUCAAAUCCCGCCGUCUCCAuau
>Stapc_epid1_0511 Staphylococcus epidermidis pre-tmRNA, version 1 {ATCC 14990}
GGGGACGUUCUUGGAUUCGACAGGGGUCCCCGAGCUUAUUAAGCGUGUCGGAGGGUUGGCUCCGUCAUCAACACAUUUCG
GUUAAAUAUAACUGACAAAUCAAACAAUAAUUUCGCAGUAGCUGCGUAAUAGCCACUGCAUCGCCUAACAGCAUCUCCUA
CGUGCUGUUAACGCCAUUCAACCCAAGUAGGAUAUGCUAAACACUGCCGCUUGAAGUCUGUUUAGAUGAAAUAUAAUCAA
GCUAGUAUCAUGUUGGUUGUUUAUUGCUUAGCAUGAUGCGAAAAUUAUCAAUAAACUACACACGUAGAAAGAUUUGUAUC
AGGACCUCUGGACGCGGGUUCGAAUCCCGCCGUCUCCAuua
>Stapc_epid2_0512 Staphylococcus epidermidis pre-tmRNA, version 2 {SR1, RP62A} AF269873:1626-1987; AF269456:1525-1164; AF270023:272-1; AF269545:2943-3111; CP000029:457703-458064; NC_002976:457703-458064; AX144776:1525-1164; AX144865:2943-3111; AX145191:1626-1987; AX145341:272-1; AR485412:1525-1164; AR485501:2943-3111; AR485827:1626-1987; AR485977:272-1; AX048670:1-313; AX048669:1-313; AX048611:1-313; AX048610:1-313
GGGGACGUUCUUGGAUUCGACAGGGGUCCCCCGAGCUUAUUAAGCGUGUCGGAGGGUUGGCUCCGUCAUCAACACAUUUC
GGUUAAAUAUAACUGACAAAUCAAACAAUAAUUUCGCAGUAGCUGCGUAAUAGCCACUGCAUCGCCUAACAGCAUCUCCU
ACGUGCUGUUAACGCGAUUCAACCCUAGUAGGAUAUGCUAAACACUGCCGCUUGAAGUCUGUUUAGAUGAAAUAUAAUCA
AGCUAGUAUCAUGUUGGUUGUUUAUUGCUUAGCAUGAUGCGAAAAUUAUCAAUAAACUACACACGUAGAAAGAUUUGUAU
CAGGACCUCUGGACGCGGGUUCGAAUCCCGCCGUCUCCAuua
>Stapc_epid3_0513 Staphylococcus epidermidis pre-tmRNA, version 3 (ends unsequenced) {DSM20044, ATCC 12228} AF375586:1-311; AE015929:564585-564945; NC_004461:564585-564945
GGGGACGUUCUUGGAUUCGACAGGGGUCCCCGAGCUUAUUAAGCGUGUCGGAGGGUUGGCUCCGUCAUCAACACAUUUCG
GUUAAAUAUAACUGACAAAUCAAACAAUAAUUUCGCAGUAGCUGCGUAAUAGCCACUGCAUCGCCUAACAGCAUCUCCUA
CGUGCUGUUAACGCGAUUCAACCCUAGUAGGAUAUGCUAAACACUGCCGCUUGAAGUCUGUUUAGAUGAAAUAUAAUCAA
GCUAGUAUCAUGUUGGUUGUUUAUUGCUUAGCAUGAUGCGAAAAUUAUCAAUAAACUACACACGUAGAAAGAUUUGUAUC
AGGACCUCUGGACGCGGGUUCGAAUCCCGCCGUCUCCAuua
>Lista_mono1_0514 Listeria monocytogenes pre-tmRNA, version 1 {ATCC 15313, 4b F2365, 4b H7858, 1/2a F6854} AF375584:1-321; AE017262:2463864-2463495; NC_002973:2463864-2463495; AADR01000042:4166-3797; NZ_AADR01000042:4166-3797; AADQ01000035:13943-14312; NZ_AADQ01000035:13943-14312; AX416690:1696-1327; AX414894:810-441
GGGGAUGUUACGGAUUCGACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAG
CCAAUAAUAACUGGCAAAGAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUC
GCCCAUGUGCUACGGUAAGGGUCUCACUCUAAGUGGGCUACACUAGUUAAUCUCCGUCUGGGGUUAAAUAGAAGAGCUUA
AUCAGACUAGCUGAAUGGAAGCCUGUUACCGGGCCGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAU
UUAAGUGCCGAUAUUUCUGGACGUGGGUUCGACUCCCACCAUCUCCAuau
>Lista_mono2_0515 Listeria monocytogenes pre-tmRNA, version 2 {EGD-e} AL591983:115220-114851; AX641672:110220-109851; NC_003210:2510220-2509851
GGGGAUGUUACGGAUUCGACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAG
CCAAUAAUAACUGGCAAAGAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUC
GCCCAUGUGCUACGGUAAGGGUCUCACUCUAAGUGGGCUACACUAGUUAAUCUCCGUCUGGGGUUAAAUAGAAGAGCUUA
AUCAGACUAGCUGAAUGGAAGCCUGUUACUGGGCCGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAU
UUAAGUGCCGAUAUUUCUGGACGUGGGUUCGACUCCCACCAUCUCCAuau
>Lista_mono3_0516 Listeria monocytogenes tmRNA, version 3 (ends unsequenced) {clinical 1, clinical 2, NCTC 10888, NCTC 11994, NCTC 5348, NCTC 7973} AF440347:1-322; AF440348:1-322; AF440346:1-322; AF440345:1-322; AX048513:1-247; AX048512:1-247; AF440344:1-322; AF440343:1-322; AX048511:1-322; AX048510:1-322
ACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAGCCAAUAAUAACUGGCAAA
GAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUCGCCCAUGUGCUACGGUAA
GGGUCUCACUCUAAGUGGGCUACACUAGUUAAUCUCCGUCUGGGGUUAAAUAGAAGAGCUUAAUCAGACUAGCUGAAUGG
AAGCCUGUUACCGGGCCGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAUUUAAGUGCCGAUAUUUCU
GG
>Lista_inno1_0517 Listeria innocua tmRNA, version 1 (ends unsequenced) {CLIP8811} AF375583:1-321
GAUAGUUCGAGCUUGAUUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAGCCAAUAAUAACUGGCAAAGAAAA
ACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUCGCCCAUGUGCUACGGUAAGGGUC
UCACUCUAAGUGGGCUACACUAGUUAAUCUCCGUCUGAGGUUAAAUAGAAGAGCUUAAUCAGACUAGCUGAAUGGAAGCC
UGUUACCGGGCUGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAUUCAAGUGCCGAUAUUUCUGGACG
U
>Lista_inno2_0518 Listeria innocua pre-tmRNA, version 2 {Clip11262, food 1, food 2, food 3, NCTC 11288, NCTC 12210} AL596172:194406-194037; AX417048:156406-156037; AX413018:118823-118454; NC_003212:2556406-2556037; AF440338:1-322; AX048596:1-232X; AX048597:1-232X; AF440340:1-322; AX048598:1-229X; AX048599:1-229X; AF440339:1-322; AX048600:1-229X; AX048601:1-229X; AF440341:1-322; AF440337:1-322; AX048509:1-322; AX048508:1-322
GGGGAUGUUACGGAUUCGACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAG
CCAAUAAUAACUGGCAAAGAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUC
GCCCAUGUGCUACGGUAAGGGUCUCACUCUAAGUGGGCUACACUAGUUAAUCUCCGUCUGAGGUUAAAUAGAAGAGCUUA
AUCAGACUAGCUGAAUGGAAGCCUGUUACCGGGCUGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAU
UCAAGUGCCGAUAUUUCUGGACGUGGGUUCGACUCCCACCAUCUCCAuau
>Lista_inno3_0672 Listeria innocua pre-tmRNA, version 3 (ends unsequenced) {ATCC 12210} AX048603:1-232; AX048602:1-232
GGGGAUGUUACGGAUUCGACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAG
CCAAUAAUAACUGGCAAAGAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUC
GCCCAUGUGCUACGGUAAGGGUCUCACUCUAAGUGGGCUACACUAGUUAAUCUCCGUCUGGGGUUAAAUAGAAGAGCUUA
AUCAGACUAGCUGAAUGGAAGCCUGUUACUGGGCCGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAU
UUAAGUGCCGAUAUUUCUGGACGUGGGUUCGACUCCCACCAUCUCCAuau
>Lista_welsh_0519 Listeria welshimeri tmRNA (ends unsequenced) AF440351:1-322; AX048517:1-322; AX048516:1-322
ACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAGCCAAUAAUAACUGGCAAA
GAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUCGCCCAUGUGCUACGGUAA
GGGUCUCACUCUAAGUGGGCUACACUGGCUAAUCUCCGUCUGAGGUUAGUUGGAAGAGCUUAAUCAGACUAGCUGAAUGG
AAGCCUGUUACCGGGCCGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAUUUAAGUGCCGAUAUUUCU
GG
>Lista_seeli_0520 Listeria seeligeri tmRNA (ends unsequenced) AF440350:1-322; AX048636:1-322; AX048635:1-322; AX048607:1-322; AX048606:1-322
ACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAGCCAAUAAUAACUGGCAAA
GAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUCGCCCAUGUGCUACGGAAA
GGGUCUCACUUUAAGUGGGCUACACUAAAUAAUCUCCGUCUGGGGUUAGUUAGAAGAGCUUAAUCAGACUAGCUGAAUGG
AAGCCUGUUACCGGGCUGAUGUUUAUGCGAAAUACUAAUACGGUGACUACGCUCGUAGAUAUUUAAGUGCCCAUAUUUCU
GG
>Lista_gray1_0521 Listeria grayi tmRNA, version 1 (ends unsequenced) {NCTC 10812} AF440349:1-322; AX048515:1-322; AX048514:1-322
ACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUCAACGUCAAAGCCAAUAAUAACUGGCAAA
GAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUCGCCCAUGUGCUACGGUAA
GGGUCUCACUCUAAGUGGGCUACACUAGUUAAUCUCCGUCUGAGGUUAAAUAGAAGAGCUUAAUGAGACUAGCUGAAUGG
AAGCCUGUUACCGGGCUGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAUUCAAGUGCCGAUAUUUCU
GG
>Lista_gray2_0522 Listeria grayi tmRNA, version 2 (ends unsequenced) {NCTC 10815} AF440336:1-322; AX048507:1-322; AX048506:1-322
ACAGGGAUAGGUCGAGCUUGAGUUGCGAGCCGGGGGGAUCGGCCCGUCAUCAACGUCAAAGCCAAUAAUAACUGGCAAAC
AAAACAACAAUUUAGCUUUCGCUGCCUAAUAGCAGUCUGAAUAGCUGAUCCUCCGUGCAUCACCCAUGUGCUACGGUAAG
GGUCUCACUUUUAAGUGGGUUACGCUGGCUUAUCUCCGUCUGGGGCAAACGAGAAGAGCAUAAUCAGACUAGCUAGAUAG
AGCCCUGACGCCGGGCAGACAUCUAUGCGAAAUCCAAAUACGGCAACUACGCUCGUAGAUGCUCAAGUGCCGAUAUUUCU
GG
>Lista_ivano_0523 Listeria ivanovii tmRNA (ends unsequenced) AF440342:1-322; AX048637:1-322; AX048604:1-322; AX048638:1-321X; AX048605:1-321X
ACAGGGAUAGUUCGAGCUUGAGUUGCGAGUCGGGGGGAUCGUCCUCGUUAUUAACGUCAAAGCCAAUAAUAACUGGCAAA
GAAAAACAAAACCUAGCUUUCGCUGCCUAAUAAGCAGUAGCAUAGCUGAUCCUCCGUGCAUCGCCCAUGUGCUACGGUAA
GGGUCUCACUUUAAGUGGGCUACACUAAAUAAUCUCCGUCUGGGGUUAGUUAGAAGAGCUUAAUCAGACUAGCUGAAUGG
AAGCCUGUUACCGGGCUGAUGUUUAUGCGAAAUGCUAAUACGGUGACUACGCUCGUAGAUAUUUAAGUGCCGAUAUUUCU
GG
>Lacbl_gasse_0524 Lactobacillus gasseri pre-tmRNA AAAO02000004:24961-25326; NZ_AAAO02000004:24961-25326
GGGGAUGUUUUGGGAUUCGACAGGCGUAGAUUCGCGUUGACUGCGAUUCGUAGGUCACGUCUACGUUAAAACGUCACAGU
UAAAUUAUAACUGCAAAUAACGAAAAUUCUUACGCAGUAGCUGCUUAGUCAGGCUGCGUGAUCCAAUGACGGAUUGCUCG
UGUCUGUCUGCGGGUCUUACCAUUUAACGAGCUACGUUUAACUACUUACCUUAAUAGUUAGAAAUAAGAUUCUUAGGUUA
GUUUUGAUAGUUUAGCCCUGUUAUAUGGCGUUUUAUCAAAGCGAAGUUUAAGUAAUAUAACUAUGAUCGUAGAGGUUAAC
GACGGAAUACGUUUGGACAGGGGUUCAAUUCCCCUCAUCUCCAuaa
>Lacbl_johns_0525 Lactobacillus johnsonii pre-tmRNA AE017198:812877-813243; AX926714:111106-111472; NC_005362:812877-813243
GGGGAUGUUUUGGGAUUCGACAGGCGUAGAUUCGCGUUGACUGCGAUUCGUAGGUCACGUCUACGUUAAAAACGUCACAG
UUAAAUUAUAACUGCAAAUAACGAAAAUUCUUACGCAGUAGCUGCUUAGUCAGCCUGCGUGAUCCAAAGAUGGAUUGCUC
GUGUCUAUCUACGGGUCUUACCAUUUAACGAGCUACGUUUAACUACUUACCUUAAUAGUUAGAAAUAAGAUUCUUAGGUU
AGUUUUGAUAGUUUAGCCCUGUUAUAUGGCGUUUUAUCAAAGCGAAUUUUAAGUAAUAUAACUAUGAUCGUAGAUGUUAA
CGACGAAAUACGUUUGGACAGGGGUUCAAUUCCCCUCAUCUCCAuag
>Lacbl_sakei_0526 Lactobacillus sakei pre-tmRNA AF400065:3312-3681; CR936503:1274331-1273962; NC_007576:1274331-1273962
GGGGCCGUUACGGAUUCGACAUGUGUAGGUGAGCGUGAAUUGCACUUCGUAGGUUACGUCUGCGUUAACAACGUUACAGU
UAAUUAUAACUGCAAACAAUAACAAUUCUUACGCUGUAGCUGCCUAAACACCAGCAUAGCGUGAUCCGUCUGACUUCACC
CAAGGGUUAGAUCCGGGUCUCAAAUUAAUUGGGUUACGUUAAAUGCCGCCGUUUGAAGUGUUUAAAAGAGAUUUUCAAGC
UAGUUAGUCCAUCCGAGCCUCUGUUGAACGGCGUUUUGGGCUAGCGAAUUUCUAAAUAGUUCGACUAUGAGUGUAGAGAU
UGACGUGGCAAUGCGCAUGGACGCGGGUUCAACCCCCGCCGGCUCCAuug
>Lacbl_delb1_0527 Lactobacillus delbrueckii tmRNA, version 1 (ends unsequenced) {NCTC 662} AF440335:1-316; AX048503:1-316; AX048502:1-316
AAGCACAGUUCGAGCUUGAAUUGCGUUUCGUAGGUUACGUCUACGUUAAAACGUUACAGUUAAAUAUAACUGCUAAAAAC
GAAAACAACUCUUACGCUUUAGCUGCCUAAAAACAGUUAGCGUAGAUCCUCUCGGCAUCGCCCAUGUGCUCGAGUAAGGG
UCUCAAAUUUAGUGGGAUACGUUAAACUUUUCCGUCUGUAAAGUUUAAAAGAGAUCAUCAGACUAGCGAUACAGAAUGCC
UGUCACUCGGCAAGCUGUAAAGCGAAACCUCAAAUGAGUUGACUAUGAACGUAGAUUUUUAAGUGUCGAUGUGUUU
>Lacbl_delb2_0528 Lactobacillus delbrueckii pre-tmRNA, version 2 {ATCC BAA-365} AAGQ01000065:5956-5595; NZ_AAGQ01000065:5956-5595
GGGGAUGUUUUGGGAUUCGACAGGCGCAGACCCGCGCUGGUUGCGAUUCGUAGGUUACGUCUACGUUAAAACGUUAAACA
GUUUAAAUUAACUGCAAACGAAAACUCAUACGCUGUAGCUGCUUAGUUCAGCCCAGCUGCCAAUAGACUGCCUGCCCGUG
GCGGUCUUGCGGUAUCAACAUUACGGGAUACGCUUGCCUAUCACACCUGAAUAAGCGAGAAGAGACUAACAGGUUAGCCG
UGGCUGUUUGGCCCUGUCAUAUGGCGUUUUGCCCCGGUGAAGUUUAAAUAAUAUGACUAUGAUCGUAGAGAUUAGUGACG
GGAUGCGUUUGGACAGGGGUUCAAUUCCCCUCAUCUCCAucu
>Lacbl_casei_0529 Lactobacillus casei pre-tmRNA AAGR01000008:30036-30399; NZ_AAGR01000008:30036-30399
GGGGGUGUAAUGGUCUCGACAUUGCUUUUCGCACAUGCAGUGCACCUCGGAGGCUCGGCUCCGUCAUCAACGGAACAGUU
AAUAUAACUGCAAAGAACGAAAAUUCUUACGCUUUAGCUGCUUAAUAACCAGCUAGCGUGAUCCUUCCGACUUCGCUCAA
GGGUCGGGUCUGGGUCUCAAAUUAUUGAGCUACGGUUAAUGUUGCCACCUGAGGCAUUAACAAGAGACUAGUAGGUUAGC
UGCGUUGUGUUAGCCUUGCUGGCUGGCGCGACAUCGCGGCGAAUUUUAAAUAAGUCAGCUAUAGGUGUAGAGCUGCAUGU
AGCAGGGGUGAUGGACAGGAGUUCGAUUCUCCUCACCUCCAuua
>Lactb_aciph_0610 Lactobacillus acidophilus pre-tmRNA CP000033:728515-728883; NC_006814:728515-728883
GGGGAUGUUUUGGGAUUCGACAGGCGUAGACCCGCAUUGACUGCGAUUCGUAGGUUACGUCUACGUAAAAACGUUACAGU
UAAAUAUAACUGCAAAUAACAAAAAUUCUUACGCAUUAGCUGCUUAAUUUAGCGCAUGCGUUGCUCUUGACCAGUUUACU
CGUGACUGGUUUUCGAGUAUCAACUUUAGCGAGUUACGUUUAACUACCUCACCUGAAUAGUUAAAAAGAGUCUUAACAGG
UUAGCUGGUUCAUACUAGCCCUGUUAUAUGGCGUUUUGAACUAGUGAAGUUUAAGUAAUAUAACUAUGAUCGUAGAGGUU
AAUGACGAGAUGCGUUUGGACAGGGGUUCAAUUCCCCUCAUCUCCAuag
>Lacbl_helve_0530 Lactobacillus helveticus tmRNA (ends unsequenced) AF375575:1-318
CGUAGAUUCGCAUUGACUGCGAUUCGUAGGUUACGUCUACGUAAAAACGUUACAGUUAAAUAUAACUGCAAAUAACAAAA
AUUCUUACGCAUUAGCUGCUUAAUUUAGCGCAUGCGUUGCUCUUUGUCGGUUUACUCGUGGCUGACACUGAGUAUCAACU
UUAGCGAGUUACGUUUAACUAUCUCACCUGAAUAGUUGAAAAGAGUCUUAACAGGUUAGCUAGCUCAUCCUAGCCCUGUU
AUAUGGCGUUUUGAGCUAGUGAAGUUCAAGUAAUAUAACUAUGAUCGUAGAGGUCAGUGACGGAAUGCGUCUGGACAG
>Lacbl_galli_0531 Lactobacillus gallinarum tmRNA (ends unsequenced) AF375577:1-318
CGUAGAUUCGCAUUGANUGCGAUUCGUAGGUUACGUCUACGUAAAAACGUUACAGUUAAAUAUAACUGCAAAUAACAAAA
AUUCUUACGCAUUAGCUGCUUAAUUUAGCGCAUGCGUUGCUCUUUGUCGGUUUACUCGUGGCUGACACUGAGUAUCAACU
UUAACGAGUUACGUUUAACUACCUCACCUGAAUAGUUGAAAAGAGUCUUAACAGGUUAGCUAGCUCAUCCUAGCCCUGUU
AUAUGGCGUUUUGGGCUAGUGAAGUUCAAGUAAUAUAACUAUGAUCGUAGAGUUCAGUGACGGAAUGCGUUUGGACAC
>Lacbl_plan1_0532 Lactobacillus plantarum tmRNA, version 1 (ends unsequenced) {CNRZ211} AF375576:1-322
UAUAGUUUGAGUUCGAUUGCGCUUCGUAUGUUGCGUCUACGUAAAAACGCUCAGUUUAAAUUAUAACUGCAAAAAAUAAU
AACAAUUCUUACGCUUUAGCUGCCUAAUAAGCGCUUAACGUAGAUCCUCCCAGGAUCGUCCAUGUUCUGGAUCUGGGUCC
UAAAUUUAGUGGACUUACGCUCAAAGCUUCCACCUGGAGUUGCGAGAAGAGACUAAUCAGGUUAGUCAUUGCUGGGUGCC
CUGUCAUACGGCGUUUGCAAUGAUGAAAUUUAAAUAGUAUGAAUAUGAGCGUAGAUAUCCGAGGGGCAAUAUGCUUAGAC
GC
>Lacbl_plan2_0533 Lactobacillus plantarum pre-tmRNA, version 2 {WCFS1} AL935259:89188-89559; NC_004567:2243188-2243559
GGGGAUGUUCUGGAUUCGACAGGUAUAGUUUGAGUUCGGAUUGCGCUUCGUAGGUUGUGUCUACGUAAAAACGCUCAGUU
UAAAUUAUAACUGCAAAAAAUAAUAACAAUUCUUACGCUUUAGCUGCCUAAUAAGCGCUUAACGUAGAUCCUCCCAGGAU
CGUCCAUGUUCUGGAUCUGGGUCCUAAAUUUAGUGGACUUACGCUCAAAGCUUCCACCUGGAGUUGCGAGAAGAGACUAA
UCAGGUUAGUCAUUGCUGGGUGCCCUGUCAUACGGCGUUUGCAAUGAUGAAAUUUAAAUAGUAUGAAUAUGAGCGUAGAU
AUCCGAGGGGCAAUAUGCUUGGACGCGAGUUCGACUCUCGCCAUCUCCAuua
>Lacbl_brevi_0534 Lactobacillus brevis pre-tmRNA
GGGGCCGUUCUGGAUUCGACUGGUAUAGGUUGCGCCCCAACUGCACUCCGUAGCGGCAUCUACGUUAAAAGGUCCAGUUU
AAUUAUAACUGCAAAAAAUAAUAACAAUUCUUACGCUUUAGCUGCUUAAUAGGCGCUUAACGUAGAUCCUCCUAGGCUUG
UCCGUGGUCUAGAUCUGGGUCCUAAAUUUAACGGACUUACGCUAACGACUCCCACCUGAAGUACGUUAGAAGAGAAAAAU
CAGGUUAGCUGUUCAUGUGGGCCCUGACAGGCGGCAAGUUGGGCAGUGAAACCUUAAGUAGUCUGAAUAUGAGUGUAGAC
GUUGGGGUGGCAAUAUGCUAGGACGCGGGUUCGAUCCCCGCCGGCUCCAuau
>Pedio_pento_0535 Pediococcus pentosaceus pre-tmRNA AAEV01000019:18935-19303; NZ_AAEV01000019:18935-19303
GGGGUCGUUAUGGAUUCGACAGGUAUGGGUCGAGCCAUGACUGCAUUUCGUAGGUUACGGCUACGUAAAAACGUUCAGUU
UAUUAUAACUGCAAAAAAUAAUAACAAUUCUUACGCUUUAGCUGCCUAAUAGUAGCUUGACGUAGAUCCGCCUAGUCUCG
UCCAUGGGCUAGAUACGGGUCCUAAAUGAAGUGGACUUGCGCUUAAGUACUGGCCUGGGUGCUUAAGAAGAGGAUUUACA
GACUAGCGUUUUAAUGAAGCCCCGACAUACGGCGUCUUAUUUCGCGAAAUUUAAGUAGUAUGAAUAUGAAUGUAGAUGUC
AUGGUGGCGACAUGCUUGGACGCGGGUUCGACUCCCGCCGACUCCAuuu
>Leuno_mesen_0536 Leuconostoc mesenteroides pre-tmRNA AF375573:1-307; AF375572:1-307; AF375574:1-307; AF375571:1-307; AABH02000025:3403-3760; NZ_AABH02000025:3403-3760
GGGUCUGUUUUUGGAAUUCGACAGGUCGUUUAGAGCAUUGAUUGCGUUUCGCCAUCCGGGCGCAAAACGGGCAGAAAUUU
UAACUGCAAAAAACGAAAACUCUUUCGCUAUCGCUGCCUAAAAACCAGUGAUGCGUAGCUUAAUCUUGGUUGCUGGCGUC
UGAGGUUAGGCCAUAAAAGGCCAGAUCGUACUGCUUCUUACAUCUGGAAAAGCAGUAUUAAAUCAAUCAGGUUAGUUAUA
UUGAAGAGCCUUGAGCUAUGGCAGACAAUAUAAUGAACUACAAAUAAUAGCCCUAUAAACGUAGAUAUUGGUGUAUCGGG
CGAUUUGGACAGGGGUUCGACUCCCCUCAGAUCCAuuu
>Leuno_lacti_0537 Leuconostoc lactis tmRNA (ends unsequenced) AF375569:1-307
CUGUUUAGGGCAUGGACUGCGUUUCGCCAUCCGGGCGUUAAAACGGGCAGAAAUUUUAACUGCAAAAAACGAAAACUCUU
UCGCAAUCGCUGCCUAAAAAACAGUGAUGCGUCACUUAAUCUUGGUAGCUGGCGUCUAAGGUUAGGUCAUAAAAAGUCAG
AUCGCGUCGUUGCUUAGAUUCGGAACAGCGGCGUUAAAUGAAUCGAGUUAGUGAUUGAUGUUAGCCUCGUGUUGUGGCGG
AAUCAAUCAUGAAACUUAAAUGACAACACUAUAAGCGUAGAGGUUCAUGUACCGGGCAGUUUGGACA
>Leuno_pseud_0538 Leuconostoc pseudomesenteroides tmRNA (ends unsequenced) AF375570:1-307
UCGUUUAGAGCAUUGCCUGCGUUUCGCCGUCCGGGCGUUAAACGGGCAGACAUUUUAACUGCAAAAAACGAAAACUCUUA
CGCAAUCGCUGCUUAAAAACCAGCAAUACGUAGCUUAAUCUUGGUUUCUGACGUCUGAGAUUAGGCCAUAAAAGGUCAGA
UCGCAUUGUUGUUUACAUCUGGAAUGGCAAUGUUAAAUUUAUCAGAUUAGUUAAUUUGAUUAGCCGUGUGUUAUGGCGUA
CAAAUUGAUGAAAUUCAAAUGAUAGCACUAUAAGCGUAGGCGCCAAUGUAUCGGACGGUUUGGACAG
>Oenoco_oeni_0539 Oenococcus oeni pre-tmRNA AABJ03000014:16192-16541; NZ_AABJ03000014:16192-16541; AJ629111:506-157
GGGGUAGUUCCGGAAUUCGACAGGUUAUUACAAGCAUGGAUUGCGUUCCCGUUUGUCGGGUUAAAGACUGCAGAUAUAAC
UGCAAAAAAUAAUGAACCAUCUUACGCAUUAGCUGCCUAAUCGCAGUAGCGUAGCCCUUUGUUGAGUCCACGGCAACAUU
CUCGGCCUAAUUAGUGGAUUAGCUGCUGGCAUUUAUGUUCGGAAUAAAAGCAGUGAAACAAGAAUCGAACUAGCUCUCGA
UUUGGAAGUUAGCAACCUAAUCUUGAGCGAAAUUACUUGUUAACUAUGAGCGUAGAUAUUUAUGUGAUUGGAUAAUUUGG
ACAUGGGUUCGACUCCCAUCUACUCCAuau
>Carnb_mltar_0540 Carnobacterium maltaromaticum pseudo-tmRNA (defective, missing 5-prime end) AF275938:500-865
uagcacaauauguuacauuauuuaugugagcaaguucgauaaaaguucgucucccuaaagugauauaaaacacuugaagc
uaucuaaauauucauaaguuuaaaaagcuauuauaacuuuuucuucugaaaaauaaucaaaggaaauuuuuaCGGCAUCG
CCCAUGUGCUCGGGUAAGGGUCCUAUAAUAAGUGGGAUACGCUAAAUUUUUCCGUCUGUAAAGUUUAGAAGAGAUUAUCA
GACUAGCGAUGCAUGAUGCCUGUUAGGCGGCUAAUGUUCAGCGAAACCUUAAUAGCAUGACUAUGAACGUAGAUGUCUAA
GUGCCGAUAUGCUUGGACAGGGGUUCGACUCCCCUCGUCUCCAuau
>Entco_duran_0541 Enterococcus durans tmRNA (ends unsequenced) AF375582:1-319
CACAGUUCGAGCUUGAAUUGCGUUUCGUAGGUUACGUCUACGUUAAAACGUUACAGUUAAAUAUAACUGCUAAAAACGAA
AACAACUCUUACGCUUUAGCUGCCUAAAAACAGUUAGCGUAGAUCCUCUCGGCAUCGCCCAUGUGCUCGAGUAAGGGUCU
CAAAUUUAGUGGGAUACGUUAAACUUUUCCGUCUGUAAAGUUUAAAAGAGAUCAUCAGACUAGCAAUACAGAAUGCCUGU
CACUCGGCAAGCUGUAAAGCGAAACCUCAAAUGAGUUGACUAUGAACGUAGAUUUUUAAGUGUCGAUGUGUUUGGACGC
>Entco_faecm_0542 Enterococcus faecium pre-tmRNA AAAK03000041:17554-17920; NZ_AAAK03000041:17554-17920; AF375581:1-318
GGGGACGUUACGGAUUCGACAGGCACAGUCGAGCUUGAAUUGCGUUUCGUAGGUUACGUCUACGUAAAAACGUUACAGUU
AAAUAUAACUGCUAAAAACGAAAACAACUCUUACGCUUUAGCUGCCUAAAAACAGUUAGCGUAGAUCCUCUCGGCAUCGC
CCAUGUGCUCGAGUAAGGGUCCUAACUUUAGUGGGAUACGUUUCAACUUUCCGUCUGUAAGUUGAAAAAGAGAACAUCAG
ACUAGCGAUACAGAAUGCCUGUCACUCGGCAAGCUGUAAAGUGAAUCCUUAAAUGAGUUGACUAUGAACGUAGAUUUUUA
AGUGGCGAUGUGUUUGGACGCGGGUUCGACUCCCGCCGUCUCCAuug
>Entco_faes1_0543 Enterococcus faecalis pre-tmRNA, version 1 {V583} AE016830:1067257-1066891; NC_004668:1067257-1066891; AF440333:1-315; BD193796:2196-2562; AR394421:255-123; AR394420:82-210
GGGGGCGUUACGGAUUCGACAGGCAUAGUUGAGCUUGAAUUGCGUUUCGUAGGUUACGGCUACGUUAAAACGUUACAGUU
AAAUAUAACUGCUAAAAACGAAAACAAUUCUUUCGCUUUAGCUGCCUAAAAACCAGCUAGCGAAGAUCCUCCCGGCAUCG
CCCAUGUGCUCGGGUCAGGGUCCUAAUCGAAGUGGGAUACGCUAAAUUUUUCCGUCUGUAAAAUUUAGAGGAGCUUACCA
GACUAGCAAUACAGAAUGCCUGUCACUCGGCACGCUGUAAAGCGAACCUUUAAAUGAGUGUCUAUGAACGUAGAGAUUUA
AGUGGCAAUAUGUUUGGACGCGGGUUCGACUCCCGCCGUCUCCAuuu
>Entco_faes2_0544 Enterococcus faecalis tmRNA, version 2 (ends unsequenced) {CNRZ1666} AF375580:1-318
CAUAGUUGAGCUUGAAUUGCGUUUCGUAGGUUACGGCUACGUUAAAACGUUACAGUUAAAUAUAACUGCUAAAAACGAAA
ACAAUUCUUUCGCUUUAGCUGCCUAAAAACCAGCUAGCGAAGAUCCUCCCGGCAUCGCCCAUGUGCUCGGGUCAGGGUCC
UAAUCGAAGUGGGAUACGCUAAAUUUUUCCGUCUGUAAAAUUUAGAAGAGCUUACCAGACUAGCAAUACAGAAUGCCUGU
CACUCGGCACGCUGUAAAGCGAACCUUUAAAUGAGUGUCUAUGAACGUAGAGAUUUAAGUGGCAAUAUGUUUGGACGC
>Strpco_equi_0545 Streptococcus equi pre-tmRNA AY137526:43-1
GGGGUUGUUACGGAUUCGACAGGCAUUAUGAGGCCUAUUUUGCAACUCAUCGGCAGAUGUAAAAAUGCCAGUUAAAUAUA
ACUGCAAAAAAUAACACAACUUACGCUUUAGCUGCCUAAAAACCAGCCGGCGUGACUUCUAUAGGAUUGCUUGUGUCUUA
UUAGAGGUCUCAAAACAGCAAGCUACGUUUAGGUGAUUGUCUAGUCACCUAAAAAGAGAACCCUAGACUCGCAGGCUGAU
GGCUUGAGUUAUGUGUCCUUGGUCUGUUAAAGUAAGACAUAACCUAUGGUUGUAGACAAAUAGGUUAGCAGGUGUUUGGA
CGUGGGUUCGACUCCCACCAGCUCCAuca
>Strpc_zooep_0546 Streptococcus zooepidemicus pre-tmRNA
GGGGUUGUUACGGAUUCGACAGGCAUUAUGAGGCCUAUUUUGCAACUCAUCGGCAGAUGUAAAAAUGCCAGUUAAAUAUA
ACUGCAAAAAAUAACACAACUUACGCUUUAGCUGCCUAAAAACCAGCCGGCGUGACUUCUAUAGGAUUGUUUGUGUCUUA
UUAGAGGUCUCAAAACAGCAAGCUACGUUUAGGUGAUUGUCUAGUCACCUAAAAAGAGAACCCUAGACUCGCAGGCUGAU
GGCUUGAGUUAUGUGUCCUUGGUCUGUUAAAGUAAGACAUAACCUAUGGUUGUAGACAAAUAGGUUAGCAGGUGUUUGGA
CGUGGGUUCGACUCCCACCAGCUCCAuca
>Strpc_suis1_0547 Streptococcus suis pre-tmRNA, version 1 {P1/7}
GGGGUUGUUACGGAUUCGACAGGCAUUAUGAGGCUUGUUCUGCAACUCAUCGGCAGAUGUAAAAAUGCCAGUUAAAUAUA
ACUGCAAAAAAUACAAACACUUACGCAUUAGCAGCUUAAUAACCUGCCUGCGUGACCAGUCGCGAAUUGCUUGUGUUUGC
UGAUUGGUCUUAAAAUAGCAAGCUACGUUGGGAUUGAGUCAGGCAGUUCCAAAAGAGAUUUACUGACUCGCUUGGUCUAG
GUUUGAGUUAUGUAUCGAGUUCAAGUUAAAGUUAAAGCAAGACAUAACCUAUGGUUGUAGACGAAUAAGUUAGCAGGUGU
UUGGACGUGGGUUCGACUCCCACCAGCUCCAuau
>Strpc_suis2_0548 Streptococcus suis pre-tmRNA, version 2 {89/1591} AAFA02000032:7953-7606; NZ_AAFA02000032:7953-7606
GGGGUUGUUACGGAUUCGACAGGCAUUAUGAGGCUUGUUCUGCAACUCAUCGGCAGAUGUAAAAAUGCCAGUUAAAUAUA
ACUGCAAAAAAUACAAACACUUACGCAUUAGCAGCUUAAUAACCUGCCUGCGUGACCAGUCGCGAAUUGCUUGUGUUUGC
UGAUUGGUCUUAAAAUAGCAAGCUACGUUGGGAUUGAGUCAGGCAGUUCCAAAAGAGAUUUACUGACUCGCUUGGUCUAG
GUUUGAGUUAUGUAUCGAGUUCAAGUUAAAGCAAGACAUAACCUAUGGUUGUAGACGAAUAAGUUAGCAGGUGUUUGGAC
GUGGGUUCGACUCCCACCAGCUCCAuau
>Strpc_uberi_0549 Streptococcus uberis pre-tmRNA
GGGGUUGUUACGGAUUCGACAGGCACUAUGAGGCAUGUUUUGCAACUCAUCGGCAGAUGUAAAAAUGCCAGUUAAAUAUA
ACUGCAAAAAAUACAAACUCUUACGCUUUAGCUGCCUAAAAACCAGCUAGCGUGACUUCUUCAAGAUUGCUUGUGUCCUG
AUAGAAGUCUCAAAAACAGCAAGCUACGACUAAAGCCUUGUCUAGAGCCUUAGUAAGAGAUUUAUAGACUCGCUAAGUAA
UGGCUUGAGUUAUGUGUCCUUACUUAGUCAAAACAAGACAUAACCUAUGGUUGUAGACAAAUAUGUUGGCAGGUGUUUGG
ACGUGGGUUCGACUCCCACCAGCUCCAuua
>Strpc_pyog1_0550 Streptococcus pyogenes pre-tmRNA, version 1 {M1 GAS, Manfredo, M49} U40393:1-144; AF078113:1-144; AE006568:801-1148; NC_002737:1065030-1065377; AAFV01000096:3459-3112; NZ_AAFV01000096:3459-3112; CP000017:983425-983772; NC_007297:983425-983772; CP000056:985883-986230; NC_007296:985883-986230
GGGGUUGUUACGGAUUCGACAGGCAUUAUGAGGCAUGUUUUGCGUCCCAUCGGCAGAUGUAAAUUGCCAGUUAAAUAUAA
CUGCAAAAAAUACAAACUCUUACGCUUUAGCUGCCUAAAAACCAGCUAGCGUGACUUCUACAAGAUUGCUUGUGUCCUGU
UAGAAGUCUCAAAAUAGCAAGCUACGGUUACGAAAUUGUCUAGUUUCGUGACAAGAGAUUGAUAGACUCGCAAACUAAUG
GCUUGAGUUAUGUGUCUUUAGUUUGUUAAAUGAAGACAUAACCUAUGGACGUAGACAAAUAUGUUGGCAGGUGUUUGGAC
GUGGGUUCGACUCCCACCAGCUCCAuca
>Strpc_pyog2_0551 Streptococcus pyogenes pre-tmRNA, version 2 {MGAS8232, MGAS315, SSI-1, MGAS10394} AE010048:800-1147; NC_003485:1040813-1041160; AE014074:976938-977285; NC_004070:976938-977285; BA000034:1107458-1107805; NC_004606:1107458-1107805; CP000003:986957-987304; NC_006086:986957-987304
GGGGUUGUUACGGAUUCGACAGGCAUUAUGAGGCAUGUUUUGCGUCCCAUCGGCAGAUGUAAAUUGCCAGUUAAAUAUAA
CUGCAAAAAAUACAAACUCUUACGCUUUAGCUGCCUAAAAACCAGCUAGCGUGACUUCUACAAGAUUGCUUGUGUCCUGU
UAGAAGUCUCAAAAUAGCAAGCUACGGUUACGAAAUUGUCUAGUUUCGUGACAAGAGAUUGAUAGACUCGCAAACUAAUG
GCUUGAGUUAUGUGUCUUUAGUUUGUUAAAUGAAGACAUAACCUAUGGACGUAGACAAAUAUGUUGGCAGGUGUUUGGAC
GUGGGUUCGACUCCCACCGGCUCCAuca
>Strpc_pyog3_0651 Streptococcus pyogenes pre-tmRNA, version 3 AX954530:22762-22413; AX954529:322762-322413
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGUAUAUUUCGCGACUCAUCGGCAGAUGUAAAAUGCCAGUUAAAUAUAA
CUGCAAAAAAUACAAAUUCUUACGCAUUAGCUGCCUAAAAAACAGCCUGCGUGAUCUUCACAAGAUUGUUUGCGUUUUGC
UAGAAGGUCUUAUUUAUCAGCAAACUACGUUUGGCUACUGUCUAGUUAGUUAAAAAGAGAUUUAUAGACUCGCUAUGUGA
GGGCUUGAGUUAUGUGUCAUCACCUAGUUAAAUCAAUACAUAACCUAUAGUUGUAGACAAAUAUAUUAGCAGAUGUUUGG
ACGUGGGUUCGACUCCCACCGGCUCCAuau
>Strpc_agal1_0552 Streptococcus agalactiae pre-tmRNA, version 1 {2603V/R, A909} AE014233:14673-14324; CQ655069:293975-293626; NC_004116:922761-922412; AAJQ01000007:28982-29331; NZ_AAJQ01000007:28982-29331; CP000114:1000313-999964; NC_007432:1000313-999964; AAJO01000264:662-314; NZ_AAJO01000264:662-314
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGUAUAUUUCGCGACUCAUCGGCAGAUGUAAAAUGCCAGUUAAAUAUAA
CUGCAAAAAAUACAAAUUCUUACGCAUUAGCUGCCUAAAAAACAGCCUGCGUGAUCUUCACAAGAUUGUUUGCGUUUUGC
UAGAAGGUCUUAUUUAUCAGCAAACUACGUUUGGCUACUGUCUAGUUAGUUAAAAAGAGAUUUAUAGACUCGCUAUGUGA
GGGCUUGAGUUAUGUGUCAUCACCUAGUUAAAUCAAUACAUAACCUAUAGUUGUAGACAAAUAUAUUAGCAGAUGUUUGG
ACGUGGGUUCGACUCCCACCGGCUCCAuau
>Strpc_agal2_0553 Streptococcus agalactiae pre-tmRNA, version 2 {NEM316, 515, COH1} AL766848:13776-13427; AX602177:9778-9429; NC_004368:965776-965427; AX048672:1-302; AX048671:1-302; AX048613:1-302; AX048612:1-302; AAJP01000009:8043-7694; NZ_AAJP01000009:8043-7694; AAJR01000033:11579-11928; NZ_AAJR01000033:11579-11928
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGUAUAUUUUGCGACUCAUCGGCAGAUGUAAAAUGCCAGUUAAAUAUAA
CUGCAAAAAAUACAAAUUCUUACGCAUUAGCUGCCUAAAAAACAGCCUGCGUGAUCUUCACAAGAUUGUUUGCGUUUUGC
UAGAAGGUCUUAUUUAUCAGCAAACUACGUUUGGCUACUGUCUAGUUAGUUAAAAAGAGAUUUAUAGACUCGCUAUGUGA
GGGCUUGAGUUAUGUGUCAUCACCUAGUUAAAUCAAUACAUAACCUAUAGUUGUAGACAAAUAUAUUAGCAGAUGUUUGG
ACGUGGGUUCGACUCCCACCGGCUCCAuau
>Strpc_mutan_0554 Streptococcus mutans pre-tmRNA AE014133:1139684-1139336; NC_004350:1139684-1139336
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGACCUAUUUUGCGACUCAUCUAGCGGAUGUAAAACGCCAGUUAAAUAUA
ACUGCAAAAAAUACAAAUUCUUACGCAGUAGCUGCCUAAAAACCAGCCUGUGUGAUCAAUAACAAAUUGCUUGUGUUUGU
UGAUUGGUCUUAUUGUUAACAAGCUACGUUAGAACUGAGUCAGGCUGUUCUAAAAGAGUUCUACUGACUCGCAUCGUUAG
AGUUUGAGUUAUGUAUUGUAACGGUGUUAAAUAAACACAUAACCUAUAGUUGUAGACAAAUGGGUUAGCAGAUGUUUGGA
CGUGGGUUCGACUCCCACCGGCUCCAuua
>Strpc_gordo_0555 Streptococcus gordonii pre-tmRNA
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGCAUAUUUUGCGACUCAUCUAGCGGAUGUAAAACGCCAGUUAAAUAUA
ACUGCAAAAAAUAAUACUUCUUACGCUUUAGCUGCCUAAAAACCAGCGGGCGUGACCCGAUUCGGAUUGCUUGUGUCUGA
UGACAGGUCUUAUUAUUAGCAAGCUACGGUAGAAUCUUGUCUAGUGAUUUUACAAGAGAUUGAUAGACUCGCUUGAUUUG
GGCUUGAGUUAUGUGUCAAAAUCAAGUUAAAACAAUACAUAGCCUAUGGUUGUAGACAAAUGUGUUGGCAGAUGUUUGGA
CGUGGGUUCGACUCCCACCGGCUCCAuau
>Strpc_pneu1_0556 Streptococcus pneumoniae pre-tmRNA, version 1 {Tigr4, R6} AE005672:821929-822276; AX571762:115616-115963; NC_003028:821927-822274; X99400:61-1; BD003793:11519-11866; AR218881:11519-11866; CQ789022:11519-11866; AR588037:155-1; AR481504:155-1; AAGY01000038:12880-12533; NZ_AAGY01000038:12880-12533
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGCAUAUUUUGCGACUCGUGUGGCGACGUAAACGCUCAGUUAAAUAUAA
CUGCAAAAAAUAACACUUCUUACGCUCUAGCUGCCUAAAAACCAGCAGGCGUGACCCGAUUUGGAUUGCUCGUGUUCAAU
GACAGGUCUUAUUAUUAGCGAGAUACGAUUAAGCCUUGUCUAGCGGUUUGAUAAGAGAUUGAUAGACUCGCAGUUUCUAG
ACUUGAGUUAUGUGUCGAGGGGCUGUUAAAAUAAUACAUAACCUAUGGUUGUAGACAAAUAUGUUGGCAGGUGUUUGGAC
GUGGGUUCGACUCCCACCGGCUCCAuua
>Strpc_pneu2_0557 Streptococcus pneumoniae pre-tmRNA, version 2 {R6, 670-6B} AE008453:8604-8951; NC_003098:773607-773954; AL449925:26352-26699X
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGCAUAUUUUGCGACUCGUGUGGCGACGUAAACGCUCAGUUAAAUAUAA
CUGCAAAAAAUAACACUUCUUACGCUCUAGCUGCCUAAAAACCAGCAGGCGUGACCCGAUUUGGAUUGCUCGUGUUCAAU
GACAGGUCUUAUUAUUAGCGAGAUACGAUUAAGCCUUGUCUAGCGGCUUGAUAAGAGAUUGAUAGACUCGCAGUUUCUAG
ACUUGAGUUAUGUGUCGAGGGGCUGUUAAAAUAAUACAUAACCUAUGGUUGUAGACAAAUAUGUUGGCAGGUGUUUGGAC
GUGGGUUCGACUCCCACCGGCUCCAuua
>Strpc_pneu3_0558 Streptococcus pneumoniae pre-tmRNA, version 3 {23F}
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGCAUAUUUUGCGACUCGUGUGGCGACGUAAACGCUCAGUUAAAUAUAA
CUGCAAAAAAUAACACUUCUUACGCUCUAGCUGCCUAAAAACCAGCAGGCGUGACCCGAUUUGGAUUGCUCGUGUUCAAU
GACAGGUCUUAUUAUUAGCGAGAUACGAUUAAGCCUUGUCUAGCGGCUUGAUAAGAGAUUGAUAGACUCGCAGUUUCUAG
ACUUGAGUUAUGUGUCGAGGGGUUGUUAAAAUAAUACAUAACCUAUGGUUGUAGACAAAUAUGUUGGCAGGUGUUUGGAC
GUGGGUUCGACUCCCACCGGCUCCAuua
>Strpc_mitis_0559 Streptococcus mitis pre-tmRNA
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGCAUAUUUUGCGACUCGUGUGGCGACGUAAACGCUCAGUUAAAUAUAA
CUGCAAAAAAUAACACUUCUUACGCUCUAGCUGCCUAAAAACCAGCAGGCGUGACCCGAUUUGGAUUGCUCGUGUUCAAU
GACAGGUCUUAUUAUUAGCGAGAUACGAUCAAGCCUUGUCUAGCGGCUUGAUAAGAGAUUGAUAGACUCGCGGUUUCUAG
GCUUGAGUUAUGUGUCGAGGGACUGUUAAACGAAUACAUAACCUAUGGUUGUAGACAAAUAUGUUAGCAGAUGUUUGGAC
GUGGGUUCGACUCCCACCGGCUCCAuug
>Strpc_sobri_0560 Streptococcus sobrinus pre-tmRNA
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGCUUGUUUUGCAACCCAUCGGCAGAUGUCAAAAUGCCAGUUAAAUAUA
ACUGCAAAAAAUACAAAUUCUUACGCAGUAGCUGCCUAAACACCAGCCUGUGUGACUAAUAGCAGAUUGCUUGUGUUUGC
CUAUUAGUCUUAAAAUCAGCAAGCUACAUUAGGUUGCAGUCAGGUCAGCCUAAAAGAGAUUUACUGACUCGCAAGAUUUG
GGCUUGAGUUAUGUGUCGAGGUCUUGUUAAACCAAUACAUAACCUAUGGUUGUAGACGAAUAAGUUAGCAGGUGUUUGGA
CGUGGGUUCGACUCCCACCGGCUCCAuag
>Strpc_ther1_0561 Streptococcus thermophilus tmRNA, version 1 (ends unsequenced) {CNRZ1358} AF375568:1-301
CAUUAUGAGGCAUAUUCUGCGACUCGUGUGGCGACGUUAACGCUCAGUUAAAUAUAACUGCAAAAAAUACUAAUUCUUAC
GCUGUAGCAGCCUAAACACCUGCUCGCGUGACUUCUAGCAGAUUGCUUAUGUUUGUUUAGAAGUUUUAUUGAUUUAUAAG
CUACGUUCGAUCAUUGCCUAGCUGGUCGAAAAGAGAUUUAUAGGCUCGCAUAUAGAAGGCUUGAGUUAUGUGUCGCCUAU
CUGUUAAAUGAAAGACAUAACCUAUGGUCGUAGACGAAUAUGUUGGCAGAUGCUUGGACGU
>Strpc_ther2_0562 Streptococcus thermophilus pre-tmRNA, version 2 {LMD-9} AAGS01000057:2408-2757; NZ_AAGS01000057:2408-2757
GGGGCCGUUACGGAUUCGACAGGCAUUAUGAGGCAUAUUCUGCGACUCGUGUGGCGACGUUAACGCUCAGUUAAAUAUAA
CUGCAAAAAAUACUAAUUCUUACGCUGUAGCAGCCUAAACACCUGCUCGCGUGACUUCUAGCAGAUUGCUUAUGUUUGUU
UAGAGGUUUUAUUGAUUUAUAAGCUACGUUCGAUCAUUGCCUAGCUGGUCGAAAAGAGAUUUAUAGGCUCGCAUAUAGAA
GGCUUGAGUUAUGUGUCGUCUAUCUGUUAAAUGAAAGACAUAACCUAUGGUCGUAGACGAAUAUGUUGGCAGAUGCUUGG
ACGUGGGUUCGACUCCCACCGGCUCCAuaa
>Strpc_ther3_0563 Streptococcus thermophilus pre-tmRNA, version 3 {CNRZ1066, LMG 18311} CP000024:560365-560714; NC_006449:560365-560714; CP000023:565181-565530; NC_006448:565181-565530
GGGGUCGUUACGGAUUCGACAGGCAUUAUGAGGCAUAUUCUGCGACUCGUGUGGCGACGUUAACGCUCAGUUAAAUAUAA
CUGCAAAAAAUACUAAUUCUUACGCUGUAGCAGCCUAAACACCUGCUCGCGUGACUUCUAGCAGAUUGCUUAUGUUUGUU
UAGAGGUUUUAUUGAUUUAUAAGCUACGUUCGAUCAUUGCCUAGCUGGUCGAAAAGAGAUUUAUAGGCUCGCAUAUAGAA
GGCUUGAGUUAUGUGUCGCCUAUCUGUUAAAUGAAAGACAUAACCUAUGGUCGUAGACGAAUAUGUUGGCAGAUGCUUGG
ACGUGGGUUCGACUCCCACCGGCUCCAuaa
>Laccc_raffi_0564 Lactococcus raffinolactis tmRNA (ends unsequenced) AF375578:1-304
UGUUGUCGCGUAUGAGCUGCGAUUAGUGCGGCGCCACUCUAAACCGCCGCAGAUAAAUAUAACUGCUAAAAAUACACAAA
CUUACGCAGUAGCUGCCUAAACCACAGCCUGCGUGCCUGACUUUCGCUCGCCUAUGGCGAUUUGAUGGCCUAAUUUAGUA
GGAUACGAUUUGACGGUGUCUUGACGUCAGAGAAGAGAUUAAGAGACUCGCAAGUUAACUUUGUUCGAGGAUUGUCUCGU
UAGCUUGUUAAAUUUAGACAGUCCCUAUGAUUGUAGACGCUGAUAUAGCAAGGCAUUUGGACAG
>Laccc_plant_0565 Lactococcus plantarum tmRNA (ends unsequenced) AF375567:1-304
UGUUGUCGCGUAUGAGCUGCGAUUAGUGAGACGUCACUCUAAACCGUCGCAGAUAAAUAUAACUGCUAAAAAUACACAAA
CUUACGCUUUAGCUGCCUAAACCACAGCCGGCGUGCCAGACUUUCGUUCGCCUAUGACGAUUUGAUGGCCUAAUUUAGUA
GGAUACGCUUUUGUGGUGUCUUGACAUGAAAGAAGAGAUUAAGAGACUCGCCAGCUGACUUUGUUCGAGGAUUGUCUUGU
CAGUUGGGUAAAUUUAGACAGUCCCUAUGAUUGUAGACGCUGAUAUAGCAAGGCAUUUGGACAG
>Laccc_garvi_0566 Lactococcus garvieae tmRNA (ends unsequenced) AF375579:1-308
CAUUGUCGCGCAUGAACUGCAACUGGUGGUGAUGUCACCUAAAUCCAUCGCAGAUAAAUAUAACUGCUAAAAAUAACACU
UCUUACGCACUCGCUGCCUAAACACCAGCUUGCGUAGCUGAUGAUCGUUCGCCGAUGGCGGCCUGAAGCUCUAAACCUCA
GUCGGAUACGUUUUUAUGGUGGCUUUACAUAAAAAAAGAGAUUUUAAAGCACCGCAAAUUUCUGCUGUUUGAGACUGGCU
UUGGAAAUUUGUUAAACUAGAGAAAGUCCUAUGGUUGUAGACGUUGAUGUAGCAAGGUGUCUGGACAG
>Laccc_lact1_0567 Lactococcus lactis pre-tmRNA, version 1 {Il1403, CNRZ124, Il1403, CNRZ124, IL986, CNRZ188} AE006373:6190-5832; NC_002662:1457456-1457098; AF375553:1-310; AF375566:1-310; AF375562:1-310; AF375565:1-310
GGGGGCGUUACGGAUUCGACAGGCAUUGUCGCGCAUGAACUGCAACUGCUGAGGGAUCAGGAUAAUCAUCCGCAGAUAAA
UAUAACUGCUAAAAAUAAUACACAAACUUACGCAAUGGCAGCCUAAACAGCACCAUGCGUGCCUGAUUUUUGCUCUCUGA
UGGCAAUUUGACGGCCUAAACUUUUAGUCAGAUACGUUGUUGUGGAGGCUUGACGCAGCAAAAGAGAUUUAAAGCCCCGC
AAAAUGUCGCUGUUUGAGACUGGCUUUGGCAUUUUGUUAAAUUUGAGAAAGUCCUAUGGUUGUAGACGUUGAUGUAGCAA
GGUGUUUGGACAGGGGUUCGACUCCCCUCGCCUCCAuug
>Laccc_lact2_0568 Lactococcus lactis pre-tmRNA, version 2 {MG1363, CNRZ112, CNRZ355, IL582, CNRZ119, IL960, IL2961, SK11} AF176556:601-243; AF375563:1-310; AF375559:1-310; AF375556:1-310; AF375564:1-310; AF375560:1-310; AAGO01000140:788-430; NZ_AAGO01000140:788-430
GGGGGCGUUACGGAUUCGACAGGCAUUGUCGCGCAUGAACUGCAACUGCUGAGGGAUCAGGAUAAUCAUCCGCAGAUAAA
UAUAACUGCUAAAAAUAAUACACAAACUUACGCAAUGGCAGCCUAAACAGCACCAUGCGUGCCUGAUUUUUGCUCACUGA
UGGCAAUUUGACGGCCUAAACUUUUAGUCAGAUACGUUGUUGUGGAGACUUGACGCAGCAAAAGAGAUUUAAAGUCCCGC
AAAAUGUCGCUGUUUGAGACUGGCUUUGGCAUUUUGUUAAAUUUGAGAAAGUCCUAUGGUUGUAGACGUUGAUGUAGCAA
GGUGUUUGGACAGGGGUUCGACUCCCCUCGCCUCCAuua
>Laccc_lact3_0569 Lactococcus lactis tmRNA, version 3 (ends unsequenced) {CNRZ337, NCDO2118, IL638, IL2962, IL890} AF375561:1-310; AF375552:1-310; AF375557:1-310; AF375555:1-310; AF375558:1-310
CAUUGUCGCGCAUGAACUGCAACUGCUGAGGGAUCAGGAUAAUCAUCCGCAGAUAAAUAUAACUGCUAAAAAUAAUACAC
AAACUUACGCAAUGGCAGCCUAAACAGCACCAUGCGUGCCUGAUUUUUGCUCACUGAUGGCAAUUUGACGGCCUAAACUU
UUAGUCAGAUACGUUGUUGUGGAGGCUUGACGCAGCAAAAGAGAUUUAAAGCCCCGCAAAAUGUCGCUGUUUGAGACUGG
CUUUGGCAUUUUGUUAAAUUUGAGAAAGUCCUAUGGUUGUAGACGUUGAUGUAGCAAGGUGUUUGGACAG
>Laccc_lact4_0570 Lactococcus lactis tmRNA, version 4 (ends unsequenced) {IL2961} AF375554:1-310
CAUUGUCGCGCAUGAACUGCAACUGCUGAGGGAUCAGGAUAAUCAUCCGCAGAUAAAUAUAACUGCUAAAAAUAAUACAC
AAACUUACGCAAUGGCAGCCUAAACAGCACCAUGCGUGCCUGAUUUUUGCUCACUGAUGGCAACUUGACGGCCUAAACUU
UUAGUCAGAUACGUUGUUGUGGAGGCUUGACGCAGCAAAAGAGAUUUAAAGUCCCGCAAAAUGUCGCUGUUUGAGACUGG
CUUUGGCAUUUUGUUAAAUUUGAGAAAGUCCUAUGGUUGUAGACGUUGAUGUAGCAAGGUGUUUGGACAG
>Actmy_naesl_0455 Actinomyces naeslundii pre-tmRNA
GGGGAUGAUCGGUUUCGACGACGGUCGUAGGUUCAGGAGAAGCGGGUCGAGGAUGCGCAGUCAUCUCGUCAACGCUCUGC
GCGAACCAAUAGGUGCCGAUAACACUCGCACCGACUUCGCCCUCGCCGCCUGAGCGAGCCUCGAAGUCCGUCAGCCCGGG
GAACGCUUCCGCCCCGGUUCCUGGCGUCAUCUAGGAAGCCACUGCUGAGAGCCCGUGUCGGUAGGGCUCUCGGGACUUUU
CAUCGACUGAGCCCGUCGGCGUCCUUGCUCGCGUGAGACGCCGGGGCUGAGAAAAACGCUAGCGAGCUGCACCCGGAGAA
GUCCUGUUGUGCGGCCGUCGGACGGGGGUUCGAUUCCCCCCAUCUCCACga
>Uncul_hook2_0642 Uncultured hookworm2 pre-tmRNA (ends unsequenced) BM130131:10-285
AGGAGAAGCGGGCCGAGGAUGCAGGCUUAUCUCGUAAACGAUGUCUGCAAAACACAGGUGCCGAUAACAAGCGCACCGAC
UUCGCCCUCGCCGCCUGAGCGAGCCCCGAAGUCCGUCAGCCCGAGCUAGCUCUCGACUCGGAUCCUGGCGUCAUCUAUAG
AGCCACUGCUCGCAGUCCUCGUCACCGGGGCUGCGGGGACUUUCAGGUGACUGAGCCCGUCCGCAUCUUGUCUGCGUGAG
UGCGGGGGCCGAGAAAAACGACAGCAGACUGCGCCC
>Brevi_linen_0482 Brevibacterium linens pre-tmRNA AAGP01000004:107195-107571; NZ_AAGP01000004:107195-107571
GGGGAUGAUCGGUUUCGACGUCGGACACUGCGACGGGAGAAGCGGGCCGAGAAUGUAGAGUCAUCUCGUUAAUGUCCUCU
GCAAAACAAUAGGUGCUAAGUCUAAUAACCGCACCGAUUUCGCCCUCGCUGCCUGAUUAGGCCGAGCUGCGAAUCCGUCA
GUCUAGAGUUGCUUCCACUCUAGGUCCUGGCGUCGCUUAGGGAGCCACUGCUUCAGAUAUUUGUUGAGGGUAUCUGAGGG
ACUUUUACUCAACUCCGUUCGUUGGUCCACAUGUUCGUGUGAGGGCCAGAACCUAAGAAACUACUUCACGAACUGCGCCC
GGAGAAGUCCUGACAAUCUGCCGACGGACGCGGGUUCGAUUCCCGCCAUCUCCACCc
>Artbr_sFB24_0618 Arthrobacter FB24 tmRNA AAHG01000006:254917-254549; NZ_AAHG01000006:254917-254549
GGGGAUGAUCGGUUUCGACGAUGUUAGUCGCGACAGGUGAAGCGGGCCGAGGAUGCAGAAUUAUCUCGUAAACGCUGUCU
GCAAAACAAUAAGUGCCAAACAAACGCGCACUGACUUCGCUCUCGCUGCCUAAGCAGUAAGACAGUCCGUCAGCCCGGGA
UUGCUAUCGUCCCGGUUCCUGGCGUCAUUAAGAUAGCCACUGCUGUUUACCUUCGUCAUUGGGGUGAACGGGACUCUUAG
AUGACUGGGCCCGGAUCAGCUACUUGUUUGCAGGAUAGCUGGGGCCGAGAAAAUCCGACGCAAACUGCGCCCGGAGAAGC
CCUGACAACACGACAUCGGACGGGGGUUCAAUUCCCCCCAUCUCCACCA
>Kocur_varia_0727 Kocuria varians pre-tmRNA (5-prime end unsequenced) DQ074451:4897-4847
CCGGCGUAUUGGAGCUUCUGGACGUGGGUUCGACUCCCACCGUCUCCAuau
>Troph_whipp_0479 Tropheryma whipplei pre-tmRNA BX251411:292510-292142; NC_004551:616510-616142; AE014184:278117-278485; NC_004572:278117-278485
GGGGAUGACUGGUUUCGACGCUGUUUGUGUACUCGUGGGAAGCGGGUCGAGGAUGCGAGGUUGUCUCGUUAACGAUCCUC
GCAAAAUAUAAGUGCCAACUUAAAGCGCACUGAUCUAAGUCUUGCUGCUUAAGCGCUUAGAUCUGUCGGUAUAGGGCUUG
UCUUCGGCCCUGUAUCCGGCAUGGUUUUAGAGGACUUGCCGCGUGUUUGCCGCUUGCGUGAACACCGGGACUUUAUUGCA
AGCUGGGCCUGUUGAUUUAGAUUCCGCUGCAAAGAAUCAGGGCUGAGUAUAACGGUUUUAGCGGAUACACCCGUAGAAGU
CACGGGCUCCAUGCCGCGGACGGGGGUUCGAUUCCCCCCAUCUCCACug
>Clavi_michi_0480 Clavibacter michiganensis tmRNA
GGGGAUGAUCGGUUUCGACAUUGCCUGAAUGACUGCGAGAAGCGGGUCGAGGAUGCAGGGCUAUCUCGUAAACGCUCUCU
GCAAAAUACAACUGCCAAUAACAAGCAGUCGUCCUUUGUUCUCGCUGCCUAAGCGAGCGCACUAACAGGACCGUCGACCC
GGUGAUGCUCUCUAUCCGGUAAGUCGGCGUCAGAAAAGGGAGCUCGCUGCGCGGUCGUGCCUCAGGGCCGCGCGGGACUC
GAACUGAGGCUGGGCCCGUCGGAUCAGAUGCCAGGAGCAAGUUCCGGGGCCGAGCAGGACGCCUUUCCUGGAUACACCCG
UAGAAGGCGCAGGAUUACAGCAGUGGACCGGGGUUCGAUUCCCCGCAUCUCCACCA
>Leifso_xyli_0481 Leifsonia xyli tmRNA AE016822:1400978-1400585; NC_006087:1400978-1400585
GGGGAUGAUCGGUUUCGACAUUGUCUGCGUGAGUAUGAGAAGCGGGUCGAGGACGCAUGGUUAUCUCGUUAACGAUCCAU
GCAAAAAAUAAGUGCCAAUUCCAAGAGCACUGUCUCGGCCAAGGCCGACUUCGCCCUCGCGGCGUAAGUUCACCUCAGCC
AUCUGAAGAGGCCGUCAGACCGGGAACUGUUCUCUACCCGGAGCCUGGCGUCAGUGAGAGAACUCGCUUCUGCGUUGAGU
AUCAGGGCGCAGAGGGACUUCAACUGAUACUAGGCCCGCCGGAACAGGUGCCAGCGACACGUUCCGGGGCCGAGAAAGCG
ACACACUGGCUACGCCCGUAGAAGGCAUAUGACCACAGCAGUGGACGGGGGUUCGAUUCCCCCCAUCUCCACCA
>Coryn_dipht_0468 Corynebacterium diphtheriae tmRNA BX248356:37148-37532; NC_002935:727118-727502
GGGGCUGAUUUUGGUUUCGACUGCGUGCAUUAAGCUAGGGGAAGCGUGCCGGUGCAGGCUAGAGACCACCGAUUUUAAGC
GUCGUAGCAAAUAUAUAAGCGCAGAGAACACUCAGCGCGACUACGCCCUCGCUGCCUAAUUUGCAGCGACCUGCGUGUCU
GUCAGCCUAGAUUCGUCUCUGGUUUAGUGUCUGGCAUCGAUUAAGAGACUUGCUGGUUUGUUGUGUCAACGGGGCAAACU
GGGACUUUCACCGAUGACUGGGCUCAUCAUCCGGGUGUGUUCGUCCAAGCCGGAGAGCCGAGUAGAGAUCCACGCGCGAA
CUGCGCACGGAGAAGCCCUAGCGAGGUGACGUAGGACCCGGGUUCAAUUCCCGGCAGCUCCACCA
>Coryn_gluta_0469 Corynebacterium glutamicum pre-tmRNA BA000036:847074-847450; AX127145:247074-247450; NC_003450:847074-847450; BX927150:150689-151065; NC_006958:848547-848923
GGGGCUGACAUGGUUUCGACUACGUUGAUUUAGCCAGGGGAAGCGUGCCGGUGAAGGCUGGAGACCACCGUAAGCGUCGC
AGCAAACCAAUAAGCGCCGAGAAGUCUCAGCGCGACUACGCCCUCGCUGCAUAAGCAAGCGACCGCGUGUCUGUCAGCCU
AGGGAAGUCCCUGACCUAGAUCCUGGCAUCGACUAAGGGACUUGCUGUUCAAUCGCGUCAGCGGGGUUGAACAGGACUUU
UACCGUUGACUGGGCUCAUCAUCCGGAAGUGUUCGUCCUAGCCGGAGGGCCAAGCAGAGAUCUUUGCGCGAACUGCGCAC
GGAGAAGCCCUGGCGAGGUGACGUAGGACCCGGGUUCAAUUCCCGGCAGCUCCACCg
>Coryn_effic_0470 Corynebacterium efficiens pre-tmRNA BA000035:872709-873084; NC_004369:872709-873084
GGGGCUGACAUGGUUUCGACUACGUUGAUUGAGCCAGGGGAAGCGUGCCGGUGAAGGCUGGAGACCACCGUGAGCGUCGC
AGCAAACCAAUAAGCGCCGAGAAGACUCAGCGCGACUACGCCCUCGCUGCCUAAGUAGCGACCGCGUGUCUGUCAGCCCG
GGGAUGUCCCUGCCCCGGAUGCUGGCAUCGACUAAGGGACUUGCUAUCCAACCGCGUCAGCGGGGUUGGAUGGGACUUCU
ACCGCUGACUGGGCCCAUCAUCCGGAUGUGUUCGUCCUAGCCGGAGGGCCAAGCAGAGAUCGCUGCACGAACUGCGCACG
GAGAAGCCCUGGCAAAGUAGCGUAGGACCCGGGUUCAAUUCCCGGCAGCUCCACga
>Gordo_rubri_0467 Gordonia rubripertincta tmRNA (ends unsequenced) AY911523:1-329
UGCGUACGUUGAGGUAGGGGAAGCGUGUCGGUGCAGGCAAGAGACCACCGUAAGCGUCGCUGCAAACAUAUAAGCGCCGA
UUCCAAUCAGCGCGACUACGCACUCGCUGCCUAAGUAGCGACUGCGUGUCUGUCAGUCCGGGUUCGCCCUCGGCCCGGGU
ACUGGCAUCAGCUAGAGGGCUUUACCGUUCGACUCGGUCGCGGAGUCGAACGGGACAACCAACAGCGACUGGGAUCGUCA
UCCUGGCUUGUUUGCGAGACUGGGAGAUCCAAGUAGAGACAUAGCAAACUGCACACGGAGAAGCCCUAGCUUUGCUGCGG
AGGACCCGG
>Mycbm_aviu1_0456 Mycobacterium avium pre-tmRNA, version 1 {104}
GGGGCUGAAAGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAACUGACCACCGUAAGCGUCGUU
GCAAAUAGAUAAGCGCCGAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACAGCUAGUCCGUCAGCCCGGGAA
CGCCCUCGACCCGGAGCCUGGCGUCAGCUAGAGGGAUCCACCGAUGAGUUCGGUCGCGGGACUCAUCGGGACACCAACAG
CGACUGGGAUCGUCAUCCUGGCUUGUUCGCGUGACCAGGAGAUCCGAGUAGAGGCAUAGCGAACUGCGCACGGAGAAGCC
UUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACug
>Mycbm_aviu2_0457 Mycobacterium avium pre-tmRNA, version 2 {k10} AE016958:3520218-3519851; NC_002944:3520218-3519851
GGGGCUGAAAGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAACUGACCACCGUAAGCGUCGUU
GCAAAUAGAUAAGCGCCGAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACAGCUAGUCCGUCAGCCCGGGAA
CGCCCUCGACCCGGAGCCUGGCGUCAGCUAGAGGGAUCCACCGAUGAGUUCGGUCGCGGGACUCAUCGGGACACCAACAG
CGACUGGGAUCGUCAUCCUGGCUUGUUCGCGUGACCAGGAGAUCCGAGUAGAGGCAUAGCGAACUGCGCACGGAGAAGCC
UUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACCg
>Mycbm_scrfl_0652 Mycobacterium scrofulaceum pre-tmRNA (ends unsequenced) AX048664:1-320; AX048663:1-320
ACAUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUUGCAACCAAUUAAGCGCC
GAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACAGCUAGUCCGUCAGACCGGGAAAGCCCUCGACCCGGAGC
CUGGCGUCAGCUAGAGGGAUCAACCGAUGAGUUCGGUCGCGGGACUCAUCGGGACACCAACAGCGACUGGGAUCGUCAUC
CUGGCUAGUCCGCGUGACCAGGAGAUCCGAGCAGAGGCAUAGCGGACUGCGCACGGAGAAGUCUUGAGGGAAUGCCGUUG
>Mycbm_intra_0653 Mycobacterium intracellulare pre-tmRNA (ends unsequenced) AX048662:1-320; AX048661:1-320
ACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAACCGACCACCGUAAGCGUCGUUGCAAACAGAUAAGCGCC
GAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACAGCUAGUCCGUCAGACCGGGAACGCCCUCGACCCGGAGC
CUGGCGUCAGCUAGAGGGAUCCACCGAUGAGUCCGGUCGCGGGACUUAUCGGGACACCAACAGCGACUGGGAUCGUCAUC
UCGGCUUGUUCGCGUGACCGGGAGAUCCGAGUAGAGGCAUAGCGAACUGCGCACGGAGAAGUCUUGAGGGAAUGCCGUAG
>Mycbm_xenop_0654 Mycobacterium xenopi pre-tmRNA (ends unsequenced) AX048660:1-320; AX048659:1-320
ACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUUGCAACUAAAUAAGCGCC
GAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACAGCUAGUCCGUCAGGCCGGGAGUUCCCUCGACCCGGAUC
CUGGCGUCAGCUAGAGGGAUCCACCGAUGGGUUCGGUCGCGGGACCCAUCGGGACACCACACAGCGACUGGGAUCGCCGU
CCCGGCUAGUUCGCGAGACCGGGAGAUCCGAGUAAGGGCAAAGCGAACUGCGCACGGAGAAGCCUUGAGGGUAUGCCGUA
>Mycbm_flave_0655 Mycobacterium flavescens pre-tmRNA (ends unsequenced) AX048652:1-321; AX048651:1-321
ACUUCGAGCGUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUUGCAACCAAUUAAGCGCC
GAUUCCAAUCAGCGCGACUACGCACUCGCUGCCUAAGCGACUGCGUGUCUGUCAGCCCGGGAGAGCCCUCGACCCGGUGU
CUGGCAUCAGCUAGAGGGAUAAACCGGUGGGUCCGGUCGCGGGACUCAUCGGGACAUCAAACAGCGACUGGGAUCGUCAU
CCUGACUUGUUCGCGUGAUCAGGAGAUCCGAGUAGAGACAUAGCGAACUGCGCACGGAGAAGCCUUGAGGGAACGCCGUA
G
>Mycbm_malmo_0656 Mycobacterium malmoense pre-tmRNA (ends unsequenced) AX048650:1-320; AX048649:1-320
ACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUUGCAACCAUAUAAGCGCC
GUUUCAACACAGCGCGACUACGCUCUCGCUGCCUAAGCGACAGCUAGUCCGUCAGACCGGGAACGCCCUCGACCCGGAGC
CUGGCGUCAGCUGGAGGGAUCCACCGGUGAGUCCGGUCGCGGGACUCAUCGGGACAUACACAGCGACUGGGAUCGUCAUC
CUGGCUGGUUCGCGUGACCGGGAGAUCCGAGCAGAGGCAUAGCGAACUGCGCACGGAGAAGCCUUGAGGGAAUGCCGUAG
>Mycbm_szulg_0657 Mycobacterium szulgai pre-tmRNA (ends unsequenced) AX048648:1-320; AX048647:1-320
ACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUUGCAACCAAUUAAGCGCC
GAGAACACUCAGCGCGACUUCGCUCUCGCUGCCUAAGCGACAGCAAGUCCGUCAGACCGGGAAAGCCCUCGACCCGGACC
CUGGCGUCAUCUAGAGGGAUCCACCGGUGAGUUCGGUCGCGGGACUCAUCGGGACACCAACAGCGACUGGGAUCGUCAUC
CUGGCUAGUUCGCGUGACCAGGAGAUCCGAGUAGAGACAUAGCGAACUGCGCACGGAGAAGCCUUGAGGGAAUGCCGUAG
>Mycbm_chelo_0658 Mycobacterium chelonae pre-tmRNA (ends unsequenced) AX048646:1-320; AX048645:1-320
ACAGCGAGUCUCGACUUAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCAUUGCAACCAAUUAAGCGCC
GAUUCUCAUCAGCGCGACUACGCACUCGCUGCCUAAGCGACUGCGUGUCUGUCAGACCGGGAGCGCCCUCAGCCCGGACC
CUGGCAUCAGCUAGAGGGACAAACUACGGGUUCGGUCGCGGGACCCGUAGGGACAUCAAACAGCGACUGGGAUCGUCAUC
UCGGCUUGUUCGCGGGACCGAGAGAUCCAAGUAGAGGCAUAGCGAACUGCGCACGGAGAAGCCUUAAUGAACGGCCGUUG
>Mycbm_kansa_0659 Mycobacterium kansasii pre-tmRNA (ends unsequenced) AX048644:1-319; AX048643:1-319
ACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUUGCAACCAAAUAAGCGCC
GAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCAGACCGGGACCGCCCUCGACCCGGACU
CUGGCAUCAGCUAGAGGGAUCAACCGAUGAGUUCGGUCGCGGGACUCGUCGGGACACCAACAGCGACUGGGAUCGUCAUC
CUGGCUAGUUCGCGUGACCAGGAGAUCCGAGCAGAGGCAUAGCGAACUGCGCACGGAGAAGCCUUGAGGGAAUGCCGUA
>Mycbm_gordo_0660 Mycobacterium gordonae pre-tmRNA (ends unsequenced) AX048642:1-319; AX048641:1-319
ACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUUGCAACCAUAUAAGCGCC
GAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCGGACCGGGAACGCCCUCGCCCCGGACC
CCGGCAUCAGCUAGAGGGAUCAACCGAUGAGUUCGGUCGCGGGACUCAUCGGGACACCAACAGCGACUGGGAUCGUCAUC
CUGGCUAGUCCGUGUGACCAGGAGAUCCGAGCAGAGACAUAGCGGACUGCGCACGGAGAAGCCUUGAGGGAAUGCCGUA
>Mycbm_bovis_0458 Mycobacterium bovis pre-tmRNA BX248344:299881-299514; NC_002945:3424881-3424514; AF440352:1-318X; AX048522:1-318X; AX048523:1-318X
GGGGCUGAACGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUU
GCGACCAAAUAAGCGCCGAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCAGACCGGGAA
CGCCCUCGGCCCGGACCCUGGCAUCAGCUAGAGGGAUCCACCGAUGAGUCCGGUCGCGGGACUCCUCGGGACAACCACAG
CGACUGGGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCCGAGCAGAGGCAUAGCGAACUGCGCACGGAGAAGCC
UUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACCg
>Mycbm_micr1_0459 Mycobacterium microti pre-tmRNA, version 1
GGGGCUGAACGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUU
GCGACCAAAUAAGCGCCGAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCAGACCGGGAA
CGCCCUCGGCCCGGACCCUGGCAUCAGCUAGAGGGAUCCACCGAUGAGUCCGGUCGCGGGACUCCUCGGGACAACCACAG
CGACUGGGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCCGAGCAGAGGCAUAGCGAACUGCGCACGGAGAAGCC
UUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACCg
>Mycbm_micr2_0661 Mycobacterium microti pre-tmRNA, version 2 (ends unsequenced) AX048656:1-319; AX048655:1-319
ACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUUGCGACCAAAUAAGCGCC
GAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCAGACCGGGAACGCCCUCGGCCCGGACC
CUGGCAUCAGCUAGAGGGAUCCACCGAUGAGUCCGGUCGCGGGACUCCUCGGGACAGCCACAGCGACUGGGAUCGUCAUC
UCGGCUAGUUCGCGUGACCGGGAGAUCCGAGCAGAGGCAUAGCGAACUGCGCACGGAGAAGCCUUGAGGGAAUGCCGUA
>Mycbm_tube1_0460 Mycobacterium tuberculosis pre-tmRNA, version 1 {H37Rv, CDC1551} X60301:86-452; X70031:2933-3299; BX842582:671-304; NC_000962:3468334-3467967; AA465084:2-214X; AA465073:219-1X; AA465085:203-8X; AA465086:203-8X; AA465087:203-3X; AE000516:3464130-3463763; NC_002755:3464130-3463763; AAIX01000034:91776-91409; NZ_AAIX01000034:91776-91409; AAKR01000136:31055-30688; NZ_AAKR01000136:31055-30688
GGGGCUGAACGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUU
GCGACCAAAUAAGCGCCGAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCAGACCGGGAA
CGCCCUCGGCCCGGACCCUGGCAUCAGCUAGAGGGAUCCACCGAUGAGUCCGGUCGCGGGACUCCUCGGGACAACCACAG
CGACUGGGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCCGAGCAGAGGCAUAGCGAACUGCGCACGGAGAAGCC
UUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACCg
>Mycbm_afric_0673 Mycobacterium africanum pre-tmRNA (ends unsequenced) AX048640:1-319; AX048639:1-319
GGGGCUGAACGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUU
GCGACCAAAUAAGCGCCGAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCAGACCGGGAA
CGCCCUCGGCCCGGACCCUGGCAUCAGCUAGAGGGAUCCACCGAUGAGUCCGGUCGCGGGACUCCUCGGGACAACCACAG
CGACUGGGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCCGAGCAGAGGCAUAGCGAACUGCGCACGGAGAAGCC
UUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACCg
>Mycbm_tube2_0461 Mycobacterium tuberculosis pre-tmRNA, version 2 {210}
GGGGCUGAACGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUU
GCGACCAAAUAAGCGCCGAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCAGACCGGGAA
CGCCCUCGGCCCGGACCCUGGCAUCAGCUAGAGGGAUCCACCGAUGAGUCCGGUCGCGGGACUCCUCGGGACAACCACAG
CGACUGGGAUCGUCAUCUCGGCUAGUUCGCGUGACCGGGAGAUCCAAGCAGAGGCAUAACGAACUGCGCACGGAGAAGCC
UUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACCg
>Mycbm_lepra_0462 Mycobacterium leprae pre-tmRNA Z98271:13310-12942; AL583919:121055-121423; NC_002677:809055-809423
GGGGCUGAAAGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUU
GCAGCAAUAUAAGCGCCGAUUCAUAUCAGCGCGACUAUGCUCUCGCUGCCUAAGCGAUGGCUAGUCUGUCAGACCGGGAA
CGCCCUCGUCCCGGAGCCUGGCAUCAGCUAGAGGGAUCUACCGAUGGGUUCGGUCGCGGGACUCGUCGGGACACCAACCG
CGACUGGGAUCGUCAUCCUGGCUAGUUCGCGUGAUCAGGAGAUCCGAGUAGAGGCAUAGCGAACUACGCACGGAGAAGCC
UUGAGGGAAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACCg
>Mycbm_mari1_0463 Mycobacterium marinum pre-tmRNA, version 1
GGGGCUGAACGGUUUCGACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGAU
GCAACUAGAUAAGCGCCGAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCGGACCGGGAA
CGCCCUCGCCCCGGACCCCGGCAUCAGCUAGAGGGAUCAACCGAUGAGUUCGGUCGCGGGGCUCAUCGGGACAUCAACAG
CGACUGGGAUCGUCAUCCUGGCUAGUUCGCGUGACCAGGAGAUCCGAGCAGAGACAUAGCGGACUGCGCACGGAGAAGCC
UUGAGGGAAUGCCGUAGGACCCGGGUUCGAUUCCCGGCAGCUCCACaa
>Mycbm_mari2_0662 Mycobacterium marinum pre-tmRNA, version 2 (ends unsequenced) AX048654:1-320; AX048653:1-320
ACUUCGCGCAUCGAAUCAAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGAUGCAACUAGAUAAGCGCC
GAUUCACAUCAGCGCGACUACGCUCUCGCUGCCUAAGCGACGGCUAGUCUGUCGGACCGGGAACGCCCUCGCCCCGGACC
CCGGCAUCAGCUAGAGGGAUCAACCGAUGAGUUCGGUCGCGGGGCUCAUCGGGACAUCAACAGCGACUGGGAUCGUCAUC
CUGGCUAGUUCGCGUGACCAGGAGAUCCGAGCAGAGACCUAGCGGACUGCGCACGGAGAAGCCUUGAGGGAAUGCCGUAG
>Mycbm_smegm_0464 Mycobacterium smegmatis tmRNA AX048658:1-321; AX048657:1-321
GGGGCUGAACGGUUUCGACUUCGAGCAUCGAAUCCAGGGAAGCGUGCCGGUGCAGGCAAGAGACCACCGUAAGCGUCGUU
GCAACCAAUUAAGCGCCGAUUCCAAUCAGCGCGACUACGCCCUCGCUGCCUAAGCGACGGCUGGUCUGUCAGACCGGGAG
UGCCCUCGGCCCGGAUCCUGGCAUCAGCUAGAGGGACCCACCCACGGGUUCGGUCGCGGGACCUGUGGGGACAUCAAACA
GCGACUGGGAUCGUCAUCUCGGCUUGUUCGUGUGACCGGGAGAUCCGAGUAGAGACAUAGCGAACUGCGCACGGAGAAGC
CUCGAGGACAUGCCGUAGGACCCGGGUUCAAUUCCCGGCAGCUCCACCA
>Nocar_farci_0466 Nocardia farcinica pre-tmRNA AP006618:4642707-4642340; NC_006361:4642707-4642340
GGGGCUGAACGGUUUCGACUGCGUACGUUGAUUCAGGGGAAGCGUGUCGGUGCAGGCAAGAGACCACCGUAAGCGUCGCU
GCAACCAAUUAAGCGCCGAUUCUCAUCAGCGCGAGUACGCUCUCGCUGCCUAAGCGAAGCGUCUCUGUCGGCCCGGGAUA
UGCCCUCGGUCCCGGUGCCGGCAUCAGCUAGAGGGCUCACCGUCCGCCUCGGUCGCGGAGACGGACGGGACAUCCAACAG
CGACUGGGAUCGUCAUCUCGGCUUGUUCGCGUGACCGAGAGAUCCGAGCAGAGACACAGCGAACUGCACACGGAGAAGCC
CUGAAGACGCGGCGGAGGACCCGGGUUCGAUUCCCGGCAGCUCCACga
>Nocar_aste1_0663 Nocardia asteroides pre-tmRNA, version 1 (ends unsequenced) AX048666:1-325
ACUGUGUGCGCCGAGGUAGGGGAAGCGUGUCGGUGCAGGCUGGAGACCACCGUUAAGCGUCGCGGCAACCAAUUAAGCGC
CGAUUCCAAUCAGCGCGACUACGCCCUCGCUGCCUGAUCAGCGACGGCUAGCUGUCGGCCCGGGUUGUGUUCCCGAACCC
GGAUGCCGGCAUCAUCUCAGGGAACUCACCGUGUUCGCCGGUCGCGGACGGACACGGGACAGCAAACAGCGACUGGGAUC
GUCAUCUCGGCUUGUUCGCGUGACCGGGAGAUCCAAGUAGAGACAUAGCGGCUGCACACGGAGAAGCCCUACUGACUCGA
CACAG
>Nocar_aste2_0664 Nocardia asteroides pre-tmRNA, version 2 (ends unsequenced) AX048665:1-326
ACUGUGUGCGCCGAGGUAGGGGAAGCGUGUCGGUGCAGGCUGGAGACCACCGUUAAGCGUCGCGGCAACCAAUUAAGCGC
CGAUUCCAAUCAGCGCGACUACGCCCUCGCUGCCUGAUCAGCGACGGCUAGCUGUCGGCCCGGGUUGUGUUCCCGAACCC
GGAUGCCGGCAUCAUCUCAGGGAACUCACCGUGUUCGCCGGUCGCGGACGGACACGGGACAGCAAACAGCGACUGGGAUC
GUCAUCUCGGCUUGUUCGCGUGACCGGGAGAUCCAAGUAGAGACAUAGCGGACUGCACACGGAGAAGCCCUACUGACUCG
ACACAG
>Rhococ_equi_0465 Rhodococcus equi tmRNA (ends unsequenced) AY846303:1-326
UGCGUACGUUGAGCAAGGGGAAGCGUGUCGGUGCAGGCAAGAGACCACCGUAAGCGUCGCUGCAACCAAUUAAGCGCCGA
GUCCACUCAGCGCGAGUACGCCCUCGCUGCCUAAGCGAGCGCGUCUCUGUCAGCCCGGGUUUGCUCUCGACCCGGAUCCU
GGCAUCGACUAGAGAGCUCUACCGUACGGCUCGGUCGCGGAGACGUGCGGGACAACAAACAGCGACUGGGAUCGUCAUCU
CGUCUUGUUCGCGAGAACGGGAGAUCCGAGUAGAGACAUAGCGAACUGCACACGGAGAAGCCCUCGCGAGGCGGCGGAGG
ACCCGG
>Propi_acne1_0471 Propionibacterium acnes pre-tmRNA, version 1 AE017283:1467918-1467548; NC_006085:1467918-1467548
GGGGAUGACUGGUUUCGACUUGGAAUGGUUGUUCCAGGAGAAGCGGGCCGAGGACCCAGGGUCAACUCGUUAACGAUCCU
UGGAAACCUAUAAGUGCCGAGAACACUCGCACUGACUUCGCUCUCGCUGCCUGAUCAGUGAUCGAAGGGUCAGCCCGGAU
GUAGCCUUCCGUCCGGAUCCUGGCCUCGUUUAGAAGGCUUGCCGUACAGCUGUGGUCACGGGGGCUGUACGGGACGUUUA
CGUGACUGGGCUUGUCUGCACCAUGUCGGUGUGAGUGCAGGAGCCGAGCAAUAACGACAGCAUCGACUGCGCCCGGAGAA
UGUCUGGACGGUCUUUCAAGGACGCGGGUUCAAUUCCCGCCAUCUCCACua
>Propi_acne2_0665 Propionibacterium acnes pre-tmRNA, version 2 CQ363774:35349-34979
GGGGAUGACUGGUUUCGACUUGGAAUGGUUGUUCCAGGAGAAGCGGGCCGAGGACCCAGGGUCAACUCGUUAACGAUCCU
UGGAAACCUAUAAGUGCCGAGAACACUCGCACUGACUUCGCUCUCGCUGCCUGAUCAGUGAUCGAAGGGUCAGCCCGGAU
GUAGCCUUCCGUCCGGAUCCUGGCCUCGUUUAGAAGGCUUGCCGUACAGCUGUGGUCACGGGGGCUGUACGGGACGUUUC
CGUGACUGGGCUUGUCUGCACCAUGUCGGUGUGAGUGCAGGAGCCGAGCAAUAACGACAGCAUCGACUGCGCCCGGAGAA
UGUCUGGACGGUCUUUCAAGGACGCGGGUUCAAUUCCCGCCAUCUCCACua
>Propi_acnp1_0472 Propionibacterium acnes pseudo-tmRNA, version 1 (defective, missing 5-prime end) AE017283:1466583-1466231; NC_006085:1466583-1466231
gagcuguagugcagcguuuuccggacGGUUGUUCCAGGAGAAGUGGGGUGAGGGCCCAGGGUCAACUUGUUAACGAUCGU
UGGGAAUCUAUAAGUGCCGAGAAUACUCGCACUGACUUCGCUCUUGCUGCCUGAUCAGUGAUCGAAGGGUCAGCCCGGAU
UCUGGUUUCGUUGCGAUGACUUGCCGCCCAGUUGUUGUCGUGGUGACUGGGCGGAAUUAUUUCUACGAUCGAGUUUGUUU
GCACCAUGUCGGUGUGAGUGCAGGAGCCGAGCAAUAACGACAGCAUCGACUGCGCCCGGAAAAUGUCUGGACGGUCUUUC
AAGGACGUGGGUUCAAUUCCUGCCUCUCCACua
>Propi_acnp2_0666 Propionibacterium acnes pseudo-tmRNA, version 2 (defective, missing 5-prime end) CQ363774:34016-33664
gagcuguagugcagcguuuuccggacGGUUGUUCCAGGAGAAGUGGGGUGAGGGCCCAGGGUCAACUUGUUAACGAUCGU
UGGGAAUCUAUAAGUGCCGAGAAUACUCGCACUGACUUCGCUCUUGCUGCCUGAUCAGUGAUCGAAGGGUCAGCCCGGAU
UCUGGUUUCGUUGCGAUGACUUGCCGCCCAGUUGUUGUCGUGGUGACUGGGCGGAAUUAUUUCUACGAUCGAGUUUGUUU
GCACCAUGUCGGUGUGAGUGCAGGAGCCGAGCAAUAACGACAGCAUCGACUGCGCCCGGAAAAUGUCUGGAUGGUCUUUC
AAGGACGUGGGUUCAAUUCCUGCCUCUCCACua
>Stmyc_coeli_0475 Streptomyces coelicolor pre-tmRNA AL939114:192486-192088; NC_003888:3226936-3226538
GGGGAUGAUCGGUUUCGACAGCGGCUGUCGAAGCAGGGGAAGCGUGUCGAGGAAGCGGCCAUGAUCUCGUAAACCACAGG
CCGAAAAAAUAAUCGCCAACACCAAGCGCGAUUCCUCCCAGCAGGCCUUCGCCCUCGCUGCCUGAUCUCAGGUAGCGAAG
CGAGCCUCCUACUAAGGGAGUGUCAGCCCGGGGCUGUUCCCGACCCGGAUCCUGGCAUCAGCUAGGGGACUAAACCUUGA
UCCCGGUCACGGGGUGAAGAGGGAAACCAAACAGUGACUGGGCCCGUCGGAGACUUGUCCGCGUGAUCUCCGGGGCCGAG
AAAAUCGAAGCGGACUGCACACGGAGAAGCCCUGAUUCCGCACCGUUGGACGCGGGUUCGAUUCCCGCCAUCUCCACga
>Stmyc_livid_0728 Streptomyces lividans pre-tmRNA AJ867055:1-397
GGGGAUGAUCGGUUUCGACAGCGGCUGUCGAAGCAGGGGAAGCGUGUCGAGGAAGCGGCCAUGAUCUCGUAAACCACAGG
CCGAAAAAAUAAUCGCCAACACCAAGCGCGAUUCCUCCCAGCAGGCCUUCGCCCUCGCUGCCUGAUCUCAGGUAGCGAAG
CGAGCCUCCUACUAAGGGAGUGUCAGCCCGGGGCUGUUCCCGACCCGGAUCCUGGCAUCAGCUAGGGGACUAAACCUUGA
UCCCGGUCACGGGGUGAAGAGGGAAACCAAACAGUGACUGGGCCCGUCGGAGACUUGUCCGCGUGAUCUCCGGGGCCGAG
AAAAUCGAAGCGGACUGCACACGGAGAAGCCCUGAUUCCGCACCGUUGGACGCGGGUUCGAUUCCCGCCAUCUCCAC
>Stmyc_scabi_0611 Streptomyces scabies pseudo-tmRNA (defective, missing 3-prime end)
GGGGAUGAUCGGUUUCGACAGCGGAUGUCGAGGCAGGGGAAGCGUGUCGAGGAAGCGGCCACGAUCUCGUUAACCACAGG
CCGAAAAAAAUAAUCGCCAAUUCCAAGAGCGAUUCUCCGCAGCAGCAGUUCUCCCUCGCCGCCUGAUCUCAGGUAGCGAC
GAGACUGCUCCUGCACUAAGGAGUGUCAGCCCGGGGCUGUUCCCGACCCGGAUCCUGGCAUCAGCUAGGGGACUAAACCU
UGAUCCCGGUCACGGGGUGAAGAGGGAAAUCUAACAGUGACUGGGCCCGUCGGCGACUUGUUCGCGUGAUCGCCGGGGCC
GAGAAAAUCACAGCGAACUccccggcugacagcgcgggcgagcacggcgcgccggguggcgggaugaccgcacuccccac
gc
>Stmyc_colli_0476 Streptomyces collinus tmRNA AY485228:1-386
GGGGAUGAUCGGUUUCGACAGCGGAUGUCGAAGCAGGGGAAGCGUGUCGAGGAAGCGGCCAUGAUCUCGUAAACCACAGG
CCGAAAACAAUAAUCGCCAACACCAAGCGCGAUUCCUCCUCGUUCGCCCUCGCUGCCUAAUUAGCAGCUAGCGAACUCUC
AUAGGAGUGUCAGCCCGGGGCUGUUCCCGACCCGGAUCCUGGCAUCGACUAGGGGACUAAACCUUGAUCCCGGUCACGGG
GUGAAGAGGGAAACCAAACAGUGACUGAGCCCGUCGGAGACUUGUCCGCGUGAUCUCCGGGGCCGAGAAAAGCGAAGCGG
ACUGCACACGGAGAAGCCCUCCUUCCGCACCGUUGGACGCGGGUUCGAUUCCCGCCAUCUCCACCA
>Stmyc_aureo_0477 Streptomyces aureofaciens tmRNA AY616521:1-382
GGGGAUGAUCGGUUUCGACAGGGGAUGUUGAAACAGGGGAAGCGAGCCGAGGAACGCGGCAAUGAUCUCGUUAACCACGU
GUCGCAAAAAAAUAAUCGCCAACUCUAAGCGCGAUUCCCAGCAGUUCGCUCUCGCUGCCUAAUAAGCACCGAUAGCGCUU
GGGUGUCAGACCGGGGAGUUCCCGACCCGGACCCUGGCAUAAUCUAGGGAACUCAACCGUCCGCCCGGGCUGCGGGGGCG
GAUGGGAAAUCAAACAGCAGCUGGGCCUGUUGGCGGCUUGUCCGCGUGACCGCCAGGGCCGAGAAAAGCACAGCGGACUG
CGCUCGGAGAAGCCCUGAAUUAACUCCACUGGACCCGGGUUCGAUUCCCGCCAUCUCCACCA
>Stmyc_averm_0478 Streptomyces avermitilis pre-tmRNA BA000030:6202757-6203145; NC_003155:6202757-6203145
GGGGAUGAUCGGUUUCGACAGCGGCUGUUGAAGCAGGGGAAGCGUGUCGAGGAAGCGGCAAUGAUCUCGUAAACCAUAUG
UCGCAAAAAAUAAUCGCCAAUACCAAGAGCGAUUCCCAGUCCUUCGCCCUCGCUGCCUAAUAAGCAGUGAGUGAGGGACC
CUUAAUGGGUGUCAGCCCGGGAGUGUUCCCGACCCGGACCCUGGCAUAAUCUAGGGGACUAAACCAUCGAGCCCGGUCAC
GGGGUUCGAUGGGAAAUCAAACAGUGACUGGGCCCGUCGGCGACUUGUUCGCGUGAUCGCCGGGGCCGAGAAAAUCGCAG
CGAACUGCACACGGAGAAGCCCUGAUUCUGCACCGGUGGACGCGGGUUCGAUUCCCGCCAUCUCCACga
>Thbif_fusca_0473 Thermobifida fusca pre-tmRNA CP000088:2912337-2911966; NC_007333:2912337-2911966
GGGGGUGAUCGGUUUCGACUUCGAUGGUUGUUGUAGGGGAAGCGGGCCGAGGAGAGCGGACGCAGCCUCGUUAAAAAUGC
GACCGCGAAAAAAUAAGUGCCAACUCUAAGCGCACUGAGUUCGCUCUCGCUGCUUGAUCGAGAGUGACUCUGUCGGCCUG
GGAGCGUCUCCGACCCAGUGUCCGGCAUCGUUGAGGAGACUUGCCGGUCAGAUCAGGCCACAGGAUCUGACUGGGACAUG
CUCUGUGGCUGGGCCUGUCGGCGACUUGUCUGCGUGAGCGCCGGGGCCGAGGAGAACGCUGAGCAGACUGCGCCCGGAGA
AGCCCUGCUGCAGCAUCGAAGGACGCGGGUUCGAUUCCCGCCACCUCCACgc
>Kineo_radio_0474 Kineococcus radiotolerans pre-tmRNA AAEF02000013:26183-26548; NZ_AAEF02000013:26183-26548
GGGGAUGACAGGUUUCGACGUUGGUCGUCGAGCCAGGGGAAGCGGGUCGAGGAUGCAUGGUCAUCUCGUCAACGAUCCAU
GCAAACCAAUAGGUGCCGAUUCCAAGCGCACCGAGUUCGCCCUCGCCGCCUGAGCGAGCGCGACUCUGUCAGCCCGGGUG
AGCUCCCGCCCCGGGUCCUGGCAUCGACUAGGGGGCUCACCUCUCACCGAGGUCGCGUAGGUGAGAGGGACAAUCAACGC
GGCUGGGCCCGGCGAUGACAUGCCUGUAUGAGCAUCGGGGCCGAGCAGACCGCUGAACAGGAUGCACCCGGAGAAGCCCU
GGUACCACGCUGACGGACGCGGGUUCGAUUCCCGCCAUCUCCACuc
>Frnkia_CcI3_0612 Frankia sp. CcI3 pre-tmRNA CP000249:937591-937964; CP000249:937591-937964
GGGGGUGACCGGCUUCGACUCCGGACGUCGAGGCAGGGGAAGCGGGCCGAGGAUGAGCGGUUAUCUCGUUAACGAUCCGU
UCAGAACAACAGCUGCCAACAAGACGCAGCCCACUACCCCCACUUACGCGCUCGCCGCUUAAGAGGGACUAGGUAGUCGU
CAGCCUGGGAGAGCCUCCGGCCCAGAAUCUGACGUCGCUAGGAGGAUCACCGGCUGACCUGGUCGCGGGGUCGGUCGGGA
CAUCAAACAGCGACUGAGCCUAUGUCGGCUUGCCUGCGUGUCCGACGAGGCUGAGAAACAAGUAGCAGGAUGCGCCCGGA
GAAGCCCUGUGUCGGGGCCGGAGGACGCGGGUUCGAUUCCCGCCACCUCCACaa
>Frnkia_EAN1_0613 Frankia sp. EAN1pec pre-tmRNA AAII01000074:18538-18912; NZ_AAII01000074:18538-18912
GGGGGUGACCGGCUUCGACUCCGGACGUCGAGGCAGGGGAAGCGGGCCGAGGAUGAGCGGUUAUCUCGUUAACGAUCCGU
UCAGAACAACAGCUGCCACUAAGACGCAGCCUGCUAGCUCCACUUUCGCCCUCGCGGCCUGAGUAGAGACCAACUAGCCG
UCAGCCUGGGAGUUCCUCCGGCCCAGGAUCUGGCGUCGACAGGAGGAUCACCGUCCCACCCGGUCGCGGGGUAGGUCGGG
AAAUCUAACAGCGACUGAGCCUGCGCCGGCUUGCCUGCGGGACCGGCGGGGCUGAGAAAAAACAAGCAGGCUGCGCCCGG
AGAAGCCCUGUGUCGGGGCCGGAGGACGCGGGUUCGAUUCCCGCCACCUCCACCA
>Bifid_long1_0483 Bifidobacterium longum tmRNA, version 1 {DJO10A} AABM02000003:108296-107900; NZ_AABM02000003:108296-107900
GGGGGCGAUCGGUUUCGACGGUGACCUGUUCGCUGCAGGGAAGCGUGCCGAGAACGCCGGGUCCGCUCGUGGAUGACCCC
GGCAAAAGAAUAAGUGCUAAAUCUAACCGCACUGAGUUCGCUCUCGCUGCCUGAUUUUUAGUCAGGAUUAACCAGUGAGC
AGCCGCUCCGUUCACUCCUCCUCGUCUUUGGGAGGAUGCUGAGCGUCGUUUAGAAGACUUGCUGAUGCAGUUGAGCCUCA
GGGCUGCAUCGGGACUUUAACUGCGGAUAUGCUCGCCAUCAGUUGUCUGCGACAUCGAUGGGGGCAGAAAAAUCGCCAAC
UUGGCCAGCAGACUACGCACGUAGAAGACUGUGGGUUCGGUCAUCGGACCGGGGUUCAAUUCCCCGCGCCUCCACCA
>Bifid_long2_0484 Bifidobacterium longum tmRNA, version 2 {NCC2705} AE014295:206548-206944; AX553953:137189-137585; AX492786:137186-137582; NC_004307:206548-206944
GGGGGCGAUCGGUUUCGACGGUGACCUGUUCGCUGCAGGGAAGCGUGCCGAGAACGCCGGGUCCGCUCGUGGAUGACCCC
GGCAAAAGAAUAAGUGCUAAAUCUAACCGCACUGAGUUCGCUCUCGCUGCCUGAUUUUUAGUCAGGAUUAACCAGUGAGC
AGCCGCUCCGUUCACUCCUCCUCGUCUUUGGGAGGAUGCUGAGCGUCGUUUAGAAGACUUGCUGAUGCAGUUGAGCCUCA
GGGCUGCAUCGGGACUUUAACUGCGGAUAUGCUCGCCAUCAGUUGUCUGCGACAUCGAUGGGGGCAGAAAAAUCGCCAAC
UUGGCCAGCAGACUACGCACGUAGAAGACUGUGGGCUCGGUCAUCGGACCGGGGUUCAAUUCCCCGCGCCUCCACCA
>Rbrbr_xylan_0485 Rubrobacter xylanophilus pre-tmRNA AAEB02000021:15315-15674; NZ_AAEB02000021:15315-15674
GGGGGCGAUCCGGCUUCGACGGGAGCGGACAGCGUCCGGUGAGACGAGCCGAGUUCGCCGGAGACUCGUAAAACGCCGGC
ACCUAAACAUACACGCCAACGACAGAGAGAUGGCGCUGGCUGCCUAAAACCACUGGCAGCCCGUCGGUCCGGGCGGCCCA
CGGCCCGGUUUCCGGCGUCGGUUAGUGGGCUUACCUCCCGGGCUCCGGCCCGGGGUCCGGGGGGGACACCACAGCAGGGC
UAGCCCCUCUGCGGCGCCCCGGUCCGCAGAGGCCGGUGAAGCUAAACCGGGUGCGACGCUCGUACAAUCUCCCGGAUGGC
GCGCUCGCGGACGCGGGUUCGAUUCCCGCCGCCUCCACug
>Gemma_obscu_0132 Gemmata obscuriglobus pre-tmRNA
GGGGGCGAUCUGGUAUCGACCGGGUGUCGGAAGUGUUCGGUGGCGUGUCGUGGUUGAUCAGCUGGCCACGUAAAAAGCCG
AUCAAAAUUUAACUGCUGAACCGCAGUACUCCCUCGCGGCUUAAGUGCCGAGAGCCGUUCUGGCAGCUUCGCCUGAGAGG
UGCUAGUCCGGACGCAAGUCAGGCUCGCGGGAACUCGAGGAGAGGGGACAACCACCCGAUCCGCCUCGGCGGCCGUUCCU
GCUAAAAAAAUCUGGCCGAUAGUUGUGUCGGGGUCCCGCUCGUAGGAACCCGGUAACAACGAACGUGCGGCGGCCCGUUA
AACGGUGCGCCGCAGGAAUAUACGAGCUACACACGUAGAUGCCGGCGCGGAAGCGCCUCGGGACCGGGGUUCGAUUCCCC
GCGCCUCCACuc
>Rhopi_balti_0133 Rhodopirellula baltica pre-tmRNA BX294141:117195-117574; NC_005027:2552195-2552574
GGGGGCGACUUGGAAUCGACCGGAUGUCAAGAAGCGUAUGCCUGCGUGUCGUGGUUGAUCAGUUGGCCACGUAAAAAGCU
GAUCAAAAACUUUUAGUUGCAGAAGAAAACUUUGCACUGGCCGCCUAAUUACAGGUAGCCCGGACUGAUGGGGAUCGCCG
AUGUCGCCUGAAUGUCCGUCACAAUGUCGGAUCGUGGCCCGUCUUACUCAAGACGCGGGUCGCUAAACAAGAUUUGAGUU
AGCGGAUUCGGGAGCCUGUCAGGUAGCGCCCGAUGAAGCGAAAAGGAAUCUUCGAGAUUCCACAAAUAGCUUGACUACAC
AUGUAGACGGCAUCGUGGAUGCAUCGCGGGACGGGAGUUCAAUCCUCCCCGCCUCCACuu
>Chlam_trac1_0139 Chlamydia trachomatis pre-tmRNA, version 1 {D/UW-3/CX} AE001273:21082-20663; NC_000117:21082-20663
GGGGGUGUAAAGGUUUCGACUUAGAAAUGAAGCGUUAAUUGCAUGCGGAGGGCGUUGGCUGGCCUCCUAAAAAGCCGACA
AAACAAUAAAUGCCGAACCUAAGGCUGAAUGCGAAAUUAUCAGCUUCGCUGAUCUCGAAGAUCUAAGAGUAGCUGCUUAA
UUAGCAAAGUUGUUACCUAAAUACGGGUGACCCGGUGUUCGCGAGCUCCACCAGAGGUUUUCGAAACACCGUCAUGUAUC
UGGUUAGAACUUAGGUCCUUUAAUUCUCGAGGAAAUGAGUUUGAAAUUUAAUGAGAGUCGUUAGUCUCUAUAGGGGUUUC
UAGCUGAGGAGACAUAACGUAUAGUACCUAGGAACUAAGCAUGUAGAGGUUAGCGGGGAGUUUACUAAGGACGAGAGUUC
GACUCUCUCCACCUCCAuag
>Chlam_trac2_0140 Chlamydia trachomatis pre-tmRNA, version 2 {LGV}
GGGGGUGUAAAGGUUUCGACUUAGAAAUGAAGCGUUAAUUGCAUGCGGAGGGCGUUGGCUGGCCUCCCAAAAAGCCGACA
AAACAAUAAAUGCCGAACCUAAGGCUGAAUGCGAAAUUAUCAGCUUCGCUGAUCUCGAAGAUCUAAGAGUAGCUGCUUAA
UUAGCAAAGUUGUUACCUAAAUACGGGUGACCCGGUGUUCGCGAGCUCCACCAGAGGUUUUCGAAACACCGUCAUGUAUC
UGGUUAGAACUUGGGUCCUUUAAUUCUCGAGGAAAUGAGUUUGAAAUUUAAUGAGAGUCGUUAGUCUCUAUAGGGGUUUC
UAGCUGAGGAGACAUAACGUAUAGUACCUAGGAACUAAGCAUGUAGAGGUUAGCGGGGAGUUUACUAAGGACGAGAGUUC
GACUCUCUCCACCUCCAuag
>Chlam_trac3_0141 Chlamydia trachomatis pre-tmRNA, version 3 {Jali}
GGGGGUGUAAAGGUUUCGACUUAGAAAUGAAGCGUUAAUUGCAUGCGGAGGGCGUUGGCUGGCCUCCUAAAAAGCCGACA
AAACAAUAAAUGCCGAACCUAAGGCUGAAUGCGAAAUUAUCAGCUUCGCUGAUCUCGAAGAUCUAAGAGUAGCUGCUUAA
UUAGCAAAGUUGUUACCUAAAUACGGGUGACCCGGUGUUCGCGAGCUCCACCAGAGGUUUUCGAAACACCGCCAUGUAUC
UGGUUAGAACUUGGGUCCUUUAAUUCUCGAGGAAAUGAGUUUGAAAUUUAAUGAGAGUCGUUAGUCUCUAUAGGGGUUUC
UAGCUGAGGAGACAUAACGUAUAGUACCUAGGAACUAAGCAUGUAGAGGUUAGCGGGGAGUUUACUAAGGACGAGAGUUC
GACUCUCUCCACCUCCAuag
>Chlam_murid_0142 Chlamydia muridarum pre-tmRNA AE002296:3595-3175; NC_002620:343251-342831
GGGGGUGUAAAGGUUUCGACUUAGAAAUGAAGCGUUAAUUGCAUGCGGAGGGCGUUGGCUGGCCUCCUAAAAAGCCGACA
AAACAAUAAAUGCCGAACCUAAGGCUGAAUGCGAAAUUAUCAGCUUCGCUGAUCUUAAUGAUCUAAGAGUUGCUGCUUAA
UUAGCAAAGUUGUUACCUAAGUACUGGUAACCCGGUGUUCGCGAGCUCCACCAGAGGUUUUCGAAACGCCGUCAUUUAUC
UGGUUAGAAUUAGGGCCUUUUAACUCUCAAGGGAACUAAUUUGAAUUUUAAUGAGAGUCGUUGGUCUCUAUAGAGGUUUC
UAGCUGAGGAGAUAUAACGUAAAAUAUUCUAGAAACUAAGCAUGUAGAGGUUAGCGGGGAGUUUACUAAGGACGAGAGUU
CGAAUCUCUCCACCUCCAuag
>Chlap_pneum_0136 Chlamydophila pneumoniae pre-tmRNA AE001363:138493-138068; AR607478:138493-138068; NC_000922:138493-138068; AE002224:6757-7182; NC_002179:702708-703133; BA000008:138204-137779; NC_002491:138204-137779; AE017157:135988-135563; NC_005043:135988-135563; AR310754:148867-148442
GGGGGUGUAUAGGUUUCGACUUGAAAAUGAAGUGUUAAUUGCAUGCGGAGGGCGUUGGCUGGCCUCCUAAAAAGCCAACA
AAACAAUAAAUGCCGAACCUAAGGCUGAAUGCGAAAUUAUUAGCUUGUUUGACUCAGUAGAGGAAAGACUAGCUGCUUAA
UUAGCAAAAGUUGUUAGCUAGAUAAUCUCUAGGUAACCCGGUAUCUGCGAGCUCCACCAGAGGCUUGCAAAAUACCGUCA
UUUAUCUGGUUGGAACUUACUUUCUCUAAUUCUCAAGGAAGUUCGUUCGAGAUUUUUGAGAGUCAUUGGCUGCUAUAGAG
GCUUCUAGCUAAGGGAGUCCAAUGUAAACAAUUCUAGAAGAUAAGCAUGUAGAGGUUAGCAGGGAGUUUGUCAAGGACGA
GAGUUCGAGUCUCUCCACCUCCAuua
>Chlap_cavia_0137 Chlamydophila caviae pre-tmRNA AE015925:760011-760435; NC_003361:760011-760435
GGGGGUGUAUAGGUUUCGACUUGGAAAUGAAGUGUUAAUUGCAUGCGGAGGGCGUUGGCUGGCCUCCUAAAAAGCCGACA
AAACAAUAAAUGCCGAACCUAAGGCUGAAUGCGAAAUUAUCAGUUUCUCUGACCUCACCGAGGAAAGAUUAGCUGCUUAA
UUAGCAAAAGUUGUUGUCUAGAUAACCUCUAGAUAACCCGGUGCUCAUAGACUCCACCAGAGGUUUGUGAAACACCGUCA
UCUAUCUGGUUGGAAUCUACCUUCUCUAAUUCUCAAGGAGGUUUAUUCGAGAUUAUUGAGAGUCGUUGGCUUCCAUAGAU
GUUCUUAGCUGAGGAAGUUCAAUGUAUGAUUACUAGGGACUAAGCAUGUAGAGGUUAGCAGGGAGUUUACUAAGGACGAG
AGUUCGAGUCUCUCCACCUCCAuuu
>Chlap_abort_0138 Chlamydophila abortus pre-tmRNA CR848038:730177-730601; NC_004552:730177-730601
GGGGGUGUAUAGGUUUCGACUUAGGAAUGAAGUGUUAAUCGCAUGCGGAGGGCGUUGGCUGGCCUCCUAAAAAGCCGACA
AAACAAUAAAUGCCGAACCUAAGGCUAAAUGCGAAAUUAUCAGUUUCUCUGAACUCUCUGAGCAAAGAUUAGCUGCUUAA
UUAGCAAAAGUUGUUAUUUAGAUAACCUCUAGAUAACCCGGUCUUCAUGGACUCUACCAGAGGUUUGUGAAGUACCGUCA
UCUAUCUGGUUGGAAUCUACCUCCUCUAAUUCUCAAGGGGGUUUAUUCGAGAUUAUUGAGAAUCGUUGGUUUCCAUAGAU
GUUCUUAGCUGAGGAAAUGCAACGUUAGACUACUAGGGACUAAGCAUGUAGAAGUUAGCAGGGAGUUUACUAAGGACGAG
AGUUCGAGUCUCUCCACCUCCAuac
>Pchla_UWE25_0135 Parachlamydia UWE25 pre-tmRNA BX908798:630473-630069; NC_005861:630473-630069
GGGGGUGUUACGGUUUCGACUAGGAAGUGAAAAAUUGAUUGCAUGCGGAGGAUAUCGGUUGGCCUCCUAAAAAAACCGGU
AAAACAAUAAAUGCUAACAAUAGCAAUAAAAUUGCAAAAGUUGACUUCCAGGAAGGGACUUUUGCUAGAGCUGCGUAAGA
CCUAACAGUCUUGGUAGCCCGAUAGUCUGAAACUGGACCGAGGGUUUUAGAAUCUAUCGUCAUUUUCUUGGUAUGAAUUC
UUUUUCUCGCCGCUUCUAGGGAAAAGUUUUCAAGAUUAAAUGAAGCAAACUAACUUCGAUUGUUGCGUUCUGCAUAGGAG
UUAGGGAUUUUACAGAACGAUAAGCAUGUAGUGGUCAAUUCGUAAUUUGCCAAGGACGAGAGUUCAAUUCUCUCCACCUC
CAauu
>Verru_spino_0134 Verrucomicrobium spinosum tmRNA
GGGGGCGUUCUGGUUUCGACGGAUUGCUAGAAGUGGAGGCUGCAUGCCGCGGAUGAUUCGUUGGCCGCGUUACCAAUUCG
GAUCAAACAAACUAAAUGCGAACUCUAACGAGCUUGCCCUCGCCGCUUAAUUGACGGUGACGUUCCUCCAGUGAAGUCUG
UGAAUUGGAGGGGCGACUACUUACAGGCUGGCCAAAAGAGCGGGCGACCGGCUCCGAGGCGAGAUCUACAGGCCGCUGGG
UGGACGGUAUCCUGGCAGUAGGAGACUGGACAUCGAGAUCAAAUUAUUGCCUGAGCAUGGAGACGCUUUCAUGGAAGGUG
GUUCGGACAGGGGUUCAACUCCCCUCGCCUCCACCA
>Borre_burgd_0193 Borrelia burgdorferi pre-tmRNA AE000783:47049-46688; NC_001318:47049-46688
GGGGAUGUUUUGGAUUUGACUGAAAAUGUUAAUAUUGUAAGUUGCAGGCAGAGGGAAUCUCUUAAAACUUCUAAAAUAAA
UGCAAAAAAUAAUAACUUUACAAGCUCAAAUCUUGUAAUGGCUGCUUAAGUUAGCAGAGGGUUUUGUUGAAUUUGGCUUU
GAGGUUCACUUAUACUCUUUUCGACAUCAAAGCUUGCUUAAAAAUGUUUUCAAGUUGAUUUUUAGGGACUUUUAUACUUG
AGAGCAAUUUGGUGGUUUGCUAGUAUUUCCAAACCAUAUUGCUUAAUAAAAUACUAGAUAAGCUUGUAGAAGCUUAUAGU
AUUAUUUUUAGGACGCGGGUUCAAUUCCCGCCAUCUCCAuuu
>Borre_garin_0194 Borrelia garinii pre-tmRNA CP000013:46893-46531; NC_006156:46893-46531
GGGGAUGUUUUGGAUUUGACUGAAAAUGCUAAUAUUGUAAGUUGCAGGCAGAGGGAAUCUCUUAAAACUUCUAAAAUAAA
UGCAAAAAAUAAUAACUUUACAAGCUCAAACCUUGUAAUGGCUGCUUAAGUUAGCAGAGAGUUUCGUUGAAUUUGGCUUU
GAGGUUCACUUAUACUCUUUUCGACAUCGAAGCUUGCUUAAAAAUGUUUUCAAGUUAAUUUUUAGGGACUUUUGUACUUG
AGAGCAAUUUGGUGGUUUGCUAGUAUUUCCAAACCAUAUUGCUUAAGUAAAAUGCUAGAUAAGCUUGUAGAAGCUUAUAA
UAUUGUUUUUAGGACGCGGGUUCAAUUCCCGCCAUCUCCAuuu
>Trepo_palli_0191 Treponema pallidum pre-tmRNA AE000520:276533-276886; NC_000919:276533-276886
GGGGAUGACUAGGUUUCGACUAGGGAUGUGGGGUGUUGCGCUGCAGGUGGAGUGUCGAUCUCCUGAUUCGGCGCCUUUAU
AACUGCCAAUUCUGACAGUUUCGACUACGCGCUCGCCGCGUAAUCGCGGGCCUGUGUUUGCGCUGCUCUGAGCGAACAUA
UCGGCCCGACGCCAAACGGAGCUUGCUCUUACGUUGUGCACGGCGGACGUAGGGGGACUUUUGUCUGUGCUAAGACUCUG
GCGCGUGCGGUGCAGGCCUAGCAGAGUCCGACAAACGCAGUACGCACCGCUAAACCUGUAGGCGCGCAGCACUCGCUCUU
UAGGACGGGGGUUCGAUUCCCCCCAUCUCCACaa
>Trepo_denti_0192 Treponema denticola pre-tmRNA AE017226:246562-246212; NC_002967:246562-246212
GGGGAUGUUCCGGUUUCGACCGGAAAGACGGAGGCUUAAGCUGCAGGCGGAGUGCCGAUCUCCUGAUUCGGCAAACACUA
UAACUGCCGAAAAUAACGACAGUUUCGAUUACGCCUUAGCUGCAUAAUCGCGGAAUCUGCUUUGCACUGCUCCGAGCGGG
GCAUGAUUCCGACGCCAAUCGGGGCUUGCUUUUUAGCGGCGUGUAAACGUUAAAAGGGACUUUUUUUACACUAAGGAUUC
GACGCUUUCGGUGCUGCUACCGGAUCCCUACAACCACCUCGCACCGAUAAGCCUGUAGACGCUUCUGAUUCCCUUUUCGG
GACGGGGGUUCAAUUCCCCCCAUCUCCAuca
>Lepta_inter_0190 Leptospira interrogans pre-tmRNA AE010300:176574-176923; NC_004342:176574-176923; AE016823:175609-175958; NC_005823:175609-175958
GGGGACGAAAUUGGUUUCGACUGUUGUUGCCAGGGGUUAUGUGGCGUGUAGAGGUUGUAGGCUCCUCUAAAAACCUUCAA
ACAAUAACCGCUAAUAACGAAUUAGCUUUAGCAGCUUAAUCUCUGCUACGGAACUUUAGUUUUUUCUCUCGAAUUCUAAA
UGUUCUGACAAUGAUCGGGAGGCGAUUCUUUUGGUUUUUGGUUCCUAAAAGAGUUUGUAUUUGAGCCGAAUAGGAAAGAG
AGUCCUGUCUGAGGGUGAACCUCUUUCCGAAAUUUUAUACACAGACUACACACGUAGAGGCUGAUCUGGGGCGCAAUAGG
ACGCGGGUUCGAACCCCGCCGUCUCCAaag
>Fibro_succi_0188 Fibrobacter succinogenes pre-tmRNA
GGGGGUGCUCUGGUUUCGACAGGGUUACCGAAGUGUUAGUUGCAAGUCGAGGUCUCAGACGAGGGCAACUCGUUAAAAAG
UCUGAAAAAAAAUAAGUGCUGACGAAAACUACGCACUCGCUGCCUAAUUAACGGCAACGCCGGGCCUCAUUCCGCUCCCA
UCGGGAUGUACGUCCGGACGCAAUAUGGGAUAGGGAAGUGUCAUGCCUGGGGGCAUCUCCCGAGAUUUACUAGGCUGGUC
AAACUCCGCGCCGACCUUCUUGGGCGUGGAUAAGACGAGAUCUUAAAUACGAAGGGAACACUUGUAGGAACGUACAUGGA
CGUGAUUUUGGACAGGGGUUCGACUCCCCUCACCUCCAgaa
>Acibm_capsu_0189 Acidobacterium capsulatum tmRNA
GGGGGCGUCACGGUUUCGACGGGAUUGACUGCGGCAAAGAGGCAUGCCGGGGGGUGGGCACCCGUAAUCGCUCGCAAAAC
AAUACUUGCCAACAACAAUCUGGCACUCGCAGCUUAAUUAAAUAAGUUGCCGUCCUCUGAGGCUUCGCCUGUGGGCCGAG
GCAGGACGUCAUACAGCAGGCUGGUUCCUUCGGCUGGGUCUGGGCCGCGGGGAUGAGAUCCACGGACUAGCAUUCUGCGU
AUCUUGUCGCUUCUAAGCGCAGAGUGCGAAACCUAAAGGAAUGCGACUGAGCAUGGAGUCUCUUUUCUGACACCAAUUUC
GGACGCGGGUUCGACUCCCGCCGCCUCCACCA
>Solib_usita_0619 Solibacter usitatus tmRNA AAIA01000012:14965-15316; NZ_AAIA01000012:14965-15316
GGGGGCGUAACGGAUUCGACGGGAUUGAAUCGUGGUGGGGAGGCGUGCCGGGUUCCGAGCUCCCGUAAAACGAUCGGAAA
ACAUAACUGCCAACACGCAGUUUGCAUACGCUGCUUAAUUAAUUAAGUAGCCGUUCCAGCCACUGAGCCUGCGCGGUGGU
GAGUGAACGUCAUUUUGCAGGAUAGGCCAAGAGCUUCGGUCCGGAGCUGGCGGCUGAGACUCAAUCGGGCUAAGCUGCCA
CCGCCCUUGCCGGUUCAGGGGUGGCCGCCGACAACCAUGAGCCGGAUACGCACGUAGUUCUCUCCAGUACGGGCUUUUUC
GGACGGGGGUUCAACUCCCCCCGCCUCCACCA
>Uncul_farm2_0694 Uncultured farm2 tmRNA AAFX01031538:449-804
GGGGGCGCACCGGUUUCGACGGGAUUGAAUCGUUGUGGGAAGGCGUGCCGGGUUCCGAGCUCCCGUAAAACGAUCGGAAA
ACAACAACUGCCAACAACACGCAGUUUGCAUACGCUGCCUAAUUAAUUAGGUAGCCGCUGCGGUCUCUGGCUCCUGUCUG
GAGGCCUGUCGGCGUCUUAAUGCAGGAUGGGCCUAACGCUUCGGUCCGGAGCGGACAGCCGAGAUCAAUCGGGCUAAGCC
GACCGGCUCUUGCCGGUUCCUCACCGGUCGGACGAAAACCACCGAAUCGGACACGCACGUAGUCUUUUCAUGGCGGACUU
UCUCGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA
>Fusob_nucl1_0452 Fusobacterium nucleatum tmRNA, version 1 {ATCC 25586} AE009951:1209564-1209221; NC_003454:1209564-1209221
GGGGAUGCAAAGGUUUCGACGGGGUUGUGAGGUUAUAGGUAGCAAGUCAGGCUUGUCGCUGUGAGAGACUAAACACAUCU
UUUAGAUGGAAACAAAGAUUACGCUUUAGCUGCUUAGUUCAGCUACACCUUGGAUAACUUAUUCUAUACGGGUUUUUCAA
AGGUGUUGACUAGUAUAGAUCACCAUAAAUGAUUUCUCUAAGUUUAUGGGACAUUUUAGAGGAUAGUUUUAGUUAGCCCU
GUUUACGGGAGUAAUUAUUACGAAAUUUAAUAGUAAACUAAACUUGUAGAAGCUUAUGGUCAUUAUGAUUUCGGACACGA
GUUCGACUCUCGUCAUCUCCACCA
>Fusob_nucl2_0453 Fusobacterium nucleatum tmRNA, version 2 {ATCC 10953}
GGGGAUGCAAAGGUUUCGACGGGGUUGUGAGGUUAUAGGUAGCAAGUCAGGUUUGUCGCUGUGAAAGACUAAACACAUCG
UUUAGAUGGAAACAAAGAAUACGCUUUAGCUGCUUAGUUCAGCUACACCUUGGAUAACUUAUUCUAUACGGGUUUUUCAA
AGGUGUUGACUAGUAUAGAUUACCAUAAAUGAUUUCUCUAAGUUUAUGGGACAUUUUAGAGGAUAGUUUUAGUUAGCCCU
GUUUACGGGAGUAAUUAUUACGAAAUUUAAUAGUAAACUAAACUUGUAGAAGCUUAUGGUCGUUAUGAUUUCGGACACGA
GUUCGACUCUCGUCAUCUCCACCA
>Fusob_nucl3_0454 Fusobacterium nucleatum tmRNA, version 3 {ATCC 49256} AABF01000114:534-877; NZ_AABF02000114:534-877
GGGGACGCAAAGGUUUCGACGGGGUUGUGAGGUUAUAGGUAGCAAGUCAGGUUUGUCGCUGUGAAAGACUAAACACAUCG
UUUAGAUGGAAACAAAGAAUACGCUUUAGCUGCUUAGUUCAGCUACACCUUGGAUAACUUAUUCUAUACGAGUUUUUCAA
AGGUGUUGACUAGUAUAGAUUACCGUAAAUGAUUUCUCUAAGUUUAUGGGACAUUUUAGAGAAUAGUUUUAGUUAGCCCU
GUUUACGGGAGUAAUUAUUACGAAAUCUAAUAGUAAACUAAACUUGUAGAAGCUUAUAGUCAUUAUGAUUUCGGACACGA
GUUCGAUUCUCGUCGUCUCCACCA
>Dicgl_therm_0111 Dictyoglomus thermophilum tmRNA
GGGGGCGAUUGGUUUCGACAGGGAGUACAAGGAUCAAAAGCUGCAAGCCGAGGUGCCGUUACCUCGUAAAACAACGGCAA
AAAAGAAGUGCCAACACAAAUUUAGCAUUAGCUGCUUAAUUUAGCAGCUACGCUCUUCUAACCCGGGCUGGCAGGGUUAG
AAGGGUGUCAUAAUGAGCCAGCUGCCCCUUCCGACUCCCCUAAGGAAGGGAAAGAUGUAGGGGAUAGGUGCUUACAGAAU
CCUGCGGGAGGGAGUCUGUAAGUGCCGAAAAGUUAAAACUCCCGCUAAGCUUGUAGAGGCUUUUGAUUCUUGCUCUCUGG
ACGCGGGUUCGACUCCCGCCGCCUCCACCA