Shew_SAR1_2_0624 - Shewanella SAR-1 tmRNA, version 2

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Shewanella SAR-1 tmRNA, version 2:


    .   10    .   20    .   30    .   40    .   50
GGGGGCGAAUAGGGUUCGACGUUUCUACUGGACUCCGAAGCGCAUGCCAA
GAUUGUAGUAAUUCUUGUAAAACAUACUACAAAAAAAAUAGUUGCAAAUA
ACGACAACUACGCUUUAGCAGCUUAAUGCUAACCGAUGCAAGAAUUGACU
GUGGUUUGAAGCAUCGGCUAAACACACAGUCUAGCCAAGCUAUAUUGCUU
GGAUAUAGUUUGGUAAAAACUUAAUCAAGCUAGCUUUUAUGCCCUGCUCU
UCGGGUGAUAAAAGUUAAAAAUAAUAGAAUGAGCUAUGCAUGUAGAAGUU
AGGCUGAAGGAUUGACGGACGCGGGUUCAAUUCCCGCCGCCUCCACCA

Proteolysis Tag: (A)ANNDNYALAA*
Reading Frame (underlined): nt 94-126

Taxonomy: {Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae}

Sequencing:
environmental sequence {NOTE: included by sequencers in cf. Shewanella SAR-1, but that organism bin already has a more Shewanella-like tmRNA sequence, while this sequence has 97 % identity with Uncult_EBAC_0310}, nt 454-107 of AACY01087071.1 [Ref 1]

Identification: [Ref 2] in AACY01087071

Reference:
1. Venter et al (2004) Science 304:66-74
2. K Williams (10-Feb-2005)

Posted: 10-Feb-2005

tmRNA Website ID: Shew_SAR1_2_0624

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