Shew_SAR2_2_0628 - Shewanella SAR-2 pre-tmRNA

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Shewanella SAR-2 pre-tmRNA:


    .   10    .   20    .   30    .   40    .   50
GGGGGCGACCGGUUUCGACGGGGUAAGAUAAUGAUAAGAUUGCAUGCAGA
GGUUCGGGAUCCUCUUUAAUAUCCCCGAAAUAUCAAUAAAUGCCGAUUAC
GGCUACAUGGCAGCUGCUUAAUUAGCUCUGCCCGCUCUGGAUUAAGUUUG
UCUGUGGUUUAAUCUAAGAGCGUCAUAAACGCAGACUGGUCCCUGGAUUU
GUUUACUAGAAAGGGAUAAGAUGUUUUGUAAACUGGUUGAUAUAUGGGUU
GUUAUUUGUCCGCUAUAUCAAUGAGAAUAAAUCAGAUGACUAUGUAUGUA
GACGUUUUGUUAGAAUCUAUCUCGGACGGGAGUUCGAAUCUCCCCGCCUC
CACau

Mature tmRNA has 3-prime CCA tail;

Proteolysis Tag: (A)ADYGYMAAA*
Reading Frame (underlined): nt 92-121

Taxonomy: {Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales}

Sequencing:
environmental sequence {cf. Shewanella SAR-2}, nt 5888-6242 of AACY01086943.1 {an unrelated tmRNA sequence Shew_SAR2_2 was included in the same organism bin} [Ref 1]

Identification: [Ref 2] in AACY01086943

Reference:
1. Venter et al (2004) Science 304:66-74
2. K Williams (10-Feb-2005)

Posted: 10-Feb-2005

tmRNA Website ID: Shew_SAR2_2_0628

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