Silic_TM104_0210 - Silicibacter TM1040 pre-tmRNA (precursor permuted)

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Silicibacter TM1040 pre-tmRNA (precursor permuted):


    .   10    .   20    .   30    .   40    .   50
GUUCCUUCGGGAACUAUGGACAUAAACGCGCUCGUAAUAAGCGGAUCGGA
CCCGGGGGCGGUACCCGGCGGCUCCACCAaaucacuuccggcuuucuccu
ucguuuggggaguuuauucggaaccggGGGGCCGAAAUAGGAUCGACGGA
CGUCUAAAGGGGUUAGCUUUGUCUCGGCUGUCUGCCACCGUUACCGGCGA
AAACAGUACAAUUGCAAACGACAAUCGUGCUCCGGUUGCUCUGGCUGCGU
AAGCAGUUCGAGUCGAACCGACUUUAAGUCCUAGCGCCUAGCCGCGUUAG
GCGGGGUUCGCAGGUACCUGGCAACAGAAACCUGCACUC

Two-Piece Mature tmRNA: Acceptor piece, nt 1-76; Coding piece, nt 128-339;
Internal Spacer, nt 77-127

Proteolysis Tag: (A)ANDNRAPVALAA*
Reading Frame (underlined): nt 214-252

Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae

Sequencing:
Silicibacter sp. TM1040, nt 283576-283238 of AAFG02000001.1 (and nt 283576-283238 of NZ_AAFG02000001.1) [Ref 1]

Identification: [Ref 2] in sequence data at DOE Joint Genome Institute

Reference:
1. Copeland et al (2004) Unpublished
2. K Williams (22-Dec-2004)

Posted: 27-Dec-2004

tmRNA Website ID: Silic_TM104_0210

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